BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3152.p (565 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774726.1| methyl-accepting chemotaxis domain-containin... 371 e-100 ref|YP_443039.1| methyl-accepting chemotaxis domain-containing p... 284 3e-74 ref|ZP_02388833.1| methyl-accepting chemotaxis domain protein [B... 281 2e-73 ref|ZP_05587531.1| methyl-accepting chemotaxis domain-containing... 281 2e-73 ref|ZP_02402998.1| methyl-accepting chemotaxis protein [Burkhold... 275 2e-71 >ref|YP_003774726.1| methyl-accepting chemotaxis domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ62818.1| methyl-accepting chemotaxis domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 568 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 234/554 (42%), Positives = 365/554 (65%), Gaps = 2/554 (0%) Query: 1 MRQIVSALSVVVALLLALLIALSVAASEAEDRVAIASERREQTQRLVAELRQGADDLSRL 60 +RQI L+ V+ +L+ L++ ++A + R+ A+E R + L ELRQ +DDL+RL Sbjct: 11 IRQIFIMLTAVITVLMTLIVLAALAVDRYDARLNAANESRYASFLLATELRQSSDDLTRL 70 Query: 61 ARSFVATGEYQAERQYQAIAEIRDGRRPRPEHYERIYWDLVDADGRPPRPDSAVIVPLGE 120 AR++V TG+ E+QY+AI +IR+G++ RPEHY RIYWD V ADG+ PRPDS V L + Sbjct: 71 ARTYVVTGDPSYEQQYEAILDIRNGKKARPEHYGRIYWDFVAADGKAPRPDSNQHVALTD 130 Query: 121 LMQQAGFSRDEMAKVEEVRSRSGAVLAIELRAMELVRRHTRDRVLIDAALREDP-LQQAR 179 LM+ AGF+ EM K+EE ++ S A++ E+ AM +V+ D + R DP L QAR Sbjct: 131 LMRAAGFTAAEMGKLEEAKNNSDALVKTEVIAMNMVKGLYAD-AQGNFTKRADPDLAQAR 189 Query: 180 RLLHDPRYELARAAMMRPLEALQAMLDTRTRADILQARQARERLDTVVAAVGGLLLLVMI 239 L+H+ Y + +A +MRP++ A+LD RT + AR + T+ ++ + L+V+ Sbjct: 190 ELMHNHAYHVYKAKIMRPVDEFFALLDARTTEQVESARAQATHMATLFYSLIAIALVVLA 249 Query: 240 VSVASLYRLVTGPLSQAAQVASRVAKGDLCGRIDGGFHGETGQLLSSLQDMRQGLSHLVR 299 ++ +Y + PL+ AA VA RVA GDL +ID GETG+LL +L M+ GL +V Sbjct: 250 CTLMLVYHAIRNPLAHAASVARRVAHGDLTAQIDPAIKGETGELLEALTIMQSGLQTIVL 309 Query: 300 EVRHGARVMRGSAAEIADGALNLSTRAAQQAGSLQQTAVAMEQLNQAVQQSADRAQQACS 359 +VR+GA+ + SA EIA G L+LS+R QQA SL++TA +ME+L V+Q+A A+ A Sbjct: 310 DVRNGAQYINTSANEIASGTLDLSSRTEQQASSLEETASSMEELTSTVKQNAGNARLASE 369 Query: 360 LTRSAAQAALEGGVAVSEMVGNMHAVHLAAGRIEEIVAKLDGLSSQTNLLALNAAVEAAH 419 L +A+ A+ GG V+ +V M A++ ++ RI +I+A +DG++ QTN+LALNAAVEAA Sbjct: 370 LANTASGVAVRGGEVVARVVDTMGAINESSKRIVDIIAVIDGIAFQTNILALNAAVEAAR 429 Query: 420 AGTHGQAFSVVADEVRQLARRSADAAQEIRALLNDAMARINQGSRRAQTAGRSMQEVVAQ 479 AG G+ F+VVA EVR LA+RSA AA+EI+ L++++++++ GS AG +M+EVV Sbjct: 430 AGEQGRGFAVVATEVRSLAQRSAAAAKEIKTLIDNSVSKVEAGSTLVNEAGSTMREVVES 489 Query: 480 VGRLNQLIGEVASASSQQSAGARRISQSVSAIDQATQRNVLLVQQSSAAAEAMRLATERM 539 V R+ ++I +++AS +Q++G +I Q+++ +DQ TQ+N LV+Q+SAA+E+M++ ++ Sbjct: 490 VQRVTEIITGISNASQEQASGIEQIQQAINQMDQVTQQNAALVEQASAASESMQMQAHKL 549 Query: 540 AALMARFRLETGEG 553 L+ F+ T G Sbjct: 550 TDLVGAFKTPTAMG 563 >ref|YP_443039.1| methyl-accepting chemotaxis domain-containing protein [Burkholderia thailandensis E264] gb|ABC37240.1| methyl-accepting chemotaxis domain protein [Burkholderia thailandensis E264] Length = 605 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 199/530 (37%), Positives = 304/530 (57%), Gaps = 6/530 (1%) Query: 29 AEDRVAIASERREQTQRLVAELRQGADDLSRLARSFVATGEYQAERQYQAIAEIRDGRRP 88 A RVA A ++R + +L ELR+ +DDL+RLAR++VATG+ + E+QY + IR G+ P Sbjct: 62 ANRRVAHAYQQRYVSTQLANELRRSSDDLTRLARTYVATGDAKWEQQYNEVLAIRSGKAP 121 Query: 89 RPEHYERIYWDLVDADGRPPRPDSAVIVPLGELMQQAGFSRDEMAKVEEVRSRSGAVLAI 148 RP Y+RIYWD AD P RP + L ++M++AGF+ +E AK+ + S ++ Sbjct: 122 RPLDYDRIYWDFRAAD-EPMRPGHGETISLQDMMKRAGFTDEEFAKLHDAEQNSNDLVKT 180 Query: 149 ELRAMELVRRHTRDRVLIDAALREDPLQQARRLLHDPRYELARAAMMRPLEALQAMLDTR 208 E AM LV+ T D L +AR L+ D Y +A +M P++ +LD R Sbjct: 181 ETIAMNLVKGLTPDDAGNFTKQGPPDLDKARSLMFDANYHRFKAKIMHPIDDFLKLLDAR 240 Query: 209 TRADILQARQARERLDTVVAAVGGLLLLVMIVSVASLYRLVTGPLSQAAQVASRVAKGDL 268 T I A+ + TV A V L + + +L+R V L AA A RVA GDL Sbjct: 241 TEGAIASAQATAQTWKTVSAGVAIGALACFALMLHALFRRVIAGLEVAASTAGRVAAGDL 300 Query: 269 CG-----RIDGGFHGETGQLLSSLQDMRQGLSHLVREVRHGARVMRGSAAEIADGALNLS 323 R+D E +++ SLQ M GL +V +VR G + + EI G +LS Sbjct: 301 TSHFDADRVDPQAKNEISRVMRSLQTMNDGLVRIVSDVRSGTDAIATVSHEIMAGNNDLS 360 Query: 324 TRAAQQAGSLQQTAVAMEQLNQAVQQSADRAQQACSLTRSAAQAALEGGVAVSEMVGNMH 383 R QQA SLQ+TA +M +L V+ + + A+QA + A +G V+V +V ++ Sbjct: 361 ARTEQQAASLQETAASMSELTATVKLNLENARQANMIGSDAVSTVEQGAVSVEHLVTTVN 420 Query: 384 AVHLAAGRIEEIVAKLDGLSSQTNLLALNAAVEAAHAGTHGQAFSVVADEVRQLARRSAD 443 A+ ++G+I +I++ ++G++ QTN+LALNAAVEAA AG G+ F+VVA EVR LA+RS+ Sbjct: 421 AISASSGKIADIISLIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSA 480 Query: 444 AAQEIRALLNDAMARINQGSRRAQTAGRSMQEVVAQVGRLNQLIGEVASASSQQSAGARR 503 AA+EI+ L+ ++ + G +A GR + EV + R+ L+GE+ SAS +QS G + Sbjct: 481 AAKEIKDLIETSIDTVRDGVSKADEVGRHIVEVKRAIRRVADLVGEITSASEEQSRGIEQ 540 Query: 504 ISQSVSAIDQATQRNVLLVQQSSAAAEAMRLATERMAALMARFRLETGEG 553 + +VS +D+ TQ+N LV+Q++AA++AM + A + F+L G G Sbjct: 541 VDAAVSQMDRVTQQNAALVEQAAAASKAMDDQAGNLRAAASIFKLPGGAG 590 >ref|ZP_02388833.1| methyl-accepting chemotaxis domain protein [Burkholderia thailandensis Bt4] Length = 566 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 199/530 (37%), Positives = 305/530 (57%), Gaps = 6/530 (1%) Query: 29 AEDRVAIASERREQTQRLVAELRQGADDLSRLARSFVATGEYQAERQYQAIAEIRDGRRP 88 A RVA A ++R + +L ELR+ +DDL+RLAR++VATG+ + E+QY + IR G+ P Sbjct: 23 ANRRVAHAYQQRYVSTQLANELRRSSDDLTRLARTYVATGDAKWEQQYNEVLAIRSGKAP 82 Query: 89 RPEHYERIYWDLVDADGRPPRPDSAVIVPLGELMQQAGFSRDEMAKVEEVRSRSGAVLAI 148 RP Y+RIYWD AD P RP + L ++M++AGF+ +E AK+ + S ++ Sbjct: 83 RPLDYDRIYWDFRAAD-EPMRPGHGETISLQDMMKRAGFTDEEFAKLHDAEQNSNDLVKT 141 Query: 149 ELRAMELVRRHTRDRVLIDAALREDPLQQARRLLHDPRYELARAAMMRPLEALQAMLDTR 208 E AM LV+ T D L +AR L+ D Y +A +M P++ +LD R Sbjct: 142 ETIAMNLVKGLTPDDAGNFTKQGPPDLDKARSLMFDANYHRFKAKIMHPIDDFLKLLDAR 201 Query: 209 TRADILQARQARERLDTVVAAVGGLLLLVMIVSVASLYRLVTGPLSQAAQVASRVAKGDL 268 T I A+ + TV A V L + + +L+R V L AA A RVA GDL Sbjct: 202 TEGAIASAQATAQTWKTVSAGVAIGALACFALMLHALFRRVIAGLEVAASTAGRVAAGDL 261 Query: 269 CG-----RIDGGFHGETGQLLSSLQDMRQGLSHLVREVRHGARVMRGSAAEIADGALNLS 323 R+D E +++ SLQ M GL +V +VR G + ++ EI G +LS Sbjct: 262 TSHFDADRVDPQAKNEISRVMRSLQTMNDGLVRIVSDVRSGTDAIATASHEIMAGNNDLS 321 Query: 324 TRAAQQAGSLQQTAVAMEQLNQAVQQSADRAQQACSLTRSAAQAALEGGVAVSEMVGNMH 383 R QQA SLQ+TA +M +L V+ + + A+QA + A +G V+V +V ++ Sbjct: 322 ARTEQQAASLQETAASMSELTATVKLNLENARQANMIGSDAVSTVEQGAVSVEHLVTTVN 381 Query: 384 AVHLAAGRIEEIVAKLDGLSSQTNLLALNAAVEAAHAGTHGQAFSVVADEVRQLARRSAD 443 A+ ++G+I +I++ ++G++ QTN+LALNAAVEAA AG G+ F+VVA EVR LA+RS+ Sbjct: 382 AISASSGKIADIISLIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSA 441 Query: 444 AAQEIRALLNDAMARINQGSRRAQTAGRSMQEVVAQVGRLNQLIGEVASASSQQSAGARR 503 AA+EI+ L+ ++ + G +A GR + EV + R+ L+GE+ SAS +QS G + Sbjct: 442 AAKEIKDLIETSIDTVRDGVSKADEVGRHIVEVKRAIRRVADLVGEITSASEEQSRGIEQ 501 Query: 504 ISQSVSAIDQATQRNVLLVQQSSAAAEAMRLATERMAALMARFRLETGEG 553 + +VS +D+ TQ+N LV+Q++AA++AM + A + F+L G G Sbjct: 502 VDAAVSQMDRVTQQNAALVEQAAAASKAMDDQAGNLRAAASIFKLPGGAG 551 >ref|ZP_05587531.1| methyl-accepting chemotaxis domain-containing protein [Burkholderia thailandensis E264] Length = 566 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 199/530 (37%), Positives = 304/530 (57%), Gaps = 6/530 (1%) Query: 29 AEDRVAIASERREQTQRLVAELRQGADDLSRLARSFVATGEYQAERQYQAIAEIRDGRRP 88 A RVA A ++R + +L ELR+ +DDL+RLAR++VATG+ + E+QY + IR G+ P Sbjct: 23 ANRRVAHAYQQRYVSTQLANELRRSSDDLTRLARTYVATGDAKWEQQYNEVLAIRSGKAP 82 Query: 89 RPEHYERIYWDLVDADGRPPRPDSAVIVPLGELMQQAGFSRDEMAKVEEVRSRSGAVLAI 148 RP Y+RIYWD AD P RP + L ++M++AGF+ +E AK+ + S ++ Sbjct: 83 RPLDYDRIYWDFRAAD-EPMRPGHGETISLQDMMKRAGFTDEEFAKLHDAEQNSNDLVKT 141 Query: 149 ELRAMELVRRHTRDRVLIDAALREDPLQQARRLLHDPRYELARAAMMRPLEALQAMLDTR 208 E AM LV+ T D L +AR L+ D Y +A +M P++ +LD R Sbjct: 142 ETIAMNLVKGLTPDDAGNFTKQGPPDLDKARSLMFDANYHRFKAKIMHPIDDFLKLLDAR 201 Query: 209 TRADILQARQARERLDTVVAAVGGLLLLVMIVSVASLYRLVTGPLSQAAQVASRVAKGDL 268 T I A+ + TV A V L + + +L+R V L AA A RVA GDL Sbjct: 202 TEGAIASAQATAQTWKTVSAGVAIGALACFALMLHALFRRVIAGLEVAASTAGRVAAGDL 261 Query: 269 CG-----RIDGGFHGETGQLLSSLQDMRQGLSHLVREVRHGARVMRGSAAEIADGALNLS 323 R+D E +++ SLQ M GL +V +VR G + + EI G +LS Sbjct: 262 TSHFDADRVDPQAKNEISRVMRSLQTMNDGLVRIVSDVRSGTDAIATVSHEIMAGNNDLS 321 Query: 324 TRAAQQAGSLQQTAVAMEQLNQAVQQSADRAQQACSLTRSAAQAALEGGVAVSEMVGNMH 383 R QQA SLQ+TA +M +L V+ + + A+QA + A +G V+V +V ++ Sbjct: 322 ARTEQQAASLQETAASMSELTATVKLNLENARQANMIGSDAVSTVEQGAVSVEHLVTTVN 381 Query: 384 AVHLAAGRIEEIVAKLDGLSSQTNLLALNAAVEAAHAGTHGQAFSVVADEVRQLARRSAD 443 A+ ++G+I +I++ ++G++ QTN+LALNAAVEAA AG G+ F+VVA EVR LA+RS+ Sbjct: 382 AISASSGKIADIISLIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSA 441 Query: 444 AAQEIRALLNDAMARINQGSRRAQTAGRSMQEVVAQVGRLNQLIGEVASASSQQSAGARR 503 AA+EI+ L+ ++ + G +A GR + EV + R+ L+GE+ SAS +QS G + Sbjct: 442 AAKEIKDLIETSIDTVRDGVSKADEVGRHIVEVKRAIRRVADLVGEITSASEEQSRGIEQ 501 Query: 504 ISQSVSAIDQATQRNVLLVQQSSAAAEAMRLATERMAALMARFRLETGEG 553 + +VS +D+ TQ+N LV+Q++AA++AM + A + F+L G G Sbjct: 502 VDAAVSQMDRVTQQNAALVEQAAAASKAMDDQAGNLRAAASIFKLPGGAG 551 >ref|ZP_02402998.1| methyl-accepting chemotaxis protein [Burkholderia pseudomallei DM98] ref|ZP_04886539.1| methyl-accepting chemotaxis protein [Burkholderia pseudomallei 1655] gb|EDU07523.1| methyl-accepting chemotaxis protein [Burkholderia pseudomallei 1655] Length = 562 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 193/525 (36%), Positives = 309/525 (58%), Gaps = 6/525 (1%) Query: 29 AEDRVAIASERREQTQRLVAELRQGADDLSRLARSFVATGEYQAERQYQAIAEIRDGRRP 88 A RVA A ++R + +L ELR+ +DDL+RLAR++VATG+ + E+QY I IR G+ P Sbjct: 29 ANHRVAQAYQQRYVSTQLANELRRSSDDLTRLARTYVATGDAKWEQQYNEILAIRSGKAP 88 Query: 89 RPEHYERIYWDLVDADGRPPRPDSAVIVPLGELMQQAGFSRDEMAKVEEVRSRSGAVLAI 148 RP Y+RIYWD AD P R + + L E+M++AGF+ +E AK+ + S ++ Sbjct: 89 RPLDYDRIYWDFRAAD-EPLRAEQGETISLQEMMKRAGFTDEEFAKLHDAEQNSNDLVKT 147 Query: 149 ELRAMELVRRHTRDRVLIDAALREDPLQQARRLLHDPRYELARAAMMRPLEALQAMLDTR 208 E AM LV+ T D L++AR L+ D Y +A +M P++ +LDTR Sbjct: 148 ETVAMNLVKGLTPDDAGHFTKQGPPDLEKARALMFDANYHRFKAKIMHPIDDFLKLLDTR 207 Query: 209 TRADILQARQARERLDTVVAAVGGLLLLVMIVSVASLYRLVTGPLSQAAQVASRVAKGDL 268 T I +A+ + + + AAV +L + + +++ V L AA ASRVA GDL Sbjct: 208 TEGAIARAQASAQTWKIISAAVAIGILAFFALMLHMMFKRVLAGLEAAASTASRVAAGDL 267 Query: 269 CG-----RIDGGFHGETGQLLSSLQDMRQGLSHLVREVRHGARVMRGSAAEIADGALNLS 323 R+D E +++ +LQ M GL +V +VR G + ++ EI G +LS Sbjct: 268 TSHFDAHRVDPQAKDEISRVMRALQTMNDGLVRIVTDVRSGTDTIATASHEIMAGNNDLS 327 Query: 324 TRAAQQAGSLQQTAVAMEQLNQAVQQSADRAQQACSLTRSAAQAALEGGVAVSEMVGNMH 383 R QQA SLQ+TA +M +L V+ + + A+QA + +A +G V+V ++V ++ Sbjct: 328 ARTEQQAASLQETAASMSELTATVKLNLENARQANMIGSNAVSTVEKGSVSVEQLVTTVN 387 Query: 384 AVHLAAGRIEEIVAKLDGLSSQTNLLALNAAVEAAHAGTHGQAFSVVADEVRQLARRSAD 443 A+ +G+I +I++ ++G++ QTN+LALNAAVEAA AG G+ F+VVA EVR LA+RS+ Sbjct: 388 AISTNSGKIADIISLIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSS 447 Query: 444 AAQEIRALLNDAMARINQGSRRAQTAGRSMQEVVAQVGRLNQLIGEVASASSQQSAGARR 503 AA+EI+ L+ ++ + G +A G+ + EV + R+ L+GE+ +AS +Q+ G + Sbjct: 448 AAKEIKDLIETSIDTVRDGVSKADEVGQHIVEVKQAIRRVADLVGEITAASEEQTRGIEQ 507 Query: 504 ISQSVSAIDQATQRNVLLVQQSSAAAEAMRLATERMAALMARFRL 548 + +VS +D+ TQ+N LV+Q++AA++AM + A + F+L Sbjct: 508 VDAAVSQMDRVTQQNAALVEQAAAASKAMDDQAGNLRAAASIFKL 552