BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3130.p (180 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775865.1| two component response regulator protein [He... 312 1e-83 ref|YP_001354324.1| two-component response regulator [Janthinoba... 286 6e-76 ref|YP_004752852.1| putative Two-component response regulator [C... 284 4e-75 ref|YP_001100939.1| putative two-component response regulator [H... 271 2e-71 ref|YP_001020933.1| two-component response regulator [Methylibiu... 268 2e-70 >ref|YP_003775865.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63957.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 178 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 167/178 (93%), Positives = 172/178 (96%) Query: 3 MPADRLLLIIEDDAAFARTLGRSFERRGYTVLLAASQEEAAAHLKEHSPGYAVVDLKLGG 62 MPADRLLLIIEDDAAFARTLGRSFERRGYTVLLAASQEEAA HL++H PGYAVVDLKLGG Sbjct: 1 MPADRLLLIIEDDAAFARTLGRSFERRGYTVLLAASQEEAAQHLQQHRPGYAVVDLKLGG 60 Query: 63 NASGLACVQMLHAHDEAMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGQV 122 NASGLACVQMLHAHDE MLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFG V Sbjct: 61 NASGLACVQMLHAHDEDMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGHV 120 Query: 123 AGNTEVELTARSTSIKTLEWERIHEVLVETDFNISETARRLGMHRRTLARKLEKQRVK 180 AG +EVEL AR+TSIKTLEWERIHEVLV+TDFNISETARRLGMHRRTLARKLEKQRVK Sbjct: 121 AGVSEVELPARATSIKTLEWERIHEVLVDTDFNISETARRLGMHRRTLARKLEKQRVK 178 >ref|YP_001354324.1| two-component response regulator [Janthinobacterium sp. Marseille] gb|ABR89253.1| two-component response regulator [Janthinobacterium sp. Marseille] Length = 179 Score = 286 bits (733), Expect = 6e-76, Method: Composition-based stats. Identities = 155/179 (86%), Positives = 164/179 (91%), Gaps = 1/179 (0%) Query: 3 MPAD-RLLLIIEDDAAFARTLGRSFERRGYTVLLAASQEEAAAHLKEHSPGYAVVDLKLG 61 M AD RLLLIIEDDAAFARTLGRSFERRGYTVLLAA+ E A+A L+EH+PGYAVVDLKL Sbjct: 1 MSADNRLLLIIEDDAAFARTLGRSFERRGYTVLLAANLEAASALLREHNPGYAVVDLKLE 60 Query: 62 GNASGLACVQMLHAHDEAMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGQ 121 GN SGLACVQMLH HD AMLIVVLTGFAS+ TAVEAIKLGACQYLAKPSNTDDIEAAFG Sbjct: 61 GNTSGLACVQMLHKHDPAMLIVVLTGFASLNTAVEAIKLGACQYLAKPSNTDDIEAAFGH 120 Query: 122 VAGNTEVELTARSTSIKTLEWERIHEVLVETDFNISETARRLGMHRRTLARKLEKQRVK 180 VAG E+E++ RSTSIKTLEWERIHEVLVETDFNISE ARRLGMHRRTLARKLEKQR+K Sbjct: 121 VAGVVEIEVSNRSTSIKTLEWERIHEVLVETDFNISEAARRLGMHRRTLARKLEKQRIK 179 >ref|YP_004752852.1| putative Two-component response regulator [Collimonas fungivorans Ter331] gb|AEK62029.1| putative Two-component response regulator [Collimonas fungivorans Ter331] Length = 184 Score = 284 bits (726), Expect = 4e-75, Method: Composition-based stats. Identities = 152/178 (85%), Positives = 160/178 (89%) Query: 3 MPADRLLLIIEDDAAFARTLGRSFERRGYTVLLAASQEEAAAHLKEHSPGYAVVDLKLGG 62 M DRLLLIIEDDA FARTLGRSFERR YTVLLA++ EAAA L++HSPGYAVVDLKL Sbjct: 7 MATDRLLLIIEDDATFARTLGRSFERRDYTVLLASNLGEAAALLRQHSPGYAVVDLKLND 66 Query: 63 NASGLACVQMLHAHDEAMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGQV 122 + SGLACVQMLH HD AMLIVVLTGFASI TAVEAIKLGACQYLAKPSNTDDIEAAFG V Sbjct: 67 STSGLACVQMLHKHDPAMLIVVLTGFASINTAVEAIKLGACQYLAKPSNTDDIEAAFGHV 126 Query: 123 AGNTEVELTARSTSIKTLEWERIHEVLVETDFNISETARRLGMHRRTLARKLEKQRVK 180 AG E+EL+ RSTSIKTLEWERIHEVLVET FNISETARRLGMHRRTLARKLEKQR+K Sbjct: 127 AGAAEIELSNRSTSIKTLEWERIHEVLVETGFNISETARRLGMHRRTLARKLEKQRIK 184 >ref|YP_001100939.1| putative two-component response regulator [Herminiimonas arsenicoxydans] emb|CAL62818.1| Putative two-component response regulator [Herminiimonas arsenicoxydans] Length = 178 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 145/178 (81%), Positives = 154/178 (86%) Query: 3 MPADRLLLIIEDDAAFARTLGRSFERRGYTVLLAASQEEAAAHLKEHSPGYAVVDLKLGG 62 M +R LLIIEDD AFARTLGRSFERR Y VLLA+SQ+EAAA L++ P YAVVDLKL G Sbjct: 1 MSVERTLLIIEDDGAFARTLGRSFERRNYRVLLASSQDEAAALLQQEKPAYAVVDLKLNG 60 Query: 63 NASGLACVQMLHAHDEAMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGQV 122 + SGLACVQMLH HD AM IVVLTGFAS+ TAVEAIKLGACQYLAKPSNTDDIEAAFG V Sbjct: 61 HTSGLACVQMLHKHDPAMQIVVLTGFASLNTAVEAIKLGACQYLAKPSNTDDIEAAFGHV 120 Query: 123 AGNTEVELTARSTSIKTLEWERIHEVLVETDFNISETARRLGMHRRTLARKLEKQRVK 180 AGN +VEL RSTSIKTLEWE IH VL E+DFNISE ARRLGMHRRTLARKLEKQRVK Sbjct: 121 AGNVDVELGNRSTSIKTLEWEHIHAVLAESDFNISEAARRLGMHRRTLARKLEKQRVK 178 >ref|YP_001020933.1| two-component response regulator [Methylibium petroleiphilum PM1] gb|ABM94698.1| two-component response regulator [Methylibium petroleiphilum PM1] Length = 178 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 144/178 (80%), Positives = 157/178 (88%) Query: 3 MPADRLLLIIEDDAAFARTLGRSFERRGYTVLLAASQEEAAAHLKEHSPGYAVVDLKLGG 62 M +RLLLI+EDDA+FARTLGRSFERRGYTVLLAA+ E+ AA L+E +PGYAVVDLKL G Sbjct: 1 MDVERLLLIVEDDASFARTLGRSFERRGYTVLLAANLEQVAALLRERTPGYAVVDLKLAG 60 Query: 63 NASGLACVQMLHAHDEAMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGQV 122 SGLACV+ LHAHD MLIVVLTG+ASI TAVEAIKLGAC YLAKPSNTDDIEAAFG+ Sbjct: 61 GGSGLACVRTLHAHDPEMLIVVLTGYASIATAVEAIKLGACHYLAKPSNTDDIEAAFGRA 120 Query: 123 AGNTEVELTARSTSIKTLEWERIHEVLVETDFNISETARRLGMHRRTLARKLEKQRVK 180 GN EV+LT R++SIKTLEWERIHE L ET FNISETARRLGMHRRTLARKLEKQRVK Sbjct: 121 EGNAEVDLTQRASSIKTLEWERIHETLAETGFNISETARRLGMHRRTLARKLEKQRVK 178