BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3131.p (349 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775864.1| branched-chain amino acid ABC transporter pe... 649 0.0 ref|YP_001888080.1| extracellular ligand-binding receptor [Burkh... 541 e-152 ref|ZP_06839811.1| Extracellular ligand-binding receptor [Burkho... 541 e-152 ref|YP_554639.1| branched chain amino acid ABC transporter perip... 541 e-152 ref|YP_003608043.1| extracellular ligand-binding receptor [Burkh... 540 e-151 >ref|YP_003775864.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ63956.1| ABC-type branched-chain amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 649 bits (1674), Expect = 0.0, Method: Composition-based stats. Identities = 324/349 (92%), Positives = 342/349 (97%) Query: 1 MALDEVNAAGGVLGKKLEVIARDDNGNPGDSVRVAEELMARERVALLFGGFLSNTGLALT 60 MALDE+NA+GGVLGKKLEVIARDDNGNPGDSVRVAEELMARERVALLFGGFLSNTGLALT Sbjct: 56 MALDEINASGGVLGKKLEVIARDDNGNPGDSVRVAEELMARERVALLFGGFLSNTGLALT 115 Query: 61 DYAKQHKVFFLAAEPLTDKIVWQNGNKYTYRLRPSTYMLVASVVKEAAKLKKKRWAIVYP 120 DYAKQH+VFFLAAEPLTDKIVWQNGNKYTYRLRPST MLVASVVKEA KLKKKRWAIVYP Sbjct: 116 DYAKQHRVFFLAAEPLTDKIVWQNGNKYTYRLRPSTSMLVASVVKEAVKLKKKRWAIVYP 175 Query: 121 NYEYGQSAVASFKTLLKQAQPDVEFVAEQAPPLGKIDAGAVAQALVDAKPDAIFNALFAA 180 NYEYGQSAVASFKTL+KQAQPDVEFVAEQAPPLGKIDAGAV QAL DAKPDAIFNALFAA Sbjct: 176 NYEYGQSAVASFKTLMKQAQPDVEFVAEQAPPLGKIDAGAVTQALADAKPDAIFNALFAA 235 Query: 181 DLGKFVREGNTRGLFDQVEVVSLLTGEPEYLDPLKNEAPQNWIVTGYPWYAINTPEHKKF 240 DLGKFVREGNTRGLF+QV+VVSLLTGEPEYLDPLK EAPQNWIVTGYPWYAI+TPEHKKF Sbjct: 236 DLGKFVREGNTRGLFEQVDVVSLLTGEPEYLDPLKGEAPQNWIVTGYPWYAIHTPEHKKF 295 Query: 241 VDAYRKKFNDYPRNGSLVGYSALMSIAAGIKKAGSTDADKLAAAFSGLKVETPVASIVYR 300 V+AYRKKFNDYPRNGSLVGYSALMSIAAG++KAGSTDAD+LAAAFSGLKVETPVASIVYR Sbjct: 296 VEAYRKKFNDYPRNGSLVGYSALMSIAAGLRKAGSTDADRLAAAFSGLKVETPVASIVYR 355 Query: 301 PQDHQSTLGAFVGRTGIKDGKGIMTSFSYVDGASLQLPDAEVKKLRPAD 349 PQDHQSTLGAFVGRTG+K+G+G+MTSF+Y+DGA+LQLPDAEVKKLR D Sbjct: 356 PQDHQSTLGAFVGRTGLKEGRGVMTSFTYIDGAALQLPDAEVKKLRAPD 404 >ref|YP_001888080.1| extracellular ligand-binding receptor [Burkholderia phytofirmans PsJN] gb|ACD18710.1| Extracellular ligand-binding receptor [Burkholderia phytofirmans PsJN] Length = 402 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 271/349 (77%), Positives = 308/349 (88%) Query: 1 MALDEVNAAGGVLGKKLEVIARDDNGNPGDSVRVAEELMARERVALLFGGFLSNTGLALT 60 +ALD+VNAAGGVLGK+LEV++RDDNGNPGD++RVA+EL+ARE+V LLFGGFLSNTGLALT Sbjct: 54 LALDQVNAAGGVLGKQLEVVSRDDNGNPGDTIRVAQELIAREQVQLLFGGFLSNTGLALT 113 Query: 61 DYAKQHKVFFLAAEPLTDKIVWQNGNKYTYRLRPSTYMLVASVVKEAAKLKKKRWAIVYP 120 D+AKQ K+FFLAAEPLTDKIVW +GNKYTYRLRPSTYM VA +V EAAKL KKRWA+VYP Sbjct: 114 DFAKQKKIFFLAAEPLTDKIVWADGNKYTYRLRPSTYMQVAMLVPEAAKLHKKRWALVYP 173 Query: 121 NYEYGQSAVASFKTLLKQAQPDVEFVAEQAPPLGKIDAGAVAQALVDAKPDAIFNALFAA 180 NYEYGQSAVA+FK LL AQPDV+FVAEQA PLG +DAGAV QA+ DAKPDAIFN LF A Sbjct: 174 NYEYGQSAVATFKKLLTAAQPDVQFVAEQATPLGNVDAGAVTQAIADAKPDAIFNVLFGA 233 Query: 181 DLGKFVREGNTRGLFDQVEVVSLLTGEPEYLDPLKNEAPQNWIVTGYPWYAINTPEHKKF 240 DLGKFVREGNTRGLF VVSLLTGEP+YLDPL EAP WIVTGYPWY+I+T +KKF Sbjct: 234 DLGKFVREGNTRGLFKDRSVVSLLTGEPDYLDPLGAEAPTGWIVTGYPWYSIDTAANKKF 293 Query: 241 VDAYRKKFNDYPRNGSLVGYSALMSIAAGIKKAGSTDADKLAAAFSGLKVETPVASIVYR 300 VDAY+ K++DYPR GS+VGYSALMSIAAGIKKAGS D DKLAAAF GL V+TP I YR Sbjct: 294 VDAYQAKYHDYPRLGSVVGYSALMSIAAGIKKAGSVDPDKLAAAFKGLGVDTPFGPITYR 353 Query: 301 PQDHQSTLGAFVGRTGIKDGKGIMTSFSYVDGASLQLPDAEVKKLRPAD 349 QD+QST+GA+VG TG+KDGKG+MTS+ Y+DGAS+Q DAEVKKLRPA+ Sbjct: 354 AQDNQSTMGAYVGVTGLKDGKGVMTSYRYIDGASVQPSDAEVKKLRPAE 402 >ref|ZP_06839811.1| Extracellular ligand-binding receptor [Burkholderia sp. Ch1-1] gb|EFG72641.1| Extracellular ligand-binding receptor [Burkholderia sp. Ch1-1] Length = 402 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 271/349 (77%), Positives = 307/349 (87%) Query: 1 MALDEVNAAGGVLGKKLEVIARDDNGNPGDSVRVAEELMARERVALLFGGFLSNTGLALT 60 +ALD+VNAAGGVLGK LEV++RDDNGNPGD++RVA+EL+ARE+V LLFGGFLSNTGLAL Sbjct: 54 LALDQVNAAGGVLGKPLEVVSRDDNGNPGDTIRVAQELIAREQVQLLFGGFLSNTGLALA 113 Query: 61 DYAKQHKVFFLAAEPLTDKIVWQNGNKYTYRLRPSTYMLVASVVKEAAKLKKKRWAIVYP 120 D+AKQ K+FFLAAEPLTDKIVW +GNKYTYRLRPSTYM VA +V EA KLKKKRWA+VYP Sbjct: 114 DFAKQKKIFFLAAEPLTDKIVWADGNKYTYRLRPSTYMQVAMLVPEAVKLKKKRWALVYP 173 Query: 121 NYEYGQSAVASFKTLLKQAQPDVEFVAEQAPPLGKIDAGAVAQALVDAKPDAIFNALFAA 180 NYEYGQSAVA+FK LL AQPDV+FVAEQA PLG +DAGAV QA+ DAKPDAIFN LF A Sbjct: 174 NYEYGQSAVATFKKLLTAAQPDVQFVAEQATPLGNVDAGAVTQAIADAKPDAIFNVLFGA 233 Query: 181 DLGKFVREGNTRGLFDQVEVVSLLTGEPEYLDPLKNEAPQNWIVTGYPWYAINTPEHKKF 240 DLGKFVREGNTRGLF VVSLLTGEP+YLDPL EAP WIVTGYPWY+I+TP +KKF Sbjct: 234 DLGKFVREGNTRGLFKDRSVVSLLTGEPDYLDPLGAEAPTGWIVTGYPWYSIDTPANKKF 293 Query: 241 VDAYRKKFNDYPRNGSLVGYSALMSIAAGIKKAGSTDADKLAAAFSGLKVETPVASIVYR 300 VDAY+ K++DYPR GS+VGYSALMSIAAGIKKAGS D DKLAAAF GL VETP I YR Sbjct: 294 VDAYQAKYHDYPRLGSVVGYSALMSIAAGIKKAGSVDPDKLAAAFKGLGVETPFGPITYR 353 Query: 301 PQDHQSTLGAFVGRTGIKDGKGIMTSFSYVDGASLQLPDAEVKKLRPAD 349 QD+QST+GA+VG TG+KDGKG+MTS+ Y+DGAS+Q DAEV+KLRPA+ Sbjct: 354 AQDNQSTMGAYVGVTGVKDGKGVMTSYRYIDGASVQPSDAEVRKLRPAE 402 >ref|YP_554639.1| branched chain amino acid ABC transporter periplasmic ligand-binding protein [Burkholderia xenovorans LB400] gb|ABE35289.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Burkholderia xenovorans LB400] Length = 402 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 268/349 (76%), Positives = 308/349 (88%) Query: 1 MALDEVNAAGGVLGKKLEVIARDDNGNPGDSVRVAEELMARERVALLFGGFLSNTGLALT 60 +ALD+VNAAGGVLGK+LEV++RDDNGNPGD++RVA+EL+ARE+V LLFGGFLSNTGLAL Sbjct: 54 LALDQVNAAGGVLGKQLEVVSRDDNGNPGDTIRVAQELIAREQVQLLFGGFLSNTGLALA 113 Query: 61 DYAKQHKVFFLAAEPLTDKIVWQNGNKYTYRLRPSTYMLVASVVKEAAKLKKKRWAIVYP 120 D+AKQ ++FFLAAEPLTDKIVW +GNKYTYRLRPSTYM VA +V EA KLKKKRWA+VYP Sbjct: 114 DFAKQKRIFFLAAEPLTDKIVWADGNKYTYRLRPSTYMQVAMLVPEAVKLKKKRWALVYP 173 Query: 121 NYEYGQSAVASFKTLLKQAQPDVEFVAEQAPPLGKIDAGAVAQALVDAKPDAIFNALFAA 180 NYEYGQSAVA+FK LL AQPDV+FVAEQA PLG +DAGAV QA+ DAKPDAIFN LF A Sbjct: 174 NYEYGQSAVATFKKLLTAAQPDVQFVAEQATPLGNVDAGAVTQAIADAKPDAIFNVLFGA 233 Query: 181 DLGKFVREGNTRGLFDQVEVVSLLTGEPEYLDPLKNEAPQNWIVTGYPWYAINTPEHKKF 240 DLGKFVREGNTRGLF VVSLLTGEP+YLDPL EAP WIVTGYPWY+I+TP +KKF Sbjct: 234 DLGKFVREGNTRGLFKDRSVVSLLTGEPDYLDPLGAEAPTGWIVTGYPWYSIDTPANKKF 293 Query: 241 VDAYRKKFNDYPRNGSLVGYSALMSIAAGIKKAGSTDADKLAAAFSGLKVETPVASIVYR 300 VDAY+ K++DYPR GS+VGYSALMS+AAGI+KAGS D DKLAAAF GL VETP I YR Sbjct: 294 VDAYQAKYHDYPRLGSVVGYSALMSLAAGIRKAGSVDPDKLAAAFKGLGVETPFGPITYR 353 Query: 301 PQDHQSTLGAFVGRTGIKDGKGIMTSFSYVDGASLQLPDAEVKKLRPAD 349 QD+QST+GA+VG TG+KDGKG+MTS+ Y+DGAS+Q DAEV+KLRPA+ Sbjct: 354 AQDNQSTMGAYVGVTGVKDGKGVMTSYRYIDGASVQPSDAEVRKLRPAE 402 >ref|YP_003608043.1| extracellular ligand-binding receptor [Burkholderia sp. CCGE1002] gb|ADG18532.1| Extracellular ligand-binding receptor [Burkholderia sp. CCGE1002] Length = 402 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 272/349 (77%), Positives = 307/349 (87%) Query: 1 MALDEVNAAGGVLGKKLEVIARDDNGNPGDSVRVAEELMARERVALLFGGFLSNTGLALT 60 +AL++VNAAGGVLGK+LEVI+RDD GNPGD+VRVA+EL+ARE+V LLFGGFLSNTGLAL Sbjct: 54 LALEQVNAAGGVLGKQLEVISRDDGGNPGDTVRVAQELIAREQVQLLFGGFLSNTGLALA 113 Query: 61 DYAKQHKVFFLAAEPLTDKIVWQNGNKYTYRLRPSTYMLVASVVKEAAKLKKKRWAIVYP 120 D+AKQ K+FFLAAEPLTDKIVW +GNKYTYRLRPSTYM VA +V EAAKLKKKRWAIVYP Sbjct: 114 DFAKQKKIFFLAAEPLTDKIVWADGNKYTYRLRPSTYMQVAMLVPEAAKLKKKRWAIVYP 173 Query: 121 NYEYGQSAVASFKTLLKQAQPDVEFVAEQAPPLGKIDAGAVAQALVDAKPDAIFNALFAA 180 NYEYGQSAVA+FK LL AQPDV+FV EQA PLG +DAGAV QA+ DAKPDAIFN LFAA Sbjct: 174 NYEYGQSAVATFKKLLTAAQPDVQFVVEQATPLGNVDAGAVTQAIADAKPDAIFNVLFAA 233 Query: 181 DLGKFVREGNTRGLFDQVEVVSLLTGEPEYLDPLKNEAPQNWIVTGYPWYAINTPEHKKF 240 DLGKFVREGNTRGLF VVSLLTGEP+YLDPL EAP WIVTGYPWY+I+T +K+F Sbjct: 234 DLGKFVREGNTRGLFKDRAVVSLLTGEPDYLDPLGAEAPTGWIVTGYPWYSIDTAANKQF 293 Query: 241 VDAYRKKFNDYPRNGSLVGYSALMSIAAGIKKAGSTDADKLAAAFSGLKVETPVASIVYR 300 VDAY+ +++DYPR GS+VGYSALMSIA GIKKAGSTD DKLAAAF GL V+TP I YR Sbjct: 294 VDAYKARYHDYPRVGSVVGYSALMSIADGIKKAGSTDPDKLAAAFKGLNVQTPFGPITYR 353 Query: 301 PQDHQSTLGAFVGRTGIKDGKGIMTSFSYVDGASLQLPDAEVKKLRPAD 349 QD+QST+GA+VG TG+KDGKG+MTS+ YVDGAS+Q DAEVKKLRPAD Sbjct: 354 AQDNQSTMGAYVGVTGVKDGKGVMTSYRYVDGASVQPSDAEVKKLRPAD 402