BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3144.p (315 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775852.1| transcription regulator protein [Herbaspiril... 411 e-113 ref|ZP_06844516.1| transcriptional regulator, AraC family [Burkh... 307 2e-81 ref|YP_554894.1| AraC family transcriptional regulator [Burkhold... 307 2e-81 ref|YP_623228.1| AraC family transcriptional regulator [Burkhold... 300 2e-79 ref|ZP_04943385.1| Helix-turn-helix protein [Burkholderia cenoce... 298 8e-79 >ref|YP_003775852.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63944.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 235/309 (76%), Positives = 255/309 (82%), Gaps = 8/309 (2%) Query: 1 MSEPSLTDPLAEVVSLLQPAARYTKYVQGAGGWRVQRSRPELAFYCAVLEGSCRILRADA 60 MSEP TDPLAEVV+LLQPAARYTKYVQG+G WRVQRSRPELAFYCAVL+GSCR+ A Sbjct: 1 MSEP--TDPLAEVVTLLQPAARYTKYVQGSGAWRVQRSRPELAFYCAVLDGSCRLEPAAG 58 Query: 61 GAMTEETCIVLHAGDFFLAPALQGFTLASMDDCDDALLDEDNPPPRLPDGRYHLGTLGLP 120 A I+L AGDF LAPAL GF L S+ D LLDE NPPP LPDGRYHLGT P Sbjct: 59 PA------ILLEAGDFVLAPALHGFALTSLHTNDATLLDESNPPPLLPDGRYHLGTPEGP 112 Query: 121 PQVQLVVGHCVFASPDTPLLLSLLPSLVVVRAHARLHTLVQLVGDEYRAERPARDVVLAR 180 +VQLV GHCVF SPD+ LL+SLLP LVVVRAH RL TLVQLVGDE RA+RPAR+VVLAR Sbjct: 113 AEVQLVAGHCVFESPDSVLLVSLLPDLVVVRAHTRLATLVQLVGDESRAQRPAREVVLAR 172 Query: 181 LLEVLLIEALRSGTDTGAAATPGLLRGLGDVRLAAALRSIHARPADNWNVLRLARAAALS 240 LLEVLLIEALRS D AA+PGLLRGL DVRLA A+R++HA+PA +WNV RLAR AALS Sbjct: 173 LLEVLLIEALRSSNDPTVAASPGLLRGLADVRLAQAIRALHAQPAQDWNVPRLARVAALS 232 Query: 241 RSSFFERFRREVGLAPMEYLLAWRMALAKRLLLGEAASMATVAQQVGYSSASTFSVAFSR 300 RSSFFERFRREVGL PM+YLLAWRMALAKRLLL S+A VA QVGYSSASTFSVAFSR Sbjct: 233 RSSFFERFRREVGLTPMDYLLAWRMALAKRLLLRADGSIAEVALQVGYSSASTFSVAFSR 292 Query: 301 HVGVPPSQF 309 HVG+PPSQF Sbjct: 293 HVGLPPSQF 301 >ref|ZP_06844516.1| transcriptional regulator, AraC family [Burkholderia sp. Ch1-1] gb|EFG67842.1| transcriptional regulator, AraC family [Burkholderia sp. Ch1-1] Length = 303 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 174/307 (56%), Positives = 214/307 (69%), Gaps = 11/307 (3%) Query: 6 LTDPLAEVVSLLQPAARYTKYVQGAGGWRVQRSRPELAFYCAVLEGSCRILRADAGAMTE 65 + DPLAEVV+LLQP A ++K V GAG WRV RS FYC +L+GSCR++ Sbjct: 1 MVDPLAEVVTLLQPVAAFSKVVSGAGRWRVHRSEAGQPFYCVILDGSCRLV------TNG 54 Query: 66 ETCIVLHAGDFFLAPALQGFTLASMDDCDDALLDEDNPPPRLPDGRYHLGTLGLPPQVQL 125 I+L DF L P + FT++S++ + D P L DG + LG P VQL Sbjct: 55 REPIILQTDDFVLIPEVYNFTMSSLEPPEAE--GADTVPVALLDGGFRLGDGNGPSDVQL 112 Query: 126 VVGHCVFASPDTPLLLSLLPSLVVVRAHARLHTLVQLVGDEYRAERPARDVVLARLLEVL 185 +VGHCVF SPD LL+SLLP V VR RL TLV+LV +E R +RPARDVVLARLLEVL Sbjct: 113 LVGHCVFGSPDAALLVSLLPDFVHVRGERRLATLVKLVREESREQRPARDVVLARLLEVL 172 Query: 186 LIEALRSGTDTGAAATPGLLRGLGDVRLAAALRSIHARPADNWNVLRLARAAALSRSSFF 245 LIEALRS G AA+PGL+RGLGD RLA A+R +H P W V +LA AALSRS+FF Sbjct: 173 LIEALRSA---GTAASPGLVRGLGDARLALAIRQMHESPQKRWTVAQLADTAALSRSAFF 229 Query: 246 ERFRREVGLAPMEYLLAWRMALAKRLLLGEAASMATVAQQVGYSSASTFSVAFSRHVGVP 305 ERF R VG+APMEYLL+WRMALAK+LL + +A VA++VGYSSAS FSVAF+RHVG+P Sbjct: 230 ERFSRAVGVAPMEYLLSWRMALAKKLLRRKEGGVANVAERVGYSSASAFSVAFTRHVGLP 289 Query: 306 PSQFAQQ 312 P+Q+A++ Sbjct: 290 PTQYAKE 296 >ref|YP_554894.1| AraC family transcriptional regulator [Burkholderia xenovorans LB400] gb|ABE35544.1| transcriptional regulator, AraC family [Burkholderia xenovorans LB400] Length = 303 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 174/307 (56%), Positives = 213/307 (69%), Gaps = 11/307 (3%) Query: 6 LTDPLAEVVSLLQPAARYTKYVQGAGGWRVQRSRPELAFYCAVLEGSCRILRADAGAMTE 65 + DPLAEVV+LLQP A ++K V GAG WRV RS FYC +L+GSCR++ Sbjct: 1 MVDPLAEVVTLLQPVAAFSKVVSGAGRWRVHRSEAGQPFYCVILDGSCRLV------TNG 54 Query: 66 ETCIVLHAGDFFLAPALQGFTLASMDDCDDALLDEDNPPPRLPDGRYHLGTLGLPPQVQL 125 I+L DF L P + FT++S++ + +D P L DG + LG P VQL Sbjct: 55 REPIILQTDDFVLIPEVYDFTMSSLEPPEAEGVD--TVPVALLDGGFRLGDGNGPSDVQL 112 Query: 126 VVGHCVFASPDTPLLLSLLPSLVVVRAHARLHTLVQLVGDEYRAERPARDVVLARLLEVL 185 +VGHCVF SPD LL+SLLP V VR RL TLV+LV +E R +RPARDVVLARLLEVL Sbjct: 113 LVGHCVFGSPDAALLVSLLPDFVHVRGERRLATLVKLVREESREQRPARDVVLARLLEVL 172 Query: 186 LIEALRSGTDTGAAATPGLLRGLGDVRLAAALRSIHARPADNWNVLRLARAAALSRSSFF 245 IEALR G AA+PGL+RGLGD RLA A+R +H P W V +LA AALSRS+FF Sbjct: 173 FIEALRLA---GTAASPGLVRGLGDARLALAIRQMHESPQKRWTVAQLANTAALSRSAFF 229 Query: 246 ERFRREVGLAPMEYLLAWRMALAKRLLLGEAASMATVAQQVGYSSASTFSVAFSRHVGVP 305 ERF R VG+APMEYLL+WRMALAK+LL + +A VA++VGYSSAS FSVAF+RHVG+P Sbjct: 230 ERFSRAVGVAPMEYLLSWRMALAKKLLRRKEGGVANVAERVGYSSASAFSVAFTRHVGLP 289 Query: 306 PSQFAQQ 312 P+Q+AQQ Sbjct: 290 PTQYAQQ 296 >ref|YP_623228.1| AraC family transcriptional regulator [Burkholderia cenocepacia AU 1054] ref|YP_838634.1| AraC family transcriptional regulator [Burkholderia cenocepacia HI2424] gb|ABF78255.1| transcriptional regulator, AraC family [Burkholderia cenocepacia AU 1054] gb|ABK11741.1| transcriptional regulator, AraC family [Burkholderia cenocepacia HI2424] Length = 325 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 173/312 (55%), Positives = 214/312 (68%), Gaps = 10/312 (3%) Query: 4 PSLTDPLAEVVSLLQPAARYTKYVQGAGGWRVQRSRPELAFYCAVLEGSCRILRADAGAM 63 P++ DPL EVV+LLQP ARY+KYV+GA W + R+ FYCAVL+G CRI A+ Sbjct: 19 PTMIDPLTEVVTLLQPGARYSKYVRGASPWAISRTVAGEPFYCAVLDGGCRI------AI 72 Query: 64 TEETCIVLHAGDFFLAPALQGFTLASMDDCDDALLDEDNPPPRLPDGRYHLGTLGLPPQV 123 I L AGDF L PA G ++S++ + + PP L G Y +G P Sbjct: 73 DGHAPIELLAGDFMLIPAAYGVAMSSLEPPPPGV--DTAPPVMLDHGEYRIGDPANPVDT 130 Query: 124 QLVVGHCVFASPDTPLLLSLLPSLVVVRAHARLHTLVQLVGDEYRAERPARDVVLARLLE 183 +++ G+C F SPD LL+SLLP V VR RL TLVQLV DE RA+RPAR++VLARLLE Sbjct: 131 RMMAGNCSFGSPDAALLVSLLPRFVHVRGEPRLTTLVQLVRDESRAQRPAREIVLARLLE 190 Query: 184 VLLIEALRSGTDTGAAATPGLLRGLGDVRLAAALRSIHARPADNWNVLRLARAAALSRSS 243 VLLIEA+R TG A+PGL+RGL D RLAAALR +H RPA W ++ LA+ AALSRS+ Sbjct: 191 VLLIEAMR--FTTGTHASPGLVRGLADSRLAAALRRMHERPAHPWTIVELAKEAALSRST 248 Query: 244 FFERFRREVGLAPMEYLLAWRMALAKRLLLGEAASMATVAQQVGYSSASTFSVAFSRHVG 303 FFERF R VG+APMEYLL WRMALAK LL +A +A +VGYSSASTFSVAF+RHVG Sbjct: 249 FFERFSRAVGVAPMEYLLTWRMALAKDLLRRNEGRIAEIAARVGYSSASTFSVAFARHVG 308 Query: 304 VPPSQFAQQGKA 315 PP+Q+A+ +A Sbjct: 309 RPPAQYARDEQA 320 >ref|ZP_04943385.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] gb|EAY66556.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] Length = 325 Score = 298 bits (763), Expect = 8e-79, Method: Composition-based stats. Identities = 173/312 (55%), Positives = 213/312 (68%), Gaps = 10/312 (3%) Query: 4 PSLTDPLAEVVSLLQPAARYTKYVQGAGGWRVQRSRPELAFYCAVLEGSCRILRADAGAM 63 P+++DPL EVV+LLQP AR+ KYV+GA W + R+ FYCAVL+G CRI A+ Sbjct: 19 PAMSDPLTEVVTLLQPGARHAKYVRGASPWAINRTVAGEPFYCAVLDGGCRI------AI 72 Query: 64 TEETCIVLHAGDFFLAPALQGFTLASMDDCDDALLDEDNPPPRLPDGRYHLGTLGLPPQV 123 I L AGDF L PA G ++S+ + + PP L G Y +G P Sbjct: 73 DGHAPIELLAGDFMLIPAAYGVAMSSLKPPPPGV--DTAPPVMLDHGEYRIGDPANPVDT 130 Query: 124 QLVVGHCVFASPDTPLLLSLLPSLVVVRAHARLHTLVQLVGDEYRAERPARDVVLARLLE 183 +++ G+C F SPD LL+SLLP V VR RL TLVQLV DE RA+RPAR++VLARLLE Sbjct: 131 RMMAGNCSFGSPDAALLVSLLPRFVHVRGEPRLTTLVQLVRDESRAQRPAREIVLARLLE 190 Query: 184 VLLIEALRSGTDTGAAATPGLLRGLGDVRLAAALRSIHARPADNWNVLRLARAAALSRSS 243 VLLIEALR TG A+PGL+RGL D RLAAALR +H RPA W ++ LA+ AALSRS+ Sbjct: 191 VLLIEALR--FTTGTHASPGLVRGLADSRLAAALRRMHERPAHPWTIVELAKEAALSRST 248 Query: 244 FFERFRREVGLAPMEYLLAWRMALAKRLLLGEAASMATVAQQVGYSSASTFSVAFSRHVG 303 FFERF R VG+APMEYLL WRMALAK LL +A +A +VGYSSASTFSVAF+RHVG Sbjct: 249 FFERFSRAVGVAPMEYLLTWRMALAKDLLRRNEGRIAEIAARVGYSSASTFSVAFARHVG 308 Query: 304 VPPSQFAQQGKA 315 PP+Q+A+ +A Sbjct: 309 RPPAQYARDEQA 320