BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3160.p (350 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001313337.1| extracellular solute-binding protein [Sinorh... 295 8e-78 gb|AEH83649.1| ABC transporter, periplasmic solute-binding prote... 295 9e-78 ref|NP_437317.1| spermidineputrescine ABC transporter substrate-... 295 1e-77 gb|AEG08195.1| extracellular solute-binding protein family 1 [Si... 294 1e-77 ref|YP_769456.1| solute-binding component of ABC transporter [Rh... 289 6e-76 >ref|YP_001313337.1| extracellular solute-binding protein [Sinorhizobium medicae WSM419] gb|ABR63404.1| extracellular solute-binding protein family 1 [Sinorhizobium medicae WSM419] Length = 340 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 147/323 (45%), Positives = 204/323 (63%), Gaps = 1/323 (0%) Query: 28 AHAEKRTLVLSAYPISQPLFNKLVYAPFKEKCGCEIVVETGNNADRIAKLDARRNNPVVD 87 A A+++TL +S Y +Q F +LVY PF+ KCGC +VVETGN+ +R+AK++A + NPVVD Sbjct: 19 ASAQEKTLTISVYGFAQDAFKELVYDPFEAKCGCNLVVETGNSVERLAKMEANKANPVVD 78 Query: 88 LVLLSDFGMLEAARKGLVQPLDYARLKNYSQIYPFARNPIGGNYAVGYTIYSVGLVYRSD 147 + ++S L A R GL++ +D ++L N+ ++Y A++P G +VGYT Y+ +VYRSD Sbjct: 79 MAVVSMADALSATRSGLIEKIDTSKLSNFDKLYDIAKDPNGDGMSVGYTFYATSIVYRSD 138 Query: 148 KTRAPQSWKDLWSPELKGRLALPDVSTTQGPLALQMADLAWGGKGGDYAAGMQKILSIKN 207 K SW DL +L G +ALP+V+T QGP L M A G D A + + K+ Sbjct: 139 KVEI-TSWADLLGDKLAGHVALPNVTTNQGPPTLYMIGEALGQNTPDLKAAIAAVGEKKD 197 Query: 208 NVVTFTKNSAQLSSLFAQDEIWVAPVARFTWSQLMKTGMPLKWAIPAEGQAAGMNVMGIV 267 ++VTF S+QL L Q+EIW AP+ RF+W K +P+KWA P EGQ GMNVM + Sbjct: 198 DIVTFYVKSSQLVQLMQQEEIWAAPIGRFSWEGFTKMDLPIKWATPKEGQTGGMNVMVLA 257 Query: 268 AKSKNADLAYQLMDFWLSKEVQTALAMELVDSPVNTQVVLPKDKAEFNTYGGEHIASLKF 327 SKN DLA Q MDFWLS E+QTALA +LVDSP N +V + + AE TYG E + +LK Sbjct: 258 KGSKNQDLALQFMDFWLSTEIQTALAEKLVDSPANKEVKVSPEIAENLTYGEETVRNLKL 317 Query: 328 VKPEDLLKYRSGWLEQWNKGISK 350 + L R WL +WN + + Sbjct: 318 IPSAVALDNREAWLSEWNAKVGQ 340 >gb|AEH83649.1| ABC transporter, periplasmic solute-binding protein [Sinorhizobium meliloti SM11] Length = 340 Score = 295 bits (754), Expect = 9e-78, Method: Composition-based stats. Identities = 147/326 (45%), Positives = 205/326 (62%), Gaps = 1/326 (0%) Query: 25 AAPAHAEKRTLVLSAYPISQPLFNKLVYAPFKEKCGCEIVVETGNNADRIAKLDARRNNP 84 A A A+++TL +S Y +Q F +LVY PF+ KCGC++VVETGN+ +R+AK++A + NP Sbjct: 16 AHGASAQEKTLTISVYGFAQDAFKELVYDPFEAKCGCKLVVETGNSVERLAKMEANKANP 75 Query: 85 VVDLVLLSDFGMLEAARKGLVQPLDYARLKNYSQIYPFARNPIGGNYAVGYTIYSVGLVY 144 VVD+ ++S L A R GL+ +D ++L N+ ++Y A++P G ++GYT Y+ +VY Sbjct: 76 VVDMAVVSMADALSATRSGLIDKIDTSKLSNFDKLYDIAKDPNGDGMSIGYTFYATSIVY 135 Query: 145 RSDKTRAPQSWKDLWSPELKGRLALPDVSTTQGPLALQMADLAWGGKGGDYAAGMQKILS 204 RSDK SW DL +L G +ALP+V+T QGP L M A G D A + + Sbjct: 136 RSDKVEV-TSWADLLGDKLAGHVALPNVTTNQGPPTLYMIGEALGQNTPDLKAAIAAVGE 194 Query: 205 IKNNVVTFTKNSAQLSSLFAQDEIWVAPVARFTWSQLMKTGMPLKWAIPAEGQAAGMNVM 264 K+++VTF S+QL L Q+EIW AP+ RF+W K +P+KWA P EGQ GMNVM Sbjct: 195 KKDDIVTFYVKSSQLVQLMQQEEIWAAPIGRFSWEGFTKMDLPIKWATPKEGQTGGMNVM 254 Query: 265 GIVAKSKNADLAYQLMDFWLSKEVQTALAMELVDSPVNTQVVLPKDKAEFNTYGGEHIAS 324 + SKN DLA Q MDFWLS E+QTALA +LVDSP N +V + + AE TYG E + + Sbjct: 255 VLAKGSKNQDLALQFMDFWLSTEIQTALAEKLVDSPANKEVKVSPEIAENLTYGEETVKN 314 Query: 325 LKFVKPEDLLKYRSGWLEQWNKGISK 350 LK + L R WL +WN + + Sbjct: 315 LKLIPSAVALDNREAWLSEWNAKVGQ 340 >ref|NP_437317.1| spermidineputrescine ABC transporter substrate-binding protein precursor [Sinorhizobium meliloti 1021] ref|YP_004557468.1| family 1 extracellular solute-binding protein [Sinorhizobium meliloti AK83] emb|CAC49177.1| ABC transporter, periplasmic solute-binding protein [Sinorhizobium meliloti 1021] gb|AEG56588.1| extracellular solute-binding protein family 1 [Sinorhizobium meliloti AK83] Length = 340 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 151/337 (44%), Positives = 211/337 (62%), Gaps = 2/337 (0%) Query: 14 LAMTGLGLSLLAAPAHAEKRTLVLSAYPISQPLFNKLVYAPFKEKCGCEIVVETGNNADR 73 +A T L L + A A A+++TL +S Y +Q F +LVY PF+ KCGC++VVETGN+ +R Sbjct: 6 IASTAL-LLIGAHGASAQEKTLTISVYGFAQDAFKELVYDPFEAKCGCKLVVETGNSVER 64 Query: 74 IAKLDARRNNPVVDLVLLSDFGMLEAARKGLVQPLDYARLKNYSQIYPFARNPIGGNYAV 133 +AK++A + NPVVD+ ++S L A R GL+ +D ++L N+ ++Y A++P G ++ Sbjct: 65 LAKMEANKANPVVDMAVVSMADALSATRAGLIDKIDTSKLSNFDKLYDIAKDPNGDGMSI 124 Query: 134 GYTIYSVGLVYRSDKTRAPQSWKDLWSPELKGRLALPDVSTTQGPLALQMADLAWGGKGG 193 GYT Y+ +VYRSDK SW DL +L G +ALP+V+T QGP L M A G Sbjct: 125 GYTFYATSIVYRSDKVEV-TSWADLLGDKLAGHVALPNVTTNQGPPTLYMIGEALGQNTP 183 Query: 194 DYAAGMQKILSIKNNVVTFTKNSAQLSSLFAQDEIWVAPVARFTWSQLMKTGMPLKWAIP 253 D A + + K+++VTF S+QL L Q+EIW AP+ RF+W K +P+KWA P Sbjct: 184 DLKAAIAAVGEKKDDIVTFYVKSSQLVQLMQQEEIWAAPIGRFSWEGFTKMDLPIKWATP 243 Query: 254 AEGQAAGMNVMGIVAKSKNADLAYQLMDFWLSKEVQTALAMELVDSPVNTQVVLPKDKAE 313 EGQ GMNVM + SKN DLA Q MDFWLS E+QTALA +LVDSP N +V + + AE Sbjct: 244 KEGQTGGMNVMVLAKGSKNQDLALQFMDFWLSTEIQTALAEKLVDSPANKEVKVSPEIAE 303 Query: 314 FNTYGGEHIASLKFVKPEDLLKYRSGWLEQWNKGISK 350 TYG E + +LK + L R WL +WN + + Sbjct: 304 NLTYGEETVKNLKLIPSAVALDNREAWLSEWNAKVGQ 340 >gb|AEG08195.1| extracellular solute-binding protein family 1 [Sinorhizobium meliloti BL225C] Length = 340 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 151/337 (44%), Positives = 211/337 (62%), Gaps = 2/337 (0%) Query: 14 LAMTGLGLSLLAAPAHAEKRTLVLSAYPISQPLFNKLVYAPFKEKCGCEIVVETGNNADR 73 +A T L L + A A A+++TL +S Y +Q F +LVY PF+ KCGC++VVETGN+ +R Sbjct: 6 IASTAL-LLIGAHGASAQEKTLTISVYGFAQDAFKELVYDPFEAKCGCKLVVETGNSIER 64 Query: 74 IAKLDARRNNPVVDLVLLSDFGMLEAARKGLVQPLDYARLKNYSQIYPFARNPIGGNYAV 133 +AK++A + NPVVD+ ++S L A R GL+ +D ++L N+ ++Y A++P G ++ Sbjct: 65 LAKMEANKANPVVDMAVVSMADALSATRAGLIDKIDTSKLSNFDKLYDIAKDPNGDGMSI 124 Query: 134 GYTIYSVGLVYRSDKTRAPQSWKDLWSPELKGRLALPDVSTTQGPLALQMADLAWGGKGG 193 GYT Y+ +VYRSDK SW DL +L G +ALP+V+T QGP L M A G Sbjct: 125 GYTFYATSIVYRSDKVEV-TSWADLLGDKLAGHVALPNVTTNQGPPTLYMIGEALGQNTP 183 Query: 194 DYAAGMQKILSIKNNVVTFTKNSAQLSSLFAQDEIWVAPVARFTWSQLMKTGMPLKWAIP 253 D A + + K+++VTF S+QL L Q+EIW AP+ RF+W K +P+KWA P Sbjct: 184 DLEAAIAAVGEKKDDIVTFYVKSSQLVQLMQQEEIWAAPIGRFSWEGFTKMDLPIKWATP 243 Query: 254 AEGQAAGMNVMGIVAKSKNADLAYQLMDFWLSKEVQTALAMELVDSPVNTQVVLPKDKAE 313 EGQ GMNVM + SKN DLA Q MDFWLS E+QTALA +LVDSP N +V + + AE Sbjct: 244 KEGQTGGMNVMVLAKGSKNQDLALQFMDFWLSTEIQTALAEKLVDSPANKEVKVSPEIAE 303 Query: 314 FNTYGGEHIASLKFVKPEDLLKYRSGWLEQWNKGISK 350 TYG E + +LK + L R WL +WN + + Sbjct: 304 NLTYGEETVKNLKLIPSAVALDNREAWLSEWNAKVGQ 340 >ref|YP_769456.1| solute-binding component of ABC transporter [Rhizobium leguminosarum bv. viciae 3841] emb|CAK09368.1| putative solute-binding component of ABC transporter [Rhizobium leguminosarum bv. viciae 3841] Length = 340 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 145/319 (45%), Positives = 203/319 (63%), Gaps = 1/319 (0%) Query: 32 KRTLVLSAYPISQPLFNKLVYAPFKEKCGCEIVVETGNNADRIAKLDARRNNPVVDLVLL 91 +RTL +S Y +Q F LVY PF+ KCGC++VVETGN+ +R+AK++A + NPVVDL + Sbjct: 23 ERTLTISVYAFAQDDFKTLVYDPFEAKCGCKLVVETGNSVERLAKMEANKANPVVDLAAV 82 Query: 92 SDFGMLEAARKGLVQPLDYARLKNYSQIYPFARNPIGGNYAVGYTIYSVGLVYRSDKTRA 151 S L A+R GL+ +D A+L +++++Y A++P G +VGYT Y+ + YRSDK + Sbjct: 83 SMADALAASRTGLIDKIDTAKLADFAKLYDVAKDPNGDGMSVGYTFYATSIAYRSDKMKI 142 Query: 152 PQSWKDLWSPELKGRLALPDVSTTQGPLALQMADLAWGGKGGDYAAGMQKILSIKNNVVT 211 SW DL PE G +A P+V+T QGP AL M LA G D ++ + K+ +VT Sbjct: 143 -DSWADLLKPEYVGHVAFPNVTTNQGPPALYMLGLALGKDTPDLKGPIEALGEKKDEIVT 201 Query: 212 FTKNSAQLSSLFAQDEIWVAPVARFTWSQLMKTGMPLKWAIPAEGQAAGMNVMGIVAKSK 271 F + S+QL L Q+EIW AP+ RF+W+ K +P+ WA P EGQ GMNV+ + SK Sbjct: 202 FYEKSSQLVQLMQQEEIWAAPIGRFSWAGFTKLDVPVAWATPKEGQTGGMNVLVLTKGSK 261 Query: 272 NADLAYQLMDFWLSKEVQTALAMELVDSPVNTQVVLPKDKAEFNTYGGEHIASLKFVKPE 331 N DLA Q MDFWLS E+QT LA +L+DSP N++V L + A TYG E SLK + Sbjct: 262 NQDLALQFMDFWLSTEIQTKLAEKLIDSPANSEVKLSEAAANNLTYGEETAKSLKLIPSA 321 Query: 332 DLLKYRSGWLEQWNKGISK 350 L R+GWL+ WN+ + + Sbjct: 322 VALDNRAGWLKTWNEKVGQ 340