BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3161.p (386 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004349462.1| porin, Gram-negative type [Burkholderia glad... 409 e-112 ref|ZP_02908632.1| porin Gram-negative type [Burkholderia ambifa... 409 e-112 ref|ZP_02892512.1| porin Gram-negative type [Burkholderia ambifa... 407 e-111 ref|ZP_04943189.1| Outer membrane protein (porin) [Burkholderia ... 406 e-111 ref|YP_622972.1| porin [Burkholderia cenocepacia AU 1054] >gi|11... 405 e-111 >ref|YP_004349462.1| porin, Gram-negative type [Burkholderia gladioli BSR3] gb|AEA63950.1| porin, Gram-negative type [Burkholderia gladioli BSR3] Length = 370 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 220/372 (59%), Positives = 274/372 (73%), Gaps = 2/372 (0%) Query: 15 MKKHWMIGALAIPAALAGAQAQAQSKVEIYGLISGGVGYLTNQGGPHNFEALSGTNQNPR 74 MK + LA+ A+A QA AQS V +YGLIS GVGY TNQGG + ++ALSGTNQNPR Sbjct: 1 MKTSLKLAPLAVLGAVA-IQASAQSSVTLYGLISAGVGYATNQGGKNAWQALSGTNQNPR 59 Query: 75 IGFRGQEDLGGGTRAIFTLENGFNMMTGAASQSGRLFGRQSWVGLASNSMGTVTLGRQYE 134 G +G+EDLGGG AIF LENGFN+MTG ASQ+GR+FGR + VGLA GT+T GRQY+ Sbjct: 60 WGLKGKEDLGGGLSAIFQLENGFNVMTGTASQNGRMFGRTALVGLADKRYGTLTFGRQYD 119 Query: 135 AVKDYLGPVVIASNGVHIGDNDNGYNNLRVQNSVKYVSPMFNDFNVTALYGFGEAAGDAS 194 A+ DY+GP++IASNGV+IGDNDNGYN++RVQNSVKYVSP + TA YGF A G A+ Sbjct: 120 AIHDYIGPIIIASNGVNIGDNDNGYNDIRVQNSVKYVSPEWFGLKGTAQYGFSNATGFAN 179 Query: 195 VNRVMSIGSGYKGGNFRWAVAFTQMDQPNSTKSPDGAMGNDYASSLLIFNKSAVNSSAGV 254 N S G GY+ G RW+ + Q + P S +PDGA+ NDYAS +LIF+KSA N S Sbjct: 180 -NNAYSFGLGYEHGPLRWSAVYAQYNNPFSPSNPDGAISNDYASPILIFDKSATNPSVYA 238 Query: 255 RRQRIAGTGGFYTVGKTDFGAMYSNVKYEYLDNTKLTLQNFDINLVHHYTPALNLGASYF 314 +RQRIAGTGGFYT+G F A++++V Y+YLDN+ L LQN +N+V+ TP+L LGA+Y Sbjct: 239 KRQRIAGTGGFYTIGHAQFAALFTDVHYDYLDNSHLHLQNMGVNVVYTMTPSLFLGAAYG 298 Query: 315 YTTGKYDTINKNPKWHQINLQADYFLSKRTDVAITYSYQLAAGDATKATIFGFPSSSDKK 374 +T G YD IN+ PKWHQ+NLQADYFLSK TD+A+T Q AAGDA+ A IF F S+ + Sbjct: 299 FTRGTYDVINQKPKWHQVNLQADYFLSKATDIALTVIVQQAAGDASHAQIFAFARSTTNR 358 Query: 375 QAVLMLGMRHVF 386 Q V LG+RHVF Sbjct: 359 QMVATLGIRHVF 370 >ref|ZP_02908632.1| porin Gram-negative type [Burkholderia ambifaria MEX-5] gb|EDT40237.1| porin Gram-negative type [Burkholderia ambifaria MEX-5] Length = 370 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 217/372 (58%), Positives = 277/372 (74%), Gaps = 2/372 (0%) Query: 15 MKKHWMIGALAIPAALAGAQAQAQSKVEIYGLISGGVGYLTNQGGPHNFEALSGTNQNPR 74 MK + + LA+ A A A AQS + +YGLIS GVGY TNQGG + ++ALSGTNQNPR Sbjct: 1 MKTLYKLAPLAMLGAFA-THAAAQSSITLYGLISAGVGYATNQGGKNAWQALSGTNQNPR 59 Query: 75 IGFRGQEDLGGGTRAIFTLENGFNMMTGAASQSGRLFGRQSWVGLASNSMGTVTLGRQYE 134 G +G+EDLG G AIF LENGFN+MTG A+Q+GR FGR ++VGLA + G++T GRQY+ Sbjct: 60 WGLKGKEDLGQGLSAIFQLENGFNVMTGTAAQNGREFGRMAYVGLADRTYGSLTFGRQYD 119 Query: 135 AVKDYLGPVVIASNGVHIGDNDNGYNNLRVQNSVKYVSPMFNDFNVTALYGFGEAAGDAS 194 A+ DY+GPV+IASNGV+IGDNDNGYN++RVQNSVKYVSP++ TALYGF A G A+ Sbjct: 120 AIHDYIGPVIIASNGVNIGDNDNGYNDIRVQNSVKYVSPVYYGLKFTALYGFSNATGFAN 179 Query: 195 VNRVMSIGSGYKGGNFRWAVAFTQMDQPNSTKSPDGAMGNDYASSLLIFNKSAVNSSAGV 254 N S G GY+ G RW+V + Q + P S+ +PDGA+ NDY S LLIF KSA++ + Sbjct: 180 -NSAYSFGLGYERGPLRWSVVYAQYNHPYSSTNPDGAIANDYGSPLLIFAKSAMSPAVFA 238 Query: 255 RRQRIAGTGGFYTVGKTDFGAMYSNVKYEYLDNTKLTLQNFDINLVHHYTPALNLGASYF 314 RQRIAGTGGFYT+G+ F A++++V+Y+YLDN+ L LQN +N+V+ TP L LGA+Y Sbjct: 239 SRQRIAGTGGFYTIGRAQFAALFTDVRYDYLDNSHLHLQNIGVNVVYTMTPQLFLGAAYA 298 Query: 315 YTTGKYDTINKNPKWHQINLQADYFLSKRTDVAITYSYQLAAGDATKATIFGFPSSSDKK 374 +T GKYD I+K PKWHQ+NLQADYFLSKRTDVA+T Q AAGDA A IF + S+ + Sbjct: 299 FTNGKYDVIDKRPKWHQVNLQADYFLSKRTDVALTVIAQQAAGDADHAQIFAYARSTGTR 358 Query: 375 QAVLMLGMRHVF 386 Q + LG+RHVF Sbjct: 359 QMMATLGVRHVF 370 >ref|ZP_02892512.1| porin Gram-negative type [Burkholderia ambifaria IOP40-10] gb|EDT01906.1| porin Gram-negative type [Burkholderia ambifaria IOP40-10] Length = 370 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 216/372 (58%), Positives = 277/372 (74%), Gaps = 2/372 (0%) Query: 15 MKKHWMIGALAIPAALAGAQAQAQSKVEIYGLISGGVGYLTNQGGPHNFEALSGTNQNPR 74 MK + + LA+ A A A AQS + +YGLIS GVGY TNQGG + ++ALSGTNQNPR Sbjct: 1 MKTLYKLAPLAMLGAFA-THAGAQSSITLYGLISAGVGYATNQGGKNAWQALSGTNQNPR 59 Query: 75 IGFRGQEDLGGGTRAIFTLENGFNMMTGAASQSGRLFGRQSWVGLASNSMGTVTLGRQYE 134 G +G+EDLG G AIF LENGFN+MTG A+Q+GR FGR ++VGLA + G++T GRQY+ Sbjct: 60 WGLKGKEDLGQGLSAIFQLENGFNVMTGTAAQNGREFGRMAYVGLADRTYGSLTFGRQYD 119 Query: 135 AVKDYLGPVVIASNGVHIGDNDNGYNNLRVQNSVKYVSPMFNDFNVTALYGFGEAAGDAS 194 A+ DY+GPV+IASNGV+IGDNDNGYN++RVQNSVKYVSP++ TALYGF A G A+ Sbjct: 120 AIHDYIGPVIIASNGVNIGDNDNGYNDIRVQNSVKYVSPVYYGLKFTALYGFSNATGFAN 179 Query: 195 VNRVMSIGSGYKGGNFRWAVAFTQMDQPNSTKSPDGAMGNDYASSLLIFNKSAVNSSAGV 254 N S G GY+ G RW+V + Q + P S+ +PDGA+ NDY S LLIF KSA++ + Sbjct: 180 -NSAYSFGLGYERGPLRWSVVYAQYNHPYSSTNPDGAIANDYGSPLLIFAKSAMSPAVFA 238 Query: 255 RRQRIAGTGGFYTVGKTDFGAMYSNVKYEYLDNTKLTLQNFDINLVHHYTPALNLGASYF 314 RQRIAGTGGFYT+G+ F A++++V+Y+YLD++ L LQN +N+V+ TP L LGA+Y Sbjct: 239 SRQRIAGTGGFYTIGRAQFAALFTDVRYDYLDHSHLHLQNIGVNVVYTMTPQLFLGAAYA 298 Query: 315 YTTGKYDTINKNPKWHQINLQADYFLSKRTDVAITYSYQLAAGDATKATIFGFPSSSDKK 374 +T GKYD I+K PKWHQ+NLQADYFLSKRTDVA+T Q AAGDA A IF + S+ + Sbjct: 299 FTNGKYDVIDKRPKWHQVNLQADYFLSKRTDVALTVIAQQAAGDAQHAQIFAYARSTGTR 358 Query: 375 QAVLMLGMRHVF 386 Q + LG+RHVF Sbjct: 359 QMMATLGVRHVF 370 >ref|ZP_04943189.1| Outer membrane protein (porin) [Burkholderia cenocepacia PC184] gb|EAY66360.1| Outer membrane protein (porin) [Burkholderia cenocepacia PC184] Length = 370 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 217/372 (58%), Positives = 277/372 (74%), Gaps = 2/372 (0%) Query: 15 MKKHWMIGALAIPAALAGAQAQAQSKVEIYGLISGGVGYLTNQGGPHNFEALSGTNQNPR 74 MK + + LA+ A A A AQS + +YGLIS GVG+ TNQGG + ++ALSGTNQNPR Sbjct: 1 MKTLYKLAPLAMLGAFA-THAGAQSSITLYGLISAGVGFATNQGGKNAWQALSGTNQNPR 59 Query: 75 IGFRGQEDLGGGTRAIFTLENGFNMMTGAASQSGRLFGRQSWVGLASNSMGTVTLGRQYE 134 G +G+EDLG G A+F LENGFN+MTG A+Q+GR FGR ++VGLA + G +TLGRQY+ Sbjct: 60 WGLKGKEDLGQGLSAVFQLENGFNVMTGTAAQNGREFGRMAYVGLADRTYGALTLGRQYD 119 Query: 135 AVKDYLGPVVIASNGVHIGDNDNGYNNLRVQNSVKYVSPMFNDFNVTALYGFGEAAGDAS 194 A+ DY+GPV+IASNGV+IGDNDNGYN++RVQNSVKYVSP++ TALYGF G A+ Sbjct: 120 AIHDYIGPVIIASNGVNIGDNDNGYNDIRVQNSVKYVSPVYYGLKFTALYGFSNTTGFAN 179 Query: 195 VNRVMSIGSGYKGGNFRWAVAFTQMDQPNSTKSPDGAMGNDYASSLLIFNKSAVNSSAGV 254 N S G GY+ G RW+V + Q + P S + DGA+ NDYAS LLIF+KSA++ +A Sbjct: 180 -NSAYSFGLGYERGPLRWSVVYAQYNHPYSATNQDGAIANDYASPLLIFSKSAMSPAAYA 238 Query: 255 RRQRIAGTGGFYTVGKTDFGAMYSNVKYEYLDNTKLTLQNFDINLVHHYTPALNLGASYF 314 RQRIAGTGGFYT+G+ F AM+++V+Y+YLDN+ L LQN +N+V+ TP L LGA+Y Sbjct: 239 SRQRIAGTGGFYTIGRAQFAAMFTDVRYDYLDNSHLHLQNLGVNVVYTMTPQLFLGAAYA 298 Query: 315 YTTGKYDTINKNPKWHQINLQADYFLSKRTDVAITYSYQLAAGDATKATIFGFPSSSDKK 374 +T GKYD I+K PKWHQ+NLQADYFLSKRTDVA+T Q AAGDA A IF + S+ + Sbjct: 299 FTNGKYDVIDKRPKWHQVNLQADYFLSKRTDVALTVIAQQAAGDADHAQIFAYARSTGTR 358 Query: 375 QAVLMLGMRHVF 386 Q + LG+RHVF Sbjct: 359 QMMATLGVRHVF 370 >ref|YP_622972.1| porin [Burkholderia cenocepacia AU 1054] ref|YP_838890.1| porin [Burkholderia cenocepacia HI2424] gb|ABF77999.1| porin, Gram-negative type [Burkholderia cenocepacia AU 1054] gb|ABK11997.1| porin, Gram-negative type [Burkholderia cenocepacia HI2424] Length = 370 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 216/372 (58%), Positives = 277/372 (74%), Gaps = 2/372 (0%) Query: 15 MKKHWMIGALAIPAALAGAQAQAQSKVEIYGLISGGVGYLTNQGGPHNFEALSGTNQNPR 74 MK + + LA+ A A A AQS + +YGLIS GVG+ TNQGG + ++ALSGTNQNPR Sbjct: 1 MKTLYKLAPLAMLGAFA-THAGAQSSITLYGLISAGVGFATNQGGKNAWQALSGTNQNPR 59 Query: 75 IGFRGQEDLGGGTRAIFTLENGFNMMTGAASQSGRLFGRQSWVGLASNSMGTVTLGRQYE 134 G +G+EDLG G A+F LENGFN+MTG A+Q+GR FGR ++VGLA + G +TLGRQY+ Sbjct: 60 WGLKGKEDLGQGLSAVFQLENGFNVMTGTAAQNGREFGRMAYVGLADRTYGALTLGRQYD 119 Query: 135 AVKDYLGPVVIASNGVHIGDNDNGYNNLRVQNSVKYVSPMFNDFNVTALYGFGEAAGDAS 194 A+ DY+GPV+IASNGV+IGDNDNGYN++RVQ+SVKYVSP++ TALYGF G A+ Sbjct: 120 AIHDYIGPVIIASNGVNIGDNDNGYNDIRVQHSVKYVSPVYYGLKFTALYGFSNTTGFAN 179 Query: 195 VNRVMSIGSGYKGGNFRWAVAFTQMDQPNSTKSPDGAMGNDYASSLLIFNKSAVNSSAGV 254 N S G GY+ G RW+V + Q + P S + DGA+ NDYAS LLIF+KSA++ +A Sbjct: 180 -NSAYSFGLGYERGPLRWSVVYAQYNHPYSATNQDGAIANDYASPLLIFSKSAMSPAAYA 238 Query: 255 RRQRIAGTGGFYTVGKTDFGAMYSNVKYEYLDNTKLTLQNFDINLVHHYTPALNLGASYF 314 RQRIAGTGGFYT+G+ F AM+++V+Y+YLDN+ L LQN +N+V+ TP L LGA+Y Sbjct: 239 SRQRIAGTGGFYTIGRAQFAAMFTDVRYDYLDNSHLHLQNLGVNVVYTMTPQLFLGAAYA 298 Query: 315 YTTGKYDTINKNPKWHQINLQADYFLSKRTDVAITYSYQLAAGDATKATIFGFPSSSDKK 374 +T GKYD I+K PKWHQ+NLQADYFLSKRTDVA+T Q AAGDA A IF + S+ + Sbjct: 299 FTNGKYDVIDKRPKWHQVNLQADYFLSKRTDVALTVIAQQAAGDADHAQIFAYARSTGTR 358 Query: 375 QAVLMLGMRHVF 386 Q + LG+RHVF Sbjct: 359 QMMATLGVRHVF 370