BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3162.p (321 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003741339.1| LysR family transcripitonal regulator [Erwin... 210 2e-52 ref|YP_004214050.1| LysR family transcriptional regulator [Rahne... 202 5e-50 ref|YP_001477349.1| LysR family transcriptional regulator [Serra... 192 7e-47 ref|YP_002943598.1| LysR family transcriptional regulator [Vario... 190 2e-46 ref|YP_004154151.1| LysR family transcriptional regulator [Vario... 187 2e-45 >ref|YP_003741339.1| LysR family transcripitonal regulator [Erwinia billingiae Eb661] emb|CAX59489.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661] Length = 322 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 120/307 (39%), Positives = 177/307 (57%), Gaps = 8/307 (2%) Query: 21 VTLRHLQALVTLADTNSFSRAADALAVTQPALSASIKQLENQLGTRLFDRTTHQISLTAQ 80 ++L+ +Q V LA SF+ A+ LA++QPALS++++Q+E+ LG +L RT +SLT Q Sbjct: 11 LSLKQIQYFVALAKLRSFTETANRLAISQPALSSALRQIESVLGGKLLKRTAQGVSLTEQ 70 Query: 81 GSVVLEYARHLLNTASNIFDDIEHAIGTGRH-RIRVGAIPSAVTLTAAVIARYNQAHDEH 139 G VL YA LLNTA + FDD++ + G +R+G +PS TL V+ + AH Sbjct: 71 GEAVLPYAERLLNTAHSAFDDMQQIMHQGGDGTLRIGLVPSVSTLLFPVVPQLLSAHFPA 130 Query: 140 VEILLQDMPNDALLDALHSGKLDFCVGIKPPDSLSSQTLETVTLFEDELVLIVSRRHPLS 199 + + D+ NDALL A+ +G +DF GI DS T+ L ED V ++ R PL+ Sbjct: 131 MRVEFHDLTNDALLLAVENGSVDF--GIGATDSTVPDTIAVYPLLEDPFVAVIRRDDPLA 188 Query: 200 GAKEVQWRQMAGEEIVLFTQGSVWEFASAALMQHGLASSRRYQVVHSESLYGVVRSGIAI 259 + WRQ+A E+ LF++G+V ++ + H L Y+V E+LYG+VRS +A+ Sbjct: 189 EGHNIPWRQLAKRELALFSKGNVSRLVTSMIESHRLQLRVGYRVDFQETLYGLVRSRLAL 248 Query: 260 GIMPSLYTTYLRDDSLHVAPLRQPTLKRKIVLMRRNEVSRSHWTDHCFREL-----RSDL 314 I+P LYT L D+ L V L+QPTL R + +MR+ RS +HCF+ L R Sbjct: 249 AILPELYTATLNDNELRVIHLQQPTLSRTVAMMRKPAPLRSPKIEHCFQFLLHSFHRQIA 308 Query: 315 KQANHWF 321 QA WF Sbjct: 309 GQAAIWF 315 >ref|YP_004214050.1| LysR family transcriptional regulator [Rahnella sp. Y9602] gb|ADW74923.1| transcriptional regulator, LysR family [Rahnella sp. Y9602] Length = 318 Score = 202 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 113/291 (38%), Positives = 172/291 (59%), Gaps = 3/291 (1%) Query: 21 VTLRHLQALVTLADTNSFSRAADALAVTQPALSASIKQLENQLGTRLFDRTTHQISLTAQ 80 ++L+ +Q VTLA SF+ A+ LA++QPALS++++Q+E+ LG +L +RT +SLT Q Sbjct: 11 LSLKQIQYFVTLAQLRSFTDTANRLAISQPALSSALRQIESVLGGKLLNRTAQGVSLTEQ 70 Query: 81 GSVVLEYARHLLNTASNIFDDIEHAIGTGRH-RIRVGAIPSAVTLTAAVIARYNQAHDEH 139 G VL YA LLNTA ++FDD++ + G +R+G +PS TL V+ + + Sbjct: 71 GEAVLPYAERLLNTALSVFDDMQQIMRQGGDGTLRIGLVPSVSTLLFPVVPQLLAEYFPD 130 Query: 140 VEILLQDMPNDALLDALHSGKLDFCVGIKPPDSLSSQTLETVTLFEDELVLIVSRRHPLS 199 + + D+ NDALL L +G +DF GI DS +++ L ED V ++ R PLS Sbjct: 131 MRVEFHDLTNDALLLELENGSVDF--GIGATDSTVPESIAVYPLLEDPFVAVIRRDDPLS 188 Query: 200 GAKEVQWRQMAGEEIVLFTQGSVWEFASAALMQHGLASSRRYQVVHSESLYGVVRSGIAI 259 + WRQ+ +I LF++G+V ++ H L Y+V E+LYG+VRS +A+ Sbjct: 189 QDHNIPWRQLLKRDIALFSKGNVSRLVTSLSESHRLNLRVSYRVDFQETLYGLVRSRLAL 248 Query: 260 GIMPSLYTTYLRDDSLHVAPLRQPTLKRKIVLMRRNEVSRSHWTDHCFREL 310 I+P LYT L D+ L V L+QPTL R + +MR+ RS T+ CF+ L Sbjct: 249 AILPELYTATLNDNELTVIHLQQPTLSRTVAMMRKPAPLRSPKTEQCFQFL 299 >ref|YP_001477349.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gb|ABV40221.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 310 Score = 192 bits (487), Expect = 7e-47, Method: Composition-based stats. Identities = 109/297 (36%), Positives = 171/297 (57%), Gaps = 3/297 (1%) Query: 21 VTLRHLQALVTLADTNSFSRAADALAVTQPALSASIKQLENQLGTRLFDRTTHQISLTAQ 80 ++L+ +Q VTLA F+ A+ LA++QPALS++++Q+E LG +L +RT ++LT Q Sbjct: 11 LSLKQIQYFVTLAQLRHFTDTANRLAISQPALSSALRQIETVLGGKLVNRTASAVTLTEQ 70 Query: 81 GSVVLEYARHLLNTASNIFDDIEH-AIGTGRHRIRVGAIPSAVTLTAAVIARYNQAHDEH 139 G+ +L +A LLN A FDD++ + G +R+G +PS L + + A+ Sbjct: 71 GAAILPHAERLLNVAQAAFDDMQRIMLAGGDGTVRIGLVPSVSGLLFPAVPQLLAANFPR 130 Query: 140 VEILLQDMPNDALLDALHSGKLDFCVGIKPPDSLSSQTLETVTLFEDELVLIVSRRHPLS 199 + I D ND+LL L +G +DF GI DS ++LE L ED V+++ R PL+ Sbjct: 131 LRIEFHDQTNDSLLLQLENGLIDF--GIGALDSSVPESLEIYPLQEDPFVVVMRRDDPLA 188 Query: 200 GAKEVQWRQMAGEEIVLFTQGSVWEFASAALMQHGLASSRRYQVVHSESLYGVVRSGIAI 259 + + WRQ+ +I +F++G++ A H L + R+QV E+LYG+VRS +A+ Sbjct: 189 ESHHLPWRQLTRRDIAVFSKGNISRLVLALAESHRLNLTARFQVDFLETLYGLVRSKLAV 248 Query: 260 GIMPSLYTTYLRDDSLHVAPLRQPTLKRKIVLMRRNEVSRSHWTDHCFRELRSDLKQ 316 I+P LYTT+L DD L V L+QP L R + LMR + + CF+ L D +Q Sbjct: 249 AILPQLYTTHLNDDELTVVQLQQPMLSRTVALMRSAHRNHPALIEDCFQLLLQDFQQ 305 >ref|YP_002943598.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gb|ACS18332.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 318 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 122/301 (40%), Positives = 162/301 (53%), Gaps = 8/301 (2%) Query: 19 QKVTLRHLQALVTLADTNSFSRAADALAVTQPALSASIKQLENQLGTRLFDRTTHQISLT 78 + +TLR LQ L + F RAA LA+TQPALS +IKQ+E LG L R+TH++ LT Sbjct: 7 RALTLRQLQFFSVLVEEGHFGRAARRLAITQPALSNAIKQMEKLLGAELLTRSTHRLELT 66 Query: 79 AQGSVVLEYARHLLNTASNIFDDIEHAIGTGRHRIRVGAIPSAVTLTAAVIARYNQAHDE 138 G+ VL L+NT DIE + GR +RVG IPSA A + + QA Sbjct: 67 PVGAEVLARTDFLVNTFEVALRDIESTVQRGRAFVRVGVIPSASARVMAAASEFLQAGAR 126 Query: 139 HVEILLQDMPNDALLDALHSGKLDFCVG--IKPPDSLSSQTLETVTLFEDELVLIVSRRH 196 +EI +D P+ LL L SG+LD V +PP L+ V LF D LVL+V R H Sbjct: 127 ELEIAWRDAPSTTLLAELRSGQLDMAVAAITEPPGGLA-----CVDLFRDPLVLVVRRGH 181 Query: 197 PLSGAKEVQWRQMAGEEIVLFTQGSVWEFASAALMQHGLASSRRYQVVHSESLYGVVRSG 256 L+ A + W + E +VLF GS+ + A Q Y+V +SE+LY +VRSG Sbjct: 182 ALAAAGDASWEAIGKERLVLFESGSMPALGNPARAQFE-QGPEPYRVSYSETLYALVRSG 240 Query: 257 IAIGIMPSLYTTYLRDDSLHVAPLRQPTLKRKIVLMRRNEVSRSHWTDHCFRELRSDLKQ 316 A+G+MP LYTT LRD L V PL +P ++R++VL R+ LR L Q Sbjct: 241 QALGLMPRLYTTLLRDPELVVLPLLKPRVERRVVLAYLPGPMRNVAAQELIAFLRERLPQ 300 Query: 317 A 317 A Sbjct: 301 A 301 >ref|YP_004154151.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU36040.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 323 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 121/302 (40%), Positives = 166/302 (54%), Gaps = 9/302 (2%) Query: 19 QKVTLRHLQALVTLADTNSFSRAADALAVTQPALSASIKQLENQLGTRLFDRTTHQISLT 78 + +TLR LQ L + F RAA LA+TQPALS +IKQ+E LG L R+TH++ LT Sbjct: 7 RALTLRQLQFFSVLVEEGQFGRAARRLAITQPALSNAIKQMEKLLGAELLTRSTHRLELT 66 Query: 79 AQGSVVLEYARHLLNTASNIFDDIEHAIGTGRHRIRVGAIPSAVTLTAAVIARY-NQAHD 137 G+ VL L+NT DIE + GR +RVG IPSA AA ++ + Q Sbjct: 67 PVGAEVLARTDFLVNTFEVALRDIESTVQRGRAFVRVGVIPSASARVAAAVSEFLQQDGQ 126 Query: 138 EHVEILLQDMPNDALLDALHSGKLDFCVG--IKPPDSLSSQTLETVTLFEDELVLIVSRR 195 VE+ +D P+ LL L SG+LD V +PP+ L+ + LF D LVL+V R Sbjct: 127 REVELAWRDAPSTTLLAELRSGQLDMAVAAITEPPNGLT-----CIDLFRDPLVLVVRRD 181 Query: 196 HPLSGAKEVQWRQMAGEEIVLFTQGSVWEFASAALMQHGLASSRRYQVVHSESLYGVVRS 255 HPL+ A + W + E +VLF GS+ + A Q + Y+V +SE+LY +VRS Sbjct: 182 HPLAAAGDANWEAIGKERLVLFESGSMPALGNPARAQFA-QGAEPYRVSYSETLYALVRS 240 Query: 256 GIAIGIMPSLYTTYLRDDSLHVAPLRQPTLKRKIVLMRRNEVSRSHWTDHCFRELRSDLK 315 G A+G+MP LYT LRD L V PL +P ++R++VL R+ LR+ L Sbjct: 241 GQALGLMPRLYTASLRDPELAVVPLLKPRIERRVVLAYLPGPMRNVVAQELIALLRNRLP 300 Query: 316 QA 317 QA Sbjct: 301 QA 302