BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3143.p (212 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775853.1| GntR family transcription regulator protein ... 333 9e-90 ref|YP_004029241.1| transcriptional regulator, GntR family [Burk... 217 1e-54 ref|NP_768734.1| transcriptional regulator [Bradyrhizobium japon... 190 1e-46 ref|YP_001204485.1| GntR family transcriptional regulator [Brady... 173 2e-41 ref|YP_001238814.1| GntR family transcriptional regulator [Brady... 172 3e-41 >ref|YP_003775853.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63945.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 213 Score = 333 bits (855), Expect = 9e-90, Method: Composition-based stats. Identities = 186/204 (91%), Positives = 191/204 (93%) Query: 9 STVERIAEVLRTRIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEAEGLVLTLPRR 68 STV+RIAEVLR RIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEAEGLVLTLPRR Sbjct: 10 STVDRIAEVLRLRIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEAEGLVLTLPRR 69 Query: 69 GVRVTQVDRAAVKENAEMRGSLEILALRHSIRKFGPEHIARLEAAQEACAQAASLIEWDA 128 GVRVT VDRA VKENAEMRGSLEILALRHS RKFG EHIARLE A ACA A SL+EWDA Sbjct: 70 GVRVTMVDRATVKENAEMRGSLEILALRHSARKFGAEHIARLEQAHAACAAAGSLVEWDA 129 Query: 129 ANNLFHDILSSECGMPRLLAVLKQLQLTNSRYLFSTGFKRGWQPRSDHDHRLIIEALRDK 188 ANNLFHDILSSECGMPRLLAVLKQLQLTNSRYLFSTGFKRGWQPRSDHDH LIIEAL+++ Sbjct: 130 ANNLFHDILSSECGMPRLLAVLKQLQLTNSRYLFSTGFKRGWQPRSDHDHALIIEALKER 189 Query: 189 KTDRAVQLLSMHIGTMERVGFVAA 212 K DRAVQLLSMHIGTMERVGFVA Sbjct: 190 KIDRAVQLLSMHIGTMERVGFVAG 213 >ref|YP_004029241.1| transcriptional regulator, GntR family [Burkholderia rhizoxinica HKI 454] emb|CBW75097.1| Transcriptional regulator, GntR family [Burkholderia rhizoxinica HKI 454] Length = 216 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 123/201 (61%), Positives = 146/201 (72%) Query: 9 STVERIAEVLRTRIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEAEGLVLTLPRR 68 S VE I + LR RII GE+AGG ALRQDH+A+EF +SHVPVREAF++L+A GLV L RR Sbjct: 13 SLVEHIVDRLRERIISGELAGGTALRQDHIAKEFGASHVPVREAFQRLQAIGLVTILHRR 72 Query: 69 GVRVTQVDRAAVKENAEMRGSLEILALRHSIRKFGPEHIARLEAAQEACAQAASLIEWDA 128 GVRVT +DR A+KE A+MR LE LALRH++ EH LE+A AC A SL WDA Sbjct: 73 GVRVTVLDRVAIKEAADMRAVLEPLALRHAMPHLRAEHFEALESAHAACDAANSLASWDA 132 Query: 129 ANNLFHDILSSECGMPRLLAVLKQLQLTNSRYLFSTGFKRGWQPRSDHDHRLIIEALRDK 188 AN FH L C MPRLLA L LQLT+SR++ + G RGWQ RS+HDH+LII+AL+ Sbjct: 133 ANRAFHYALVRHCAMPRLLATLDVLQLTSSRFVLAVGRARGWQSRSNHDHQLIIDALKSH 192 Query: 189 KTDRAVQLLSMHIGTMERVGF 209 +RA QLLS HIGTMERVGF Sbjct: 193 DLERAAQLLSRHIGTMERVGF 213 >ref|NP_768734.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gb|AAG61069.1|AF322013_188 ID896 [Bradyrhizobium japonicum] dbj|BAC47359.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 211 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 107/208 (51%), Positives = 144/208 (69%) Query: 5 SEHPSTVERIAEVLRTRIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEAEGLVLT 64 +++ + V RIA+ + RII G +A GA LRQDHVA+EF SSHVPVREAFR L+A+ LV+ Sbjct: 4 ADNMTMVARIADSIAERIISGALAPGAPLRQDHVAREFNSSHVPVREAFRHLQAQHLVVA 63 Query: 65 LPRRGVRVTQVDRAAVKENAEMRGSLEILALRHSIRKFGPEHIARLEAAQEACAQAASLI 124 +PRRGVRV +D +VKE AEMR +LE++ALRHS + H+A++E A A ++ Sbjct: 64 VPRRGVRVAPLDTRSVKEIAEMRAALEVVALRHSGPRLTTAHLAQIELALIEGDNAKTIE 123 Query: 125 EWDAANNLFHDILSSECGMPRLLAVLKQLQLTNSRYLFSTGFKRGWQPRSDHDHRLIIEA 184 E++ AN FH L + CGMPRLLA L LQL NSR +F+ GW+PRS+ DHRLI++A Sbjct: 124 EFEMANRAFHQALVAPCGMPRLLASLDGLQLANSRLVFAMARSVGWRPRSNQDHRLILQA 183 Query: 185 LRDKKTDRAVQLLSMHIGTMERVGFVAA 212 LR + D A LL+ HI T+ER+ A+ Sbjct: 184 LRTRNVDHACNLLTRHIQTIERLALPAS 211 >ref|YP_001204485.1| GntR family transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL76248.1| putative transcriptional regulatory protein, GntR family [Bradyrhizobium sp. ORS 278] Length = 211 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 98/203 (48%), Positives = 135/203 (66%) Query: 6 EHPSTVERIAEVLRTRIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEAEGLVLTL 65 E +T RIAE + RI+ G + A LRQDH+A+EF+SSHVPVREAFRQLEA LV+ Sbjct: 4 ESLTTAHRIAEAITERIVSGALPADAPLRQDHIAREFKSSHVPVREAFRQLEALYLVVAT 63 Query: 66 PRRGVRVTQVDRAAVKENAEMRGSLEILALRHSIRKFGPEHIARLEAAQEACAQAASLIE 125 PRRGVRV +D A KE EMR +LE++ALR++ ++ P H+A +E A A ++ E Sbjct: 64 PRRGVRVAPLDAKATKEIVEMRAALEVVALRNAAPRYTPAHLAAIELALIEGDNAETISE 123 Query: 126 WDAANNLFHDILSSECGMPRLLAVLKQLQLTNSRYLFSTGFKRGWQPRSDHDHRLIIEAL 185 ++ AN FH L + C MPRLLA L L+L NSR + + GW+PRS+ DHR I++AL Sbjct: 124 FETANRAFHRALVAPCAMPRLLASLDGLRLANSRLVLAMARTAGWRPRSNGDHRQILQAL 183 Query: 186 RDKKTDRAVQLLSMHIGTMERVG 208 R+++ A +LL+ H T+ER+ Sbjct: 184 RERQIGHACELLTRHNQTIERLA 206 >ref|YP_001238814.1| GntR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ34908.1| transcriptional regulator, GntR family [Bradyrhizobium sp. BTAi1] Length = 211 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 97/205 (47%), Positives = 135/205 (65%) Query: 4 HSEHPSTVERIAEVLRTRIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEAEGLVL 63 E+ +T RIA+VL RI+ G + A LRQDH+A+EF SSHVPVREAFRQLEA LV+ Sbjct: 2 QDENLTTAHRIADVLTERIVSGALPPDAPLRQDHIAREFNSSHVPVREAFRQLEALYLVV 61 Query: 64 TLPRRGVRVTQVDRAAVKENAEMRGSLEILALRHSIRKFGPEHIARLEAAQEACAQAASL 123 PRRGVRV +D + KE EMR +LE++ALR++ ++ P +A +E A A ++ Sbjct: 62 AAPRRGVRVAPLDAKSTKEIVEMRVALEVVALRNAAPRYTPTQLAAIELALIEADNAETI 121 Query: 124 IEWDAANNLFHDILSSECGMPRLLAVLKQLQLTNSRYLFSTGFKRGWQPRSDHDHRLIIE 183 E++ AN FH L + C MPRLLA L L+L NSR + + GW+PR++ DHRLI++ Sbjct: 122 QEFETANRAFHRALVAPCAMPRLLASLDGLRLANSRLVLAMARNAGWRPRTNQDHRLILQ 181 Query: 184 ALRDKKTDRAVQLLSMHIGTMERVG 208 ALR ++ A +LL+ H T+ER+ Sbjct: 182 ALRARQIGHACELLTRHNQTIERLA 206