BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3137.p         (202 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003524367.1| hypothetical protein Slit_1749 [Sideroxydans...    85   5e-15
ref|ZP_01386050.1| hypothetical protein CferDRAFT_1160 [Chlorobi...    66   3e-09
ref|YP_003776526.1| hypothetical protein Hsero_3134 [Herbaspiril...    57   1e-06
ref|YP_003674443.1| hypothetical protein M301_1486 [Methylotener...    57   2e-06

>ref|YP_003524367.1| hypothetical protein Slit_1749 [Sideroxydans lithotrophicus ES-1]
 gb|ADE11980.1| hypothetical protein Slit_1749 [Sideroxydans lithotrophicus ES-1]
          Length = 210

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 3/182 (1%)

Query: 1   MQLDHLLARAQSLAYRISAEFNGQPLPDDRRACAAIGCLTVAQQHHCGIILLLRDDMPVH 60
           M+L H L++   LA  I  +     L    R   A  C  VAQ+HH  I+LLL    P+H
Sbjct: 1   MKLAHRLSQGHDLAAWIEQQVCDMQLSGSVRVRLAGTCFIVAQEHHQAILLLLSQTHPLH 60

Query: 61  ASAFALIGHQIEAAFNALWLWYCASEEELTRFLVDGSGKSMRQLVTQVDSVLAGRDGQEA 120
           A AFAL+    EA    LWL +CA + EL  F    S   M  +++ ++       GQ +
Sbjct: 61  APAFALVRPVFEAYLRGLWLAHCAKDAELEGFSHGKSPPKMPSILSAIEQTPGFDSGQLS 120

Query: 121 AILGGHWVRLSDFVFSGERRIRHWLDANEVDAMYSEEAVTDLVELSNSMA---ELGLASY 177
            I    W  +  +  +G +++  W   + +   YS+  V +++  + S+A    LGLA+ 
Sbjct: 121 DIYKQSWSDMCAYAHTGSQQVLRWNTGDAIQPNYSDAEVDEVLSFTGSIALLSTLGLAAI 180

Query: 178 RT 179
            T
Sbjct: 181 AT 182


>ref|ZP_01386050.1| hypothetical protein CferDRAFT_1160 [Chlorobium ferrooxidans DSM
           13031]
 gb|EAT59153.1| hypothetical protein CferDRAFT_1160 [Chlorobium ferrooxidans DSM
           13031]
          Length = 200

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 71/145 (48%), Gaps = 2/145 (1%)

Query: 26  LPDDRRACAAIGCLTVAQQHHCGIILLLRDDMPVHASAFALIGHQIEAAFNALWLWYCAS 85
           LP D R+  A+GC  VA +H   I LL   ++  H S  AL+    E+    +WL  CA+
Sbjct: 26  LPADERSLVAVGCFDVAIEHQAAIALLHSSEL--HGSEMALLRVLAESLVRGMWLLQCAT 83

Query: 86  EEELTRFLVDGSGKSMRQLVTQVDSVLAGRDGQEAAILGGHWVRLSDFVFSGERRIRHWL 145
           ++EL +F      KS  +L+ +++  +   +G  +      W  L+ F  +G  ++    
Sbjct: 84  DKELQKFKKGKLDKSFAELIGEIEGKIGTPNGVLSRFKETAWSALNGFTHTGFHQVSRRH 143

Query: 146 DANEVDAMYSEEAVTDLVELSNSMA 170
               V+  YSEE + + ++++ ++ 
Sbjct: 144 SGGRVEGNYSEEDLANALDVAGALG 168


>ref|YP_003776526.1| hypothetical protein Hsero_3134 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64618.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 124

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 6/112 (5%)

Query: 2   QLDHLLARAQSLAYRISAEFNGQPLPDDRRACAAIGCLTVAQQHHCGIILLLRDDMPVHA 61
           Q +HL+ +   L     +   G  LP D R+  A+GC  VA +H   I LL   ++  + 
Sbjct: 7   QFEHLMRQMMWL----DSLSTGLDLPVDERSLIALGCFDVAIEHQAAIALLCSSEL--YG 60

Query: 62  SAFALIGHQIEAAFNALWLWYCASEEELTRFLVDGSGKSMRQLVTQVDSVLA 113
           SAFAL+   +E+    +WL  CA+++++ +F      +S +QLV  ++  L 
Sbjct: 61  SAFALLKVLVESLIRGIWLRRCATDQQIRKFKTGDIDRSFKQLVADIEPKLG 112


>ref|YP_003674443.1| hypothetical protein M301_1486 [Methylotenera versatilis 301]
 gb|ADI29866.1| hypothetical protein M301_1486 [Methylotenera versatilis 301]
          Length = 198

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/206 (23%), Positives = 91/206 (44%), Gaps = 19/206 (9%)

Query: 1   MQLDHLLARAQSLAYRISAEFNGQPLPDDRRACAAIGCLTVAQQHHCGIILLLRDDMPVH 60
           M ++    R   LA  I   F  + LP D ++  AIGC  +  +HH  I +L++    ++
Sbjct: 1   MTVEQEYQRQVELAEWIDDNFKIE-LPADEKSLIAIGCFDITIEHHAAICVLIKAG--IY 57

Query: 61  ASAFALIGHQIEAAFNALWLWYCASEEELTRFLVDGSGKSMRQLVTQVDSVLAGRDGQEA 120
           AS FAL+    E+    L++ Y A+++E+  F  D      ++LV++++  +       +
Sbjct: 58  ASLFALLRSIFESCARGLFVNYSATDKEINLFKKDSLKIEFKELVSRIEQSIDANGSVLS 117

Query: 121 AILGGHWVRLSDFVFSG----ERRIRHWLDANEVDAMYSEEAVTDLVELSNSMAELGLAS 176
            +    W   + F  +G     RR +H +  +     Y E+ +   ++ S S+A +    
Sbjct: 118 QLHKSSWKFFNSFTHTGFQHITRRHKHGITGS---VNYPEQEIIQALKSSGSLALISAGE 174

Query: 177 YRTIHDKHITAVRSGTSNVVKMDLAK 202
                     AV SG  ++V   L K
Sbjct: 175 L---------AVLSGKQDLVNATLDK 191