BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3168.p (260 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_587459.1| transcriptional regulator two components regula... 240 2e-61 emb|CBJ40724.1| putative two-component response regulator transc... 224 1e-56 ref|NP_522603.1| two-component response regulator transcription ... 223 3e-56 emb|CCA88223.1| putative two-component response regulator transc... 222 4e-56 emb|CCA83520.1| putative two-component response regulator transc... 222 4e-56 >ref|YP_587459.1| transcriptional regulator two components regulatory system [Cupriavidus metallidurans CH34] gb|ABF12190.1| transcriptional regulator two components regulatory system [Cupriavidus metallidurans CH34] Length = 225 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 131/224 (58%), Positives = 160/224 (71%) Query: 36 MQLLLVEDDMKAARLLAQGLQEEAFAVTVAHSAEEALALLDRPFDVAIFDRMLPGIDGLA 95 M++LLV+DD KAARLLA+GLQEE + V AHS + A A F + I D MLPG G+ Sbjct: 1 MRILLVDDDQKAARLLARGLQEEGYDVETAHSVDVAAAHNCYAFSLLILDWMLPGKSGVE 60 Query: 96 LCRRVRQSQVLWPILMLTARDALGEKVEGLHAGVDDYLAKPFAFEELLARLHALLRRPRQ 155 CR +R+ V PILMLTARDA+ +++ GL G DDYL KPF FEELLA + ALLRR Sbjct: 61 FCRELREQGVRTPILMLTARDAINDRITGLDTGADDYLTKPFVFEELLAHVRALLRRVEL 120 Query: 156 LQVLHLQLADLRIDLLAHEVMRDGQRLDLTQKEYAVLVLLVRHSGQVVSRQQLAEEVWHA 215 Q + L DL ID V R G RLDLT KEYA+L+LLV H+G++VSR QLAE +WHA Sbjct: 121 AQPAPITLNDLVIDPQTRGVTRAGARLDLTPKEYAILILLVTHAGEIVSRAQLAEHIWHA 180 Query: 216 DLIAIDNLMDVHIKNLRRKIEADGRPALIETLRGQGFRMRGDGA 259 DLIAIDNL+DVH+KNLRRK++ G ALI+T+RGQGFR+ GA Sbjct: 181 DLIAIDNLIDVHMKNLRRKLDPPGMAALIQTVRGQGFRISPSGA 224 >emb|CBJ40724.1| putative two-component response regulator transcription regulator protein [Ralstonia solanacearum CMR15] Length = 227 Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 134/219 (61%), Positives = 162/219 (73%) Query: 36 MQLLLVEDDMKAARLLAQGLQEEAFAVTVAHSAEEALALLDRPFDVAIFDRMLPGIDGLA 95 M +LL+EDD KAARLLA+GLQEE F V VAHSAEEA A L + I D MLPG DG+A Sbjct: 1 MHILLIEDDQKAARLLARGLQEEGFEVAVAHSAEEADASLLATCQLIILDWMLPGKDGIA 60 Query: 96 LCRRVRQSQVLWPILMLTARDALGEKVEGLHAGVDDYLAKPFAFEELLARLHALLRRPRQ 155 LCR +R+ + P+LMLTARDA +++ GL G DDYL KPF F+ELLAR+ ALLRR R Sbjct: 61 LCRELRERDLQTPVLMLTARDATADRIAGLDTGADDYLTKPFVFDELLARVRALLRRARL 120 Query: 156 LQVLHLQLADLRIDLLAHEVMRDGQRLDLTQKEYAVLVLLVRHSGQVVSRQQLAEEVWHA 215 + DL +D A V R GQ LD+T KEYA+L L+RH+GQ+VSR QLAE VW A Sbjct: 121 APAAPRVIGDLVLDPNARAVTRGGQALDVTPKEYAILEYLMRHAGQIVSRLQLAEHVWRA 180 Query: 216 DLIAIDNLMDVHIKNLRRKIEADGRPALIETLRGQGFRM 254 DLIAIDNL+DVH+KNLRRK++ G+PALI T+RGQGFR+ Sbjct: 181 DLIAIDNLIDVHMKNLRRKVDPPGQPALIHTVRGQGFRL 219 >ref|NP_522603.1| two-component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] emb|CAD18193.1| probable two-component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 227 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 134/219 (61%), Positives = 162/219 (73%) Query: 36 MQLLLVEDDMKAARLLAQGLQEEAFAVTVAHSAEEALALLDRPFDVAIFDRMLPGIDGLA 95 M +LL+EDD KAARLLA+GLQEE F V VAHSAEEA A L + I D MLPG DG+A Sbjct: 1 MHILLIEDDQKAARLLARGLQEEGFEVAVAHSAEEADASLLVACQLIILDWMLPGKDGIA 60 Query: 96 LCRRVRQSQVLWPILMLTARDALGEKVEGLHAGVDDYLAKPFAFEELLARLHALLRRPRQ 155 LCR +R+ + P+LMLTARDA +++ GL G DDYL KPF F+ELLAR+ ALLRR R Sbjct: 61 LCRELRERDLQTPVLMLTARDATADRIAGLDTGADDYLTKPFVFDELLARVRALLRRARL 120 Query: 156 LQVLHLQLADLRIDLLAHEVMRDGQRLDLTQKEYAVLVLLVRHSGQVVSRQQLAEEVWHA 215 + DL +D A V R GQ LD+T KEYA+L L+RH+GQ+VSR QLAE VW A Sbjct: 121 APAAPRVIGDLVLDPNARAVTRGGQALDVTPKEYAILEYLMRHAGQIVSRLQLAEHVWRA 180 Query: 216 DLIAIDNLMDVHIKNLRRKIEADGRPALIETLRGQGFRM 254 DLIAIDNL+DVH+KNLRRK++ G+PALI T+RGQGFR+ Sbjct: 181 DLIAIDNLIDVHMKNLRRKVDPPGQPALIHTVRGQGFRL 219 >emb|CCA88223.1| putative two-component response regulator transcription regulator protein [Ralstonia syzygii R24] Length = 227 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 132/219 (60%), Positives = 160/219 (73%) Query: 36 MQLLLVEDDMKAARLLAQGLQEEAFAVTVAHSAEEALALLDRPFDVAIFDRMLPGIDGLA 95 M +LL+EDD KAARLLA+GLQEE F V VAHSAEEA A L + I D MLPG DG+A Sbjct: 1 MHILLIEDDQKAARLLARGLQEEGFEVAVAHSAEEAHASLLATSHLVILDWMLPGKDGIA 60 Query: 96 LCRRVRQSQVLWPILMLTARDALGEKVEGLHAGVDDYLAKPFAFEELLARLHALLRRPRQ 155 +CR +R+ PILMLTARDA +++ GL+ G DDYL KPF F+ELLAR+ ALLRR R Sbjct: 61 VCRELRERDPQLPILMLTARDATADRIAGLNTGADDYLTKPFVFDELLARVRALLRRARL 120 Query: 156 LQVLHLQLADLRIDLLAHEVMRDGQRLDLTQKEYAVLVLLVRHSGQVVSRQQLAEEVWHA 215 + DLR+D A V R G LD+T KEYA+L L+RH+G+ VSR QLAE+VW A Sbjct: 121 APAAQRVIGDLRLDPNARVVTRGGHALDITPKEYAILECLMRHAGETVSRLQLAEQVWRA 180 Query: 216 DLIAIDNLMDVHIKNLRRKIEADGRPALIETLRGQGFRM 254 DLIAIDNL+DVH+KNLRRK++ G P LI T+RGQGFR+ Sbjct: 181 DLIAIDNLIDVHMKNLRRKVDPPGMPVLIHTVRGQGFRL 219 >emb|CCA83520.1| putative two-component response regulator transcription regulator protein [blood disease bacterium R229] Length = 227 Score = 222 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 132/219 (60%), Positives = 160/219 (73%) Query: 36 MQLLLVEDDMKAARLLAQGLQEEAFAVTVAHSAEEALALLDRPFDVAIFDRMLPGIDGLA 95 M +LL+EDD KAARLLA+GLQEE F V VAHSAEEA A L + I D MLPG DG+A Sbjct: 1 MHILLIEDDQKAARLLARGLQEEGFEVAVAHSAEEAHASLLATPHLVILDWMLPGKDGIA 60 Query: 96 LCRRVRQSQVLWPILMLTARDALGEKVEGLHAGVDDYLAKPFAFEELLARLHALLRRPRQ 155 +CR +R+ PILMLTARDA +++ GL+ G DDYL KPF F+ELLAR+ ALLRR R Sbjct: 61 VCRELRERDPQLPILMLTARDATADRIAGLNTGADDYLTKPFVFDELLARVRALLRRARL 120 Query: 156 LQVLHLQLADLRIDLLAHEVMRDGQRLDLTQKEYAVLVLLVRHSGQVVSRQQLAEEVWHA 215 + DLR+D A V R G LD+T KEYA+L L+RH+G+ VSR QLAE+VW A Sbjct: 121 APAAQRVIGDLRLDPNARVVTRGGHALDITPKEYAILECLMRHAGETVSRLQLAEQVWRA 180 Query: 216 DLIAIDNLMDVHIKNLRRKIEADGRPALIETLRGQGFRM 254 DLIAIDNL+DVH+KNLRRK++ G P LI T+RGQGFR+ Sbjct: 181 DLIAIDNLIDVHMKNLRRKVDPPGMPVLIHTVRGQGFRL 219