BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3134.p         (97 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775862.1| branched-chain amino acid ABC transporter AT...   163   7e-39
ref|YP_003608045.1| ABC transporter [Burkholderia sp. CCGE1002] ...   129   1e-28
ref|ZP_02884221.1| ABC transporter related [Burkholderia gramini...   129   1e-28
ref|YP_004152546.1| ABC transporter [Variovorax paradoxus EPS] >...   128   2e-28
ref|YP_002942114.1| ABC transporter [Variovorax paradoxus S110] ...   128   2e-28

>ref|YP_003775862.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ63954.1| ABC-type branched-chain amino acid transport system, ATPase
           component protein [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score =  163 bits (413), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 93/97 (95%), Positives = 95/97 (97%)

Query: 1   MALSNAPRLLLMDEPTAGMAPQERQALMALTRRLVNERGIAVLFTEHSMDVVFSFADRII 60
           MALSNAPRLLLMDEPTAGMA QERQALMALTRRLVNERGIAVLFTEHSMDVVF+ ADRI+
Sbjct: 157 MALSNAPRLLLMDEPTAGMATQERQALMALTRRLVNERGIAVLFTEHSMDVVFAHADRIL 216

Query: 61  VLARGQLVADGAPAVVRADARVRELYFGSGASFGGAA 97
           VLARGQLVADGAPAVVRADARVRELYFGSGASFGGAA
Sbjct: 217 VLARGQLVADGAPAVVRADARVRELYFGSGASFGGAA 253


>ref|YP_003608045.1| ABC transporter [Burkholderia sp. CCGE1002]
 gb|ADG18534.1| ABC transporter related protein [Burkholderia sp. CCGE1002]
          Length = 270

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/93 (68%), Positives = 80/93 (86%)

Query: 1   MALSNAPRLLLMDEPTAGMAPQERQALMALTRRLVNERGIAVLFTEHSMDVVFSFADRII 60
           +AL+N P+LLLMDEPTAGMAP+ER  LMALT+RLV E  I VLFTEHSMDVVF++ADR+I
Sbjct: 157 IALANRPKLLLMDEPTAGMAPKERNELMALTKRLVTEHQIGVLFTEHSMDVVFAYADRMI 216

Query: 61  VLARGQLVADGAPAVVRADARVRELYFGSGASF 93
           VLARG+L+A+G    +R DARV+E+YFG+G +F
Sbjct: 217 VLARGKLIAEGDADTIRNDARVQEVYFGTGKTF 249


>ref|ZP_02884221.1| ABC transporter related [Burkholderia graminis C4D1M]
 gb|EDT10225.1| ABC transporter related [Burkholderia graminis C4D1M]
          Length = 269

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/93 (68%), Positives = 80/93 (86%)

Query: 1   MALSNAPRLLLMDEPTAGMAPQERQALMALTRRLVNERGIAVLFTEHSMDVVFSFADRII 60
           +AL+N P+LLLMDEPTAGMAP+ER  LMALTRRLV E+ I VLFTEHSMDVVF++ADR+I
Sbjct: 157 IALANRPKLLLMDEPTAGMAPKERNELMALTRRLVTEQKIGVLFTEHSMDVVFAYADRMI 216

Query: 61  VLARGQLVADGAPAVVRADARVRELYFGSGASF 93
           VLARG+L+A+G    +R D RV+E+YFG+G +F
Sbjct: 217 VLARGKLIAEGDGETIRNDPRVQEVYFGTGKTF 249


>ref|YP_004152546.1| ABC transporter [Variovorax paradoxus EPS]
 gb|ADU34435.1| ABC transporter related protein [Variovorax paradoxus EPS]
          Length = 265

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/93 (66%), Positives = 82/93 (88%)

Query: 1   MALSNAPRLLLMDEPTAGMAPQERQALMALTRRLVNERGIAVLFTEHSMDVVFSFADRII 60
           +A++N+P+LLLMDEPTAGMAP+ER +LMALT+ LV +RG+AVLFTEHSMDVVF++ADR+I
Sbjct: 157 IAMANSPKLLLMDEPTAGMAPKERNSLMALTKDLVIQRGMAVLFTEHSMDVVFAYADRMI 216

Query: 61  VLARGQLVADGAPAVVRADARVRELYFGSGASF 93
           VLARG+L+A G P  +R   +V+E+YFGSG +F
Sbjct: 217 VLARGRLIAQGKPLEIRDHPKVQEVYFGSGKTF 249


>ref|YP_002942114.1| ABC transporter [Variovorax paradoxus S110]
 gb|ACS16848.1| ABC transporter related [Variovorax paradoxus S110]
          Length = 268

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/93 (67%), Positives = 82/93 (88%)

Query: 1   MALSNAPRLLLMDEPTAGMAPQERQALMALTRRLVNERGIAVLFTEHSMDVVFSFADRII 60
           +A++NAP+LLLMDEPTAGMAP+ER +LMALT+ LV +RG+AVLFTEHSMDVVF++ADR+I
Sbjct: 157 IAMANAPKLLLMDEPTAGMAPKERNSLMALTKELVVQRGLAVLFTEHSMDVVFAYADRMI 216

Query: 61  VLARGQLVADGAPAVVRADARVRELYFGSGASF 93
           VLARG+L+A G P  +R   +V+E+YFGSG +F
Sbjct: 217 VLARGRLIAQGKPLEIRDHPKVQEVYFGSGKTF 249