BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3164.p (423 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_587456.1| heavy metal cation tricomponent efflux outer me... 384 e-104 emb|CBJ40721.1| putative efflux pump outer membrane [Ralstonia s... 355 7e-96 ref|NP_522600.1| putative outer membrane channel lipoprotein tra... 355 1e-95 ref|YP_260717.1| NodT family efflux transporter outer membrane f... 342 7e-92 ref|YP_003750026.1| rnd efflux system, outer membrane lipoprotei... 340 2e-91 >ref|YP_587456.1| heavy metal cation tricomponent efflux outer membrane porin ZneC [Cupriavidus metallidurans CH34] gb|ABF12187.1| heavy metal cation tricomponent efflux outer membrane porin ZneC (CzcC-like) [Cupriavidus metallidurans CH34] Length = 511 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 241/416 (57%), Positives = 302/416 (72%) Query: 3 PAQWWKVFGSPALDSLVDDALAHNADLEAAQAALRAARETAASQSGSLLPSVDLHFMPTR 62 PAQWW +FGS L++LVD AL N DL+A +AALR A+E A+Q G+ PSVD + P+R Sbjct: 66 PAQWWTMFGSSELNALVDAALRANPDLQAMEAALRVAQENVAAQRGAFFPSVDASYTPSR 125 Query: 63 QKVADTLASPLADNSYIYNLHTAQLNIAYAPDIFGGTRRQIEAGRAQAEVQRFQRNATYL 122 QK+A +ASPL+DNS ++ LHTAQL+++Y PD+FGGTRRQ+E+G AQA+V RFQ A YL Sbjct: 126 QKIAQIIASPLSDNSDLFTLHTAQLSVSYVPDVFGGTRRQVESGVAQADVARFQWQAAYL 185 Query: 123 TLVSNVVLAVVNEAALREQLQAAEQAAALAARQLDLVRQQRALGALGLADVAAQESLLAQ 182 TL SNVV A + EA+LR Q++A + AL+ RQL+ VR+Q+ LG +G A+VAAQE+ LAQ Sbjct: 186 TLTSNVVNAAIQEASLRAQIRATQDVIALSTRQLEAVRKQQRLGQVGAAEVAAQEATLAQ 245 Query: 183 AQAVLPPLRKQLAQQRDQIAVLVGRFPGQGGTPTLALSALKLPSELPLSLPSTLVQQRPD 242 A+A LPPL +QLAQQR+ +A L GR P AL LP LPLSLPS LV QRPD Sbjct: 246 AEAALPPLDRQLAQQRNLLAALTGRLPSDAVPQQFEFEALTLPGTLPLSLPSRLVGQRPD 305 Query: 243 VRAAQAQRQAASAQVGVAIANRLPSFNITGTIGSSAQEFSKLFTSGPGFWTLGLDLATPL 302 +RAA+AQ AASAQ+GVA A RLP+ +T +GSS+Q LFT+G GFW + L P+ Sbjct: 306 IRAAEAQMHAASAQIGVATAARLPNITLTAALGSSSQAIGDLFTAGTGFWGISAGLMQPI 365 Query: 303 FHGGSLQHQQRAAEAGLDQAGAQYRSVVLGAFQNVADSLHAIAADADGLAAATRAESAAQ 362 F GG L HQQRAAEA QA AQYRS VL A+Q VAD+LHAI ADA GL A+ AE AA Sbjct: 366 FKGGMLLHQQRAAEAAYKQASAQYRSTVLTAYQGVADALHAIEADARGLRTASDAERAAY 425 Query: 363 RSFDAAQAQWKAGIAGYPQVLLAQQNLLTASQSRLQAQAARLADTVALFQALGGGW 418 RSF+ AQAQWKAG GYP V+LA+Q ++ + +QA+A+R +DTV L QALGG W Sbjct: 426 RSFNIAQAQWKAGQIGYPAVMLAEQTYRQSAITLVQARASRYSDTVGLMQALGGSW 481 >emb|CBJ40721.1| putative efflux pump outer membrane [Ralstonia solanacearum CMR15] Length = 492 Score = 355 bits (912), Expect = 7e-96, Method: Composition-based stats. Identities = 248/418 (59%), Positives = 295/418 (70%) Query: 4 AQWWKVFGSPALDSLVDDALAHNADLEAAQAALRAARETAASQSGSLLPSVDLHFMPTRQ 63 QWW +FGS L+ LVD AL N DL++A+AALR A+E A+ GS PSVD TRQ Sbjct: 67 GQWWTMFGSGPLNELVDAALKANPDLQSAEAALRVAQENLAAARGSFYPSVDAQMTSTRQ 126 Query: 64 KVADTLASPLADNSYIYNLHTAQLNIAYAPDIFGGTRRQIEAGRAQAEVQRFQRNATYLT 123 K A LASPLA +Y+LHTAQL ++YAPD+FGG RRQ+E AQAEV FQR A YLT Sbjct: 127 KTAAVLASPLASGDLLYSLHTAQLTVSYAPDVFGGVRRQVEVSAAQAEVAAFQREAAYLT 186 Query: 124 LVSNVVLAVVNEAALREQLQAAEQAAALAARQLDLVRQQRALGALGLADVAAQESLLAQA 183 L +NVV A + EA+LR Q+QA +A A+A+R L VR+QR G LG ADVAAQES LAQ Sbjct: 187 LTANVVAAAIQEASLRAQVQATHEAVAVASRLLATVRKQRQAGQLGAADVAAQESALAQI 246 Query: 184 QAVLPPLRKQLAQQRDQIAVLVGRFPGQGGTPTLALSALKLPSELPLSLPSTLVQQRPDV 243 +A LPPL KQLA QRD I VL GRFP + T L +L+LP LPLSLPS LV+QRPD+ Sbjct: 247 EATLPPLEKQLALQRDLITVLAGRFPSETIAQTFELESLQLPQALPLSLPSRLVEQRPDI 306 Query: 244 RAAQAQRQAASAQVGVAIANRLPSFNITGTIGSSAQEFSKLFTSGPGFWTLGLDLATPLF 303 RAA+AQ AASAQ+GVA A RLPS ++ +GSSA FSKLFT G GFW L + P+F Sbjct: 307 RAAEAQLHAASAQIGVATAARLPSITLSADLGSSALAFSKLFTGGTGFWGLTGGITQPIF 366 Query: 304 HGGSLQHQQRAAEAGLDQAGAQYRSVVLGAFQNVADSLHAIAADADGLAAATRAESAAQR 363 GG+L HQQRAAEA DQA AQYRS VL AFQ+VAD+LHAI ADA L AA+ A AA++ Sbjct: 367 RGGTLLHQQRAAEAAYDQAAAQYRSTVLTAFQSVADTLHAIDADARALQAASHAADAARK 426 Query: 364 SFDAAQAQWKAGIAGYPQVLLAQQNLLTASQSRLQAQAARLADTVALFQALGGGWWHQ 421 S AQ QW G+ YP VL A+Q + S QA+A RLAD+VAL QALGGGWW++ Sbjct: 427 SLTIAQRQWTLGLIAYPAVLQAEQAYQQSLVSLAQARAGRLADSVALLQALGGGWWNR 484 >ref|NP_522600.1| putative outer membrane channel lipoprotein transmembrane [Ralstonia solanacearum GMI1000] emb|CAD18190.1| putative outer membrane channel lipoprotein transmembrane [Ralstonia solanacearum GMI1000] Length = 485 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 249/418 (59%), Positives = 300/418 (71%) Query: 4 AQWWKVFGSPALDSLVDDALAHNADLEAAQAALRAARETAASQSGSLLPSVDLHFMPTRQ 63 QWW +FGS AL++LV+ AL N DL++A+AALR A+E A+ GS PSVD TRQ Sbjct: 60 GQWWTMFGSGALNALVEAALKANPDLQSAEAALRVAQENLAAARGSFFPSVDAQMASTRQ 119 Query: 64 KVADTLASPLADNSYIYNLHTAQLNIAYAPDIFGGTRRQIEAGRAQAEVQRFQRNATYLT 123 K A LASPLA + +Y+LHTAQL ++YAPD+FGG RR++EA AQAEV FQR A YLT Sbjct: 120 KTAAVLASPLASGNLLYSLHTAQLTVSYAPDVFGGVRREVEASAAQAEVAAFQREAAYLT 179 Query: 124 LVSNVVLAVVNEAALREQLQAAEQAAALAARQLDLVRQQRALGALGLADVAAQESLLAQA 183 L +NVV A + EA+LR Q+QA +A A+A+R L VR+QR LG LG ADVAAQES LAQ Sbjct: 180 LTANVVAAAIQEASLRAQVQATHEAVAVASRLLAAVRKQRQLGQLGAADVAAQESALAQI 239 Query: 184 QAVLPPLRKQLAQQRDQIAVLVGRFPGQGGTPTLALSALKLPSELPLSLPSTLVQQRPDV 243 +A LPPL KQLA QRD I VL GRFP + T T L +L+LP LPLSLPS LV+QRPD+ Sbjct: 240 EATLPPLEKQLALQRDLITVLAGRFPSETITQTFELESLQLPQALPLSLPSRLVEQRPDI 299 Query: 244 RAAQAQRQAASAQVGVAIANRLPSFNITGTIGSSAQEFSKLFTSGPGFWTLGLDLATPLF 303 RAA+AQ AASA +GVA A RLPS ++ +GSSA FSKLFT G GFW L +A P+F Sbjct: 300 RAAEAQLHAASAHIGVATAARLPSITLSADLGSSALAFSKLFTGGTGFWGLTGGIAQPIF 359 Query: 304 HGGSLQHQQRAAEAGLDQAGAQYRSVVLGAFQNVADSLHAIAADADGLAAATRAESAAQR 363 GG+L HQQRAAEA DQA AQ RS VL AFQ+VAD+LHAI ADA L AA+ A AA++ Sbjct: 360 RGGTLLHQQRAAEAAYDQAAAQCRSTVLTAFQSVADTLHAIDADARALQAASHAADAARK 419 Query: 364 SFDAAQAQWKAGIAGYPQVLLAQQNLLTASQSRLQAQAARLADTVALFQALGGGWWHQ 421 S AQ QW G+ YP VL A+Q + S QA+A RLAD+VAL QALGGGWW++ Sbjct: 420 SLTIAQRQWTLGLIAYPAVLQAEQAYQQSLVSLAQARAGRLADSVALLQALGGGWWNR 477 >ref|YP_260717.1| NodT family efflux transporter outer membrane factor lipoprotein [Pseudomonas fluorescens Pf-5] gb|AAY92881.1| efflux transporter, outer membrane factor lipoprotein, NodT family [Pseudomonas fluorescens Pf-5] Length = 594 Score = 342 bits (877), Expect = 7e-92, Method: Composition-based stats. Identities = 216/427 (50%), Positives = 297/427 (69%), Gaps = 8/427 (1%) Query: 3 PAQWWKVFGSPALDSLVDDALAHNADLEAAQAALRAARETAASQSGSLLPSVDLHFMPTR 62 P QWW +F SP LD+LV +AL N D++AAQAALR A E ++ SL PS+ TR Sbjct: 110 PGQWWTLFRSPQLDALVQEALQANPDIDAAQAALRQANELVYAEQASLFPSLSASASKTR 169 Query: 63 QKVADTLASPLADNSY--------IYNLHTAQLNIAYAPDIFGGTRRQIEAGRAQAEVQR 114 +KV+ A + + I+ +++A L+++YAPD+FGGTRRQIEA AQA+ QR Sbjct: 170 EKVSAASALGSSGGAAAAGGSAAQIFTVNSASLSVSYAPDVFGGTRRQIEASGAQADYQR 229 Query: 115 FQRNATYLTLVSNVVLAVVNEAALREQLQAAEQAAALAARQLDLVRQQRALGALGLADVA 174 +Q ATYLTL +N+V ++ A++R+Q+ A E L + QLDL++ QR LGA+G +D+ Sbjct: 230 YQLEATYLTLTANLVNTAISLASIRDQIAATETVIRLQSDQLDLLQAQRRLGAIGDSDLL 289 Query: 175 AQESLLAQAQAVLPPLRKQLAQQRDQIAVLVGRFPGQGGTPTLALSALKLPSELPLSLPS 234 Q++ LAQ +A LPPL+KQLAQ R+Q+ +GRFP Q L++L LP ELPLSLPS Sbjct: 290 TQQATLAQTRATLPPLQKQLAQTRNQLQAYLGRFPSQDRGEHFQLASLHLPEELPLSLPS 349 Query: 235 TLVQQRPDVRAAQAQRQAASAQVGVAIANRLPSFNITGTIGSSAQEFSKLFTSGPGFWTL 294 +V+QRPDVR+A+AQ ASA +GVAIAN+LP F+ITG++GS+A +KLF+SG G W+L Sbjct: 350 AIVEQRPDVRSAEAQLHQASADIGVAIANQLPQFSITGSLGSTALAGTKLFSSGTGVWSL 409 Query: 295 GLDLATPLFHGGSLQHQQRAAEAGLDQAGAQYRSVVLGAFQNVADSLHAIAADADGLAAA 354 +A PLF G+L+H++RAA A +QA A+YR V+ AFQ+VA++L A+ ADA+ L Sbjct: 410 AGSIAQPLFDAGALEHRKRAAVAAYEQAAARYRGTVITAFQDVANALRALQADAEALQQQ 469 Query: 355 TRAESAAQRSFDAAQAQWKAGIAGYPQVLLAQQNLLTASQSRLQAQAARLADTVALFQAL 414 AE+AA++S D AQAQ++ G GY +L AQQ A SR++AQAAR +DT ALFQAL Sbjct: 470 VLAETAARQSLDLAQAQYRLGAVGYLNLLTAQQTYQNAIVSRVRAQAARYSDTTALFQAL 529 Query: 415 GGGWWHQ 421 GGGWW + Sbjct: 530 GGGWWQR 536 >ref|YP_003750026.1| rnd efflux system, outer membrane lipoprotein [Ralstonia solanacearum PSI07] emb|CBJ35401.1| putative RND efflux system, outer membrane lipoprotein [Ralstonia solanacearum PSI07] Length = 485 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 249/419 (59%), Positives = 298/419 (71%) Query: 4 AQWWKVFGSPALDSLVDDALAHNADLEAAQAALRAARETAASQSGSLLPSVDLHFMPTRQ 63 QWW +FGS AL+ LV+ AL N DL++A+AALR A+E A+ G PSVD RQ Sbjct: 60 GQWWTMFGSGALNELVEAALKANPDLQSAEAALRVAQENLAAARGGFFPSVDAQMTSARQ 119 Query: 64 KVADTLASPLADNSYIYNLHTAQLNIAYAPDIFGGTRRQIEAGRAQAEVQRFQRNATYLT 123 K A+ LASPLA +Y+LHTAQL ++YAPD+FGG RRQ+EA AQAEV FQR A YLT Sbjct: 120 KTAEVLASPLAAGDLMYSLHTAQLTVSYAPDVFGGLRRQVEASAAQAEVAAFQREAAYLT 179 Query: 124 LVSNVVLAVVNEAALREQLQAAEQAAALAARQLDLVRQQRALGALGLADVAAQESLLAQA 183 L SNVV A + EA+LR Q+QA +A A+A+R L VR+Q+ G LG ADVAAQE+ LAQ Sbjct: 180 LTSNVVAAAIQEASLRAQIQATHEAIAVASRLLAAVRKQQKAGQLGAADVAAQEAALAQI 239 Query: 184 QAVLPPLRKQLAQQRDQIAVLVGRFPGQGGTPTLALSALKLPSELPLSLPSTLVQQRPDV 243 +A LPPL KQLA QRD I VL GRFP + T L +L LP LPLSLPS LV+QRPD+ Sbjct: 240 EATLPPLDKQLALQRDLITVLAGRFPSEAMAQTFELESLHLPQALPLSLPSRLVEQRPDI 299 Query: 244 RAAQAQRQAASAQVGVAIANRLPSFNITGTIGSSAQEFSKLFTSGPGFWTLGLDLATPLF 303 RAA+AQ AASAQ+GVA A RLPS +T +GS+A EFSKLF SG GFW L +A P+F Sbjct: 300 RAAEAQLHAASAQIGVATAARLPSITLTADLGSTALEFSKLFASGTGFWGLTGGIAQPIF 359 Query: 304 HGGSLQHQQRAAEAGLDQAGAQYRSVVLGAFQNVADSLHAIAADADGLAAATRAESAAQR 363 GG+L HQQRAA+A DQA AQYRS VL AFQNVAD+LHAI ADA L AAT A AA++ Sbjct: 360 RGGTLLHQQRAAQAAYDQAAAQYRSTVLTAFQNVADTLHAIDADARALQAATHAADAARK 419 Query: 364 SFDAAQAQWKAGIAGYPQVLLAQQNLLTASQSRLQAQAARLADTVALFQALGGGWWHQD 422 S AQ QW G+ YP VL A+Q + S QA+A RLAD+VAL QALGGGWW+++ Sbjct: 420 SLAIAQRQWTLGLIAYPAVLQAEQAYQQSLVSVAQARAGRLADSVALLQALGGGWWNRE 478