BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3133.p (308 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_785216.1| FAD dependent oxidase [Bordetella avium 197N] >... 395 e-108 ref|ZP_08404318.1| FAD dependent oxidase [Hylemonella gracilis A... 393 e-107 ref|YP_001203910.1| putative D-lactate dehydrogenase [Bradyrhizo... 320 1e-85 ref|YP_932531.1| putative glycolate oxidase subunit GlcD [Azoarc... 312 5e-83 ref|YP_001238210.1| putative D-lactate dehydrogenase [Bradyrhizo... 309 4e-82 >ref|YP_785216.1| FAD dependent oxidase [Bordetella avium 197N] emb|CAJ48289.1| FAD dependent oxidase [Bordetella avium 197N] Length = 478 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 205/308 (66%), Positives = 242/308 (78%) Query: 1 MRELALGLEVVLPDGRIWNGLRGLRKDNTGYDLRDLFIGSEGTLGVITGAVLKLFSQPHA 60 MRELALGLEVVLP G IWNGLR LRKDNTGY LRDLFIGSEGTLGVIT AVLKL+ +P A Sbjct: 171 MRELALGLEVVLPTGEIWNGLRALRKDNTGYCLRDLFIGSEGTLGVITAAVLKLYPRPLA 230 Query: 61 RATAWVGCDSLAQLAELLARTRARCGDRLVAFEMMSAASLALVLQHVTDTRAPLAQPARY 120 R AW+GC +A L E+LAR R CGDRLVAFEM++ SL LVL+HV+DTR PL R+ Sbjct: 231 RVAAWLGCADMAALLEVLARMRNACGDRLVAFEMLTEESLELVLEHVSDTRRPLEGRHRF 290 Query: 121 NALIELADTEDLGLQSMLEELLGQAMEDALVTDAMLCSNGSQAAALWKIREGISQAQVRA 180 +AL+E+ADT L++++E LG+AME LV+DA++ +N +Q A WK+REGISQAQVRA Sbjct: 291 HALVEVADTCSDDLEALMESALGEAMEAGLVSDAVIGANLAQRQAFWKVREGISQAQVRA 350 Query: 181 GKVIKHDIALPISAIAEFVDQAERAIAACGLQAEIINFGHLGDGNLHFNVMIPLSSSYEE 240 GKVIKHDIALPIS + +FV+ A+ AI C +A IINFGH+GDGNLHFNV++P +S E Sbjct: 351 GKVIKHDIALPISRLPQFVEAAQAAILGCRNEARIINFGHMGDGNLHFNVLLPKETSAAE 410 Query: 241 VRQATLLLNRLVHDLVTEKQGSISAEHGVGQLRRDELRHYKSPLEMELMLRIKQAFDPNL 300 +NRLVHDLV E GSISAEHGVGQLRRDELRHYKS +E LM+ IKQ+ DPN Sbjct: 411 FSGLLSSMNRLVHDLVDEAGGSISAEHGVGQLRRDELRHYKSGVEFGLMMLIKQSLDPNQ 470 Query: 301 IMNPGKLL 308 IMNPGKLL Sbjct: 471 IMNPGKLL 478 >ref|ZP_08404318.1| FAD dependent oxidase [Hylemonella gracilis ATCC 19624] gb|EGI78515.1| FAD dependent oxidase [Hylemonella gracilis ATCC 19624] Length = 482 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 208/308 (67%), Positives = 239/308 (77%) Query: 1 MRELALGLEVVLPDGRIWNGLRGLRKDNTGYDLRDLFIGSEGTLGVITGAVLKLFSQPHA 60 MR+L LG+E VLPDGR+W+GLR LRKDNTGYDLR LFIGSEGTLGVIT AVLKL+ QP A Sbjct: 175 MRDLVLGVEAVLPDGRVWHGLRALRKDNTGYDLRHLFIGSEGTLGVITAAVLKLYPQPTA 234 Query: 61 RATAWVGCDSLAQLAELLARTRARCGDRLVAFEMMSAASLALVLQHVTDTRAPLAQPARY 120 RATAWVG + L L A+ R+RCG+RLVAFEMMS ASLALVL+HVT TRAPL Y Sbjct: 235 RATAWVGAGDIQSLVSLQAQLRSRCGERLVAFEMMSQASLALVLKHVTATRAPLQGEHAY 294 Query: 121 NALIELADTEDLGLQSMLEELLGQAMEDALVTDAMLCSNGSQAAALWKIREGISQAQVRA 180 +AL+ELADT GL +LE+ LG A+E+ LV D +C++ +QA ALWK+REGISQAQVRA Sbjct: 295 HALVELADTRAEGLPDLLEQSLGAALEEGLVQDVAICASTAQAHALWKLREGISQAQVRA 354 Query: 181 GKVIKHDIALPISAIAEFVDQAERAIAACGLQAEIINFGHLGDGNLHFNVMIPLSSSYEE 240 GK +KHDIALPISAIA FV A+ A+ A I+NFGHLGDGNLH+NV++PL + Y E Sbjct: 355 GKAVKHDIALPISAIAGFVADADAALRALLPGVRIVNFGHLGDGNLHYNVLLPLDTPYAE 414 Query: 241 VRQATLLLNRLVHDLVTEKQGSISAEHGVGQLRRDELRHYKSPLEMELMLRIKQAFDPNL 300 T LNR VHD V GSISAEHG+GQLRRDEL YKS LE ELM+RIKQA DPN Sbjct: 415 YAAHTATLNREVHDRVHALGGSISAEHGIGQLRRDELPRYKSALEFELMMRIKQALDPNQ 474 Query: 301 IMNPGKLL 308 IMNPGKLL Sbjct: 475 IMNPGKLL 482 >ref|YP_001203910.1| putative D-lactate dehydrogenase [Bradyrhizobium sp. ORS 278] emb|CAL75673.1| putative D-lactate dehydrogenase [Bradyrhizobium sp. ORS 278] Length = 471 Score = 320 bits (821), Expect = 1e-85, Method: Composition-based stats. Identities = 172/309 (55%), Positives = 220/309 (71%), Gaps = 1/309 (0%) Query: 1 MRELALGLEVVLPDGRIWNGLRGLRKDNTGYDLRDLFIGSEGTLGVITGAVLKLFSQPHA 60 MREL LGLEVVLPDGRIW+GLR LRKDNTGY LRDLFIGSEGTLG+ITGAVLKLF QP A Sbjct: 160 MRELTLGLEVVLPDGRIWDGLRSLRKDNTGYALRDLFIGSEGTLGIITGAVLKLFPQPTA 219 Query: 61 RATAWVGCDSLAQLAELLARTRARCGDRLVAFEMMSAASLALVLQHVTDTRAPLAQPARY 120 RATA+V A +LL R+RARCGDRL AFE ++AA+L ++++ + D R P A Sbjct: 220 RATAFVAVADAAAALKLLQRSRARCGDRLTAFEFLTAATLEMIMRQIPDARLPFAAVPEA 279 Query: 121 NALIELADT-EDLGLQSMLEELLGQAMEDALVTDAMLCSNGSQAAALWKIREGISQAQVR 179 LIEL+D E+ L + LE L AM + LV DA++ +G+QA A W++RE +S+A VR Sbjct: 280 AVLIELSDIGEEAALTARLETTLTDAMTEGLVADAVIAQDGTQAKAFWRVRESVSEALVR 339 Query: 180 AGKVIKHDIALPISAIAEFVDQAERAIAACGLQAEIINFGHLGDGNLHFNVMIPLSSSYE 239 GK +KHD+A+P++ IA+FVD + + A + FGHLGDGNLH+N+M PL S Sbjct: 340 EGKALKHDVAVPVAEIADFVDVMDAVVGAALPGIRPMVFGHLGDGNLHYNLMRPLDMSEA 399 Query: 240 EVRQATLLLNRLVHDLVTEKQGSISAEHGVGQLRRDELRHYKSPLEMELMLRIKQAFDPN 299 E + + RLVHD +T ++GSISAEHG+GQLR E+ K PLE+ELM ++K+ DP Sbjct: 400 EFYERGPRITRLVHDEITRRRGSISAEHGIGQLRTAEMPLCKPPLELELMRQLKRTLDPR 459 Query: 300 LIMNPGKLL 308 +MNPGKLL Sbjct: 460 GLMNPGKLL 468 >ref|YP_932531.1| putative glycolate oxidase subunit GlcD [Azoarcus sp. BH72] emb|CAL93644.1| putative glycolate oxidase subunit GlcD [Azoarcus sp. BH72] Length = 468 Score = 312 bits (799), Expect = 5e-83, Method: Composition-based stats. Identities = 164/308 (53%), Positives = 211/308 (68%), Gaps = 1/308 (0%) Query: 2 RELALGLEVVLPDGRIWNGLRGLRKDNTGYDLRDLFIGSEGTLGVITGAVLKLFSQPHAR 61 REL LGLEVVLPDGRIW+G+RGLRKDNTGYDL+ LFIG+EGTLGVIT AVLKLF P Sbjct: 161 RELTLGLEVVLPDGRIWDGMRGLRKDNTGYDLKHLFIGAEGTLGVITAAVLKLFPAPRGF 220 Query: 62 ATAWVGCDSLAQLAELLARTRARCGDRLVAFEMMSAASLALVLQHVTDTRAPLAQPARYN 121 ATAW A LL R R CGDR+ AFE++ +L LVL+H+ R P + P ++ Sbjct: 221 ATAWAAVSDPAAAVRLLGRLRHHCGDRISAFELVGRPALDLVLKHIPGARDPFSAPTQWA 280 Query: 122 ALIELADT-EDLGLQSMLEELLGQAMEDALVTDAMLCSNGSQAAALWKIREGISQAQVRA 180 LIEL+D+ E GL L LG ME LV DA++ S+ QA ALW +RE IS+AQ Sbjct: 281 VLIELSDSLEGEGLAETLAGALGAEMEAGLVLDAVVASSLGQAQALWALRENISEAQRIE 340 Query: 181 GKVIKHDIALPISAIAEFVDQAERAIAACGLQAEIINFGHLGDGNLHFNVMIPLSSSYEE 240 G IKHD+++P+S IAEF+++A+ ++ + I+ FGH+GDGNLH+N+ + Sbjct: 341 GVSIKHDVSVPVSRIAEFLERADVSLKSQWPGVRIVAFGHIGDGNLHYNLSRSETDDNAS 400 Query: 241 VRQATLLLNRLVHDLVTEKQGSISAEHGVGQLRRDELRHYKSPLEMELMLRIKQAFDPNL 300 T +NR+VHDLV GSISAEHG+GQL+R E+R YKS +EM++M IK AFDP+ Sbjct: 401 FIARTEDVNRIVHDLVDALGGSISAEHGLGQLKRAEIRRYKSTVEMDMMEAIKNAFDPSR 460 Query: 301 IMNPGKLL 308 +MNPGK+L Sbjct: 461 LMNPGKVL 468 >ref|YP_001238210.1| putative D-lactate dehydrogenase [Bradyrhizobium sp. BTAi1] gb|ABQ34304.1| putative D-lactate dehydrogenase [Bradyrhizobium sp. BTAi1] Length = 471 Score = 309 bits (791), Expect = 4e-82, Method: Composition-based stats. Identities = 167/309 (54%), Positives = 219/309 (70%), Gaps = 1/309 (0%) Query: 1 MRELALGLEVVLPDGRIWNGLRGLRKDNTGYDLRDLFIGSEGTLGVITGAVLKLFSQPHA 60 MREL LGLEVVLPDGRIW+GLR LRKDNTGY LRDLFIGSEGTLG+ITGAVLKLF+QP A Sbjct: 160 MRELTLGLEVVLPDGRIWDGLRALRKDNTGYALRDLFIGSEGTLGIITGAVLKLFAQPTA 219 Query: 61 RATAWVGCDSLAQLAELLARTRARCGDRLVAFEMMSAASLALVLQHVTDTRAPLAQPARY 120 RATA+V A +LL +R+ CGDRL AFE +++A+L ++L+ + DTR P Sbjct: 220 RATAFVAVADAAAALKLLRLSRSHCGDRLTAFEFLTSATLDMILRQIPDTRLPFDALPSA 279 Query: 121 NALIELADTEDL-GLQSMLEELLGQAMEDALVTDAMLCSNGSQAAALWKIREGISQAQVR 179 LIEL+D D L + LE L AM + L +DA++ +G+QA A W++RE +S+A VR Sbjct: 280 AVLIELSDISDEPTLAARLETTLADAMAEGLASDAVVAQDGTQAKAFWRVRESVSEALVR 339 Query: 180 AGKVIKHDIALPISAIAEFVDQAERAIAACGLQAEIINFGHLGDGNLHFNVMIPLSSSYE 239 GK +KHDIA+P++ IA+FV + A+ A + FGHLGDGNLH+N+M PL+ + + Sbjct: 340 EGKALKHDIAVPVAEIADFVKVMDAAVDAALPGIRPMVFGHLGDGNLHYNLMCPLAMTED 399 Query: 240 EVRQATLLLNRLVHDLVTEKQGSISAEHGVGQLRRDELRHYKSPLEMELMLRIKQAFDPN 299 + RLVHD +T ++GSISAEHG+GQLR E+ K PLE+ELM ++K+ DP+ Sbjct: 400 AFSGHGPRITRLVHDEITRRRGSISAEHGIGQLRMSEMPLCKPPLELELMQQLKRTLDPH 459 Query: 300 LIMNPGKLL 308 +MNPGKLL Sbjct: 460 GLMNPGKLL 468