BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3148.p (287 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775848.1| lipoprotein [Herbaspirillum seropedicae SmR1... 280 2e-73 ref|ZP_02885847.1| conserved hypothetical protein [Burkholderia ... 97 3e-18 ref|YP_559514.1| hypothetical protein Bxe_A1492 [Burkholderia xe... 92 6e-17 ref|YP_003906395.1| hypothetical protein BC1003_1125 [Burkholder... 92 6e-17 ref|YP_001896253.1| hypothetical protein Bphyt_2634 [Burkholderi... 92 7e-17 >ref|YP_003775848.1| lipoprotein [Herbaspirillum seropedicae SmR1] gb|ADJ63940.1| lipoprotein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 166/276 (60%), Positives = 196/276 (71%), Gaps = 18/276 (6%) Query: 19 MKTLPLILLLSSASLLGALELPSARAASFDCSKAGSANEKTICRDAELSALDDQLGHAYR 78 M+TL L + + L AL S RAASFDC+KAGS+NEK IC DA+LSALDD+LG +R Sbjct: 1 MQTLARYSALFTFTALSALAWHSTRAASFDCAKAGSSNEKMICADAQLSALDDRLGALFR 60 Query: 79 RARQAAADQRAFRTASDAQWRWREDNCRDRACLLAWYQRRQTELEVQAAPAIAAALLTAK 138 +AR +A+D+RA R +D WRWRE +C DR+CLLAWYQRR EL+ QA A Sbjct: 61 QARASASDKRALRADADQHWRWREQHCHDRSCLLAWYQRRSIELQAQANAA--------- 111 Query: 139 GNATSPAPALVAVPPAQAPLAA--PAA-----PGLRLGLDARQIDHLAPAGSTPWPHYAR 191 +A+ P PAL P A LA P A L+LGL+ Q+ +AP G++PWPHY R Sbjct: 112 -SASDPVPALAHRAPKDAALAVNRPEAAVLTQSPLQLGLNPSQLAAIAPPGASPWPHYVR 170 Query: 192 AERGQYFYRDPEAGETQPLVAVRYYGIENGQYILEAVRGQTVLRYTCSADCRYIAQLALP 251 ERGQYFY DP+ E Q LV VRYYG+E+GQYILEAVRGQTVLRYTCS DC YI QL+LP Sbjct: 171 VERGQYFYEDPQTPERQ-LVGVRYYGMEHGQYILEAVRGQTVLRYTCSDDCSYIGQLSLP 229 Query: 252 GDVEKDTVIVSNDRASLPGLIVSDAVNGLLAPVQSR 287 GDVEKDTVIVSNDR SLP LIVSDA+NGLLAP +R Sbjct: 230 GDVEKDTVIVSNDRHSLPALIVSDAMNGLLAPSMTR 265 >ref|ZP_02885847.1| conserved hypothetical protein [Burkholderia graminis C4D1M] gb|EDT08504.1| conserved hypothetical protein [Burkholderia graminis C4D1M] Length = 164 Score = 97.1 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 56/143 (39%), Positives = 73/143 (51%), Gaps = 8/143 (5%) Query: 40 PSARAASFDCSKAGSANEKTICRDAELSALDDQLGHAYRRARQAAADQRAFRTASDAQWR 99 PSA+AASFDCSK S EK IC D LS LDD LG Y +AR+ +D+R F SD++W Sbjct: 17 PSAQAASFDCSKGRSLAEKIICNDPALSRLDDTLGRLYWKARRTVSDRRGFIADSDSKWA 76 Query: 100 WREDNCRDRACLLAWYQRRQTELEVQAAPAIAAALLTAKGNATSPAPALVAVPPAQAPLA 159 WRE NCRD CL WY R ELE + + + A+S P ++ A + Sbjct: 77 WREANCRDAECLGTWYAARIGELE--------QVIASVRMGASSVDPTMLQCTAAHPGIV 128 Query: 160 APAAPGLRLGLDARQIDHLAPAG 182 + + Q +H P G Sbjct: 129 IGEQCASVIKQNGSQWNHQTPHG 151 >ref|YP_559514.1| hypothetical protein Bxe_A1492 [Burkholderia xenovorans LB400] gb|ABE31462.1| hypothetical protein Bxe_A1492 [Burkholderia xenovorans LB400] Length = 222 Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 58/133 (43%), Positives = 68/133 (51%), Gaps = 22/133 (16%) Query: 37 LELPSARAASFDCSKAGSANEKTICRDAELSALDDQLGHAYRRARQAAADQRAFRTASDA 96 L P A AASFDC++ S EK IC D LS LDD LG Y +AR+ ++RAF T SD Sbjct: 41 LAHPLAHAASFDCNRGRSPTEKMICGDPALSKLDDALGQLYWKARRRVTNRRAFLTDSDG 100 Query: 97 QWRWREDNCRDRACLLAWYQRRQTELE--VQAAPAIAAALLTAKGNATSPAPALVAVPPA 154 +W WRE NCRD ACL WY R EL V++ A+ PPA Sbjct: 101 KWAWREANCRDAACLGTWYATRIEELRKLVESLQAVT--------------------PPA 140 Query: 155 QAPLAAPAAPGLR 167 P A PA P R Sbjct: 141 VTPSAPPAEPDTR 153 >ref|YP_003906395.1| hypothetical protein BC1003_1125 [Burkholderia sp. CCGE1003] gb|ADN57104.1| hypothetical protein BC1003_1125 [Burkholderia sp. CCGE1003] Length = 212 Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 47/83 (56%), Positives = 55/83 (66%) Query: 41 SARAASFDCSKAGSANEKTICRDAELSALDDQLGHAYRRARQAAADQRAFRTASDAQWRW 100 SA+A SFDCSK S EK IC D LS LDD LG Y +AR+ +D+RAF SD++W W Sbjct: 18 SAQATSFDCSKGRSLTEKMICNDPALSRLDDTLGQLYWKARRKVSDRRAFIADSDSKWAW 77 Query: 101 REDNCRDRACLLAWYQRRQTELE 123 RE NCRD ACL WY R EL+ Sbjct: 78 REANCRDAACLGTWYATRIDELQ 100 >ref|YP_001896253.1| hypothetical protein Bphyt_2634 [Burkholderia phytofirmans PsJN] gb|ACD17029.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN] Length = 192 Score = 92.4 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 58/134 (43%), Positives = 73/134 (54%), Gaps = 14/134 (10%) Query: 33 LLGALEL--PSARAASFDCSKAGSANEKTICRDAELSALDDQLGHAYRRARQAAADQRAF 90 L+ AL L P A A SFDC++ S EK IC + LS LDD LG Y +AR+ +++RAF Sbjct: 8 LIAALMLAHPVAHATSFDCNRGRSLTEKMICNNPALSKLDDTLGQLYWKARRRVSNRRAF 67 Query: 91 RTASDAQWRWREDNCRDRACLLAWYQRRQTELEVQAAPAIAAALLTAKGNATSPAPALVA 150 T SD++W WRE NCRD ACL WY R EL+ L +P P+ Sbjct: 68 LTDSDSKWAWREANCRDAACLGTWYATRIEELQT----------LIEGMQTGTPPPSATP 117 Query: 151 VPP--AQAPLAAPA 162 V P + PL APA Sbjct: 118 VDPDMRRRPLTAPA 131