BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3146.p (524 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775849.1| transcription regulator protein [Herbaspiril... 644 0.0 ref|NP_519978.1| transcription regulator protein [Ralstonia sola... 447 e-123 ref|YP_004685485.1| MocR family transcriptional regulator [Cupri... 443 e-122 ref|YP_726144.1| MocR family transcriptional regulator [Ralstoni... 442 e-122 ref|YP_001565516.1| transcriptional regulator [Delftia acidovora... 441 e-121 >ref|YP_003775849.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63941.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 441 Score = 644 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 356/441 (80%), Positives = 386/441 (87%), Gaps = 5/441 (1%) Query: 89 LEQAIADERLKPGDRLPPQRMLADRLDVDLTTVTRAYGEARRRQLLEGRGAAGSFVAAPK 148 +EQAI+DERL+PGDRLPPQR LA+ L VDLTTVTRAYGEARRR LLE RG+AG+FVAAPK Sbjct: 1 MEQAISDERLRPGDRLPPQRQLAEYLQVDLTTVTRAYGEARRRHLLEARGSAGTFVAAPK 60 Query: 149 VDLSQVIDLSMNIPPPPAGIDLDDLLRQGVSQVLMHSDVDLLMTYHLGGGSSADRAAGAM 208 VDLSQ+IDLSMNIPPPPAGIDL+DLLRQG+SQVL+HSD DLLMTYHLGGGSSADRAAGAM Sbjct: 61 VDLSQLIDLSMNIPPPPAGIDLNDLLRQGMSQVLIHSDADLLMTYHLGGGSSADRAAGAM 120 Query: 209 WLQDMLGPVEDERVLACPGAQSALAALLLSQTGPGETVLAEPLAYPGLLAAAAQLGRRVV 268 W+Q MLGPV++ RVLACPGAQSALAAL+LSQT PGE +LAEPLAYPGLL AA LGRRV+ Sbjct: 121 WMQAMLGPVDEARVLACPGAQSALAALVLSQTRPGEVILAEPLAYPGLLTVAAHLGRRVM 180 Query: 269 AVGVDHEGMRPDLLTTMVRKYGARLVYLNPTLQNPTTRTMPAARRAEIASVATRLDLRII 328 AV VD EGMRPDLL TM R++ ARLVYLNPTLQNPTTRTMPA RRAEIA++ATRLDLRII Sbjct: 181 AVDVDDEGMRPDLLMTMARRHQARLVYLNPTLQNPTTRTMPATRRAEIAALATRLDLRII 240 Query: 329 EDDPYWRFAAHAPRPLAYYAPRHVFYVSTLAKCLLPGLRTAYVLTPEGQAQDEVLAALRS 388 EDDPYWRFAAHAPRPLA+YAP HVFYVSTL+KCLLPGLRTAYVL PE QAQ+EVL ALRS Sbjct: 241 EDDPYWRFAAHAPRPLAHYAPGHVFYVSTLSKCLLPGLRTAYVLMPERQAQEEVLGALRS 300 Query: 389 FVLMSTPLTTALSTQWIHDGTAAMLTEGIRQEAWARQALALRTLGEEGPADSGGIHLWKA 448 FVLMSTPL TALSTQWIHDGTAA L EGIR EAWAR LALRTLG G + GGIHLWKA Sbjct: 301 FVLMSTPLMTALSTQWIHDGTAATLLEGIRSEAWARHELALRTLGGAGLSAGGGIHLWKA 360 Query: 449 LPEHWKGQDFVRKAREAGLNVVAQDSFQA---GDGEPARSGAPH--IRLSLGRSRSRFEL 503 LP HW+GQ+FV KAR+AGLNVV+Q SF G A SG IR+SLGRSRSRFEL Sbjct: 361 LPAHWQGQEFVLKARQAGLNVVSQSSFAVPPEGREPGADSGGQGACIRISLGRSRSRFEL 420 Query: 504 VHALRRLMELAHRRSLRETVV 524 V+ALRRLMELA RRS RE VV Sbjct: 421 VNALRRLMELAQRRSPREVVV 441 >ref|NP_519978.1| transcription regulator protein [Ralstonia solanacearum GMI1000] emb|CAD15559.1| probable transcriptional regulators containing a dna-binding hth domain and an aminotransferase domain transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 463 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 257/448 (57%), Positives = 314/448 (70%), Gaps = 6/448 (1%) Query: 70 WISRFTAHGGPRYLQIVGFLEQAIADERLKPGDRLPPQRMLADRLDVDLTTVTRAYGEAR 129 W R T GG RYLQIV F+EQAI D RL GDR+PPQR LA L VDLTTVTRAY EA+ Sbjct: 13 WDLRITRTGGARYLQIVEFIEQAIGDGRLAAGDRVPPQRSLAKALGVDLTTVTRAYTEAK 72 Query: 130 RRQLLEGRGAAGSFVAAPKVDLSQVIDLSMNIPPPPAGIDLDDLLRQGVSQVLMHSDVDL 189 RR L++ RGA G+F+AAP+ +L++V+D+SMN+PPPPAG+D DLLR+G+SQVL+HSD L Sbjct: 73 RRHLIDARGALGTFIAAPRAELARVVDMSMNVPPPPAGLDFQDLLRRGLSQVLLHSDPHL 132 Query: 190 LMTYHLGGGSSADRAAGAMWLQDMLGPVEDERVLACPGAQSALAALLLSQTGPGETVLAE 249 LMTY LGGGS ADRAAGA WL ++G V+ R++ CPGAQ+ALAA++LS T PG+ ++ E Sbjct: 133 LMTYQLGGGSPADRAAGANWLAQIVGAVDASRLVVCPGAQAALAAVILSHTRPGDAIVTE 192 Query: 250 PLAYPGLLAAAAQLGRRVVAVGVDHEGMRPDLLTTMVRKYGARLVYLNPTLQNPTTRTMP 309 PL YPG+ AAA QLGRRV+ V D +GMRPD L + GARL YLNPT QNPTT TMP Sbjct: 193 PLTYPGIRAAAVQLGRRVLTVACDADGMRPDALEAACAQ-GARLAYLNPTAQNPTTHTMP 251 Query: 310 AARRAEIASVATRLDLRIIEDDPYWRFAAHAPRPLAYYAPRHVFYVSTLAKCLLPGLRTA 369 AARRA+IA A R + I+EDDPYW AP PLA++AP +YVSTL+K L PGLRTA Sbjct: 252 AARRADIARTAERCGVTILEDDPYWLLTPDAPPPLAHFAPAQTYYVSTLSKTLSPGLRTA 311 Query: 370 YVLTPEGQAQDEVLAALRSFVLMSTPLTTALSTQWIHDGTAAMLTEGIRQEAWARQALAL 429 Y+L P G D++LAALR+F LM+ P+T ALSTQWI DG+A L +GIR EA+AR+ LA Sbjct: 312 YLLLPAGTRGDDLLAALRAFALMAAPVTAALSTQWIQDGSAPQLLDGIRTEAFARRELAD 371 Query: 430 RTLGEEGPADSGGIHLWKALPEHWKGQDFVRKAREAGLNVVAQDSFQAGDGEPARSGAPH 489 R L G A GIH+W LP+HW R A L V D+F G P Sbjct: 372 RWLSGIGQAPPTGIHVWHRLPDHWSTHQLTRAALAEDLRVTPSDAFCDGPNPPNA----- 426 Query: 490 IRLSLGRSRSRFELVHALRRLMELAHRR 517 IR+SLG R +L ALR+L L R+ Sbjct: 427 IRISLGGVDDRAQLSLALRKLAVLLERK 454 >ref|YP_004685485.1| MocR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI77004.1| transcriptional regulator MocR family [Cupriavidus necator N-1] Length = 460 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 247/440 (56%), Positives = 308/440 (70%), Gaps = 6/440 (1%) Query: 64 ADPSLDWISRFTAHGGPRYLQIVGFLEQAIADERLKPGDRLPPQRMLADRLDVDLTTVTR 123 +D S W T GG RYLQIV F+E+AI + RL GDR+PPQR LA L VDLTTVTR Sbjct: 4 SDVSAKWDLEITIGGGARYLQIVDFIERAIGEGRLVTGDRVPPQRSLAKTLRVDLTTVTR 63 Query: 124 AYGEARRRQLLEGRGAAGSFVAAPKVDLSQVIDLSMNIPPPPAGIDLDDLLRQGVSQVLM 183 AY EA+RR L++ RGA G+F+AAP+ +L++VID+SMN+PPPPAG+D DLLR+G+SQVL+ Sbjct: 64 AYNEAKRRHLIDARGALGTFIAAPRAELARVIDMSMNVPPPPAGLDFQDLLRRGLSQVLL 123 Query: 184 HSDVDLLMTYHLGGGSSADRAAGAMWLQDMLGPVEDERVLACPGAQSALAALLLSQTGPG 243 HSD LLMTY LGGGS+ADR+AGA+WL + GP+ R++ CPGAQ+ALAA++L++T PG Sbjct: 124 HSDPHLLMTYQLGGGSAADRSAGALWLAQIFGPIATGRLVVCPGAQAALAAVILARTRPG 183 Query: 244 ETVLAEPLAYPGLLAAAAQLGRRVVAVGVDHEGMRPDLLTTMVRKYGARLVYLNPTLQNP 303 + +++EPLAYPG+ AAAAQLGRRV+ VD +GM PD L R GA L YLNPT QNP Sbjct: 184 DAIVSEPLAYPGIRAAAAQLGRRVIIAQVDADGMLPDALEA-ARADGATLAYLNPTAQNP 242 Query: 304 TTRTMPAARRAEIASVATRLDLRIIEDDPYWRFAAHAPRPLAYYAPRHVFYVSTLAKCLL 363 TT TMPA+RR IA A D+ ++EDDPYW AP PL+ +AP +YVSTL+K L Sbjct: 243 TTHTMPASRREAIARAAAHCDVTLLEDDPYWLLTPSAPPPLSSFAPERTYYVSTLSKTLS 302 Query: 364 PGLRTAYVLTPEGQAQDEVLAALRSFVLMSTPLTTALSTQWIHDGTAAMLTEGIRQEAWA 423 PGLRTAYV+ PEG+ D++LA+LR+F LM+ P+T AL+TQWIHDG+A L +GIR EA A Sbjct: 303 PGLRTAYVMLPEGRRGDDLLASLRAFALMAAPMTAALATQWIHDGSAMQLLDGIRTEALA 362 Query: 424 RQALALRTLGEEGPADSGGIHLWKALPEHWKGQDFVRKAREAGLNVVAQDSFQAGDGEPA 483 R ALA R L G IH W LPEHW Q R A L V D+F G P Sbjct: 363 RCALASRWLSGIGQLPPSAIHAWHRLPEHWSAQQLTRAALAEDLRVTPSDAFWEGPNAPN 422 Query: 484 RSGAPHIRLSLGRSRSRFEL 503 IR+SLG R +L Sbjct: 423 A-----IRISLGGVEDRAQL 437 >ref|YP_726144.1| MocR family transcriptional regulator [Ralstonia eutropha H16] emb|CAJ92776.1| transcriptional regulator, MocR family [Ralstonia eutropha H16] Length = 490 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 247/440 (56%), Positives = 306/440 (69%), Gaps = 6/440 (1%) Query: 64 ADPSLDWISRFTAHGGPRYLQIVGFLEQAIADERLKPGDRLPPQRMLADRLDVDLTTVTR 123 A S W T GG RYLQIV F+E+AI + RL GDR+PPQR LA L VDLTTVTR Sbjct: 34 AKASAKWDLEITTGGGARYLQIVDFIERAIGEGRLVAGDRVPPQRSLAKSLRVDLTTVTR 93 Query: 124 AYGEARRRQLLEGRGAAGSFVAAPKVDLSQVIDLSMNIPPPPAGIDLDDLLRQGVSQVLM 183 AY EA+RR L++ RGA G+F+AAP+ +L++VID+SMN+PPPPAG+D DLLR+G+SQVL+ Sbjct: 94 AYNEAKRRHLIDARGALGTFIAAPRAELARVIDMSMNVPPPPAGLDFQDLLRRGLSQVLL 153 Query: 184 HSDVDLLMTYHLGGGSSADRAAGAMWLQDMLGPVEDERVLACPGAQSALAALLLSQTGPG 243 HSD LLMTY LGGGS+ADR+AG +WL + G V R++ CPGAQ+ALAA++L++T PG Sbjct: 154 HSDPHLLMTYQLGGGSAADRSAGTLWLAQIFGQVATARLVVCPGAQAALAAVILARTRPG 213 Query: 244 ETVLAEPLAYPGLLAAAAQLGRRVVAVGVDHEGMRPDLLTTMVRKYGARLVYLNPTLQNP 303 + +++EPLAYPG+ AAAAQLGRRV+ VD +GM PD L VR GA L YLNPT QNP Sbjct: 214 DAIVSEPLAYPGIRAAAAQLGRRVIIAPVDADGMLPDALEA-VRADGATLAYLNPTAQNP 272 Query: 304 TTRTMPAARRAEIASVATRLDLRIIEDDPYWRFAAHAPRPLAYYAPRHVFYVSTLAKCLL 363 TT TMPA+RR IA A D+ ++EDDPYW AP PL+ +AP +YVSTL+K L Sbjct: 273 TTHTMPASRREAIARAAAHCDVTLLEDDPYWLLTPSAPPPLSSFAPERTYYVSTLSKTLS 332 Query: 364 PGLRTAYVLTPEGQAQDEVLAALRSFVLMSTPLTTALSTQWIHDGTAAMLTEGIRQEAWA 423 PGLRTAYV+ PEG+ D++LA+LR+F LM+ P+T AL+TQWIHDG+A L +GIR EA A Sbjct: 333 PGLRTAYVMLPEGRRGDDLLASLRAFALMAAPMTAALATQWIHDGSAMHLLDGIRTEALA 392 Query: 424 RQALALRTLGEEGPADSGGIHLWKALPEHWKGQDFVRKAREAGLNVVAQDSFQAGDGEPA 483 R ALA R L G IH W LPEHW Q R A L V D+F G P Sbjct: 393 RCALASRWLSGIGQLPPSAIHAWHRLPEHWSAQQLTRAALAEDLRVTPSDAFWEGPNAPT 452 Query: 484 RSGAPHIRLSLGRSRSRFEL 503 IR+SLG R +L Sbjct: 453 A-----IRISLGGVEDRAQL 467 >ref|YP_001565516.1| transcriptional regulator [Delftia acidovorans SPH-1] gb|ABX37131.1| transcriptional regulator, GntR family with aminotransferase domain [Delftia acidovorans SPH-1] Length = 460 Score = 441 bits (1135), Expect = e-121, Method: Composition-based stats. Identities = 246/447 (55%), Positives = 309/447 (69%), Gaps = 5/447 (1%) Query: 70 WISRFTAHGGPRYLQIVGFLEQAIADERLKPGDRLPPQRMLADRLDVDLTTVTRAYGEAR 129 W+ + GGPR+LQI L+ A+AD LKPGDRLPPQR LA +LDVDLTTVTRAY EAR Sbjct: 9 WLPQLAVQGGPRFLQIADALQAAVADGSLKPGDRLPPQRRLAAQLDVDLTTVTRAYDEAR 68 Query: 130 RRQLLEGRGAAGSFVAAPKVDLSQVIDLSMNIPPPPAGIDLDDLLRQGVSQVLMHSDVDL 189 RRQLLEGRGA G++VAAPKV+L+ V+DLSMN PPPPAG+DLDD+L+QG++QVLM +D L Sbjct: 69 RRQLLEGRGARGTYVAAPKVELNAVLDLSMNTPPPPAGVDLDDMLKQGLAQVLMGADAQL 128 Query: 190 LMTYHLGGGSSADRAAGAMWLQDMLGPVEDERVLACPGAQSALAALLLSQTGPGETVLAE 249 LMTYHLGGGS +DR AGA WLQ M G V+ +++ CPGAQ+A+AAL+L+ T PG+ +L E Sbjct: 129 LMTYHLGGGSDSDRKAGARWLQPMFGDVDARQLVVCPGAQAAIAALVLALTEPGDVILTE 188 Query: 250 PLAYPGLLAAAAQLGRRVVAVGVDHEGMRPDLLTTMVRKYGARLVYLNPTLQNPTTRTMP 309 P +YPGL AAAAQ GRR++AV D +G+ P+ L R++ LVYLNPTLQNPT T+ Sbjct: 189 PTSYPGLRAAAAQFGRRIIAVQADSQGIMPERLEQACRQHRPGLVYLNPTLQNPTAITLA 248 Query: 310 AARRAEIASVATRLDLRIIEDDPYWRFAAHAPRPLAYYAPRHVFYVSTLAKCLLPGLRTA 369 RR EIAS+A R +RI+EDDPYW A P P+A +AP V+Y+STL+KCL PGLR A Sbjct: 249 EDRRQEIASIAKRCHVRIVEDDPYWLLADAPPPPIARFAPEQVYYISTLSKCLTPGLRVA 308 Query: 370 YVLTPEGQAQDEVLAALRSFVLMSTPLTTALSTQWIHDGTAAMLTEGIRQEAWARQALAL 429 +VL P+ + L ALRSF LM+TPLT AL+TQWI DG+A L EG+R+EA R +A Sbjct: 309 FVLLPDPHERQRFLVALRSFALMATPLTAALATQWILDGSAGKLMEGVRKEARLRHRMAR 368 Query: 430 RTLGEEGPADSGGIHLWKALPEHWKGQDFVRKAREAGLNVVAQDSFQAGDGEPARSGAPH 489 L G+H+W LP +W R A G+ V +F G GE + Sbjct: 369 DVLAGRYSGAGDGLHVWLELPSYWSPSQLARAADSEGIAVTPAQAFATG-GESVNA---- 423 Query: 490 IRLSLGRSRSRFELVHALRRLMELAHR 516 IR+SLG + R L L+RL L R Sbjct: 424 IRISLGSIKDRGRLQAGLQRLSHLLAR 450