BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3129.p (428 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775866.1| two component sensor histidine kinase [Herba... 766 0.0 ref|YP_004752853.1| putative Two-component sensor [Collimonas fu... 609 e-172 ref|YP_001354325.1| two-component sensor histidine kinase [Janth... 565 e-159 ref|YP_001100940.1| putative two-component sensor [Herminiimonas... 529 e-148 ref|YP_004156990.1| integral membrane sensor signal transduction... 524 e-146 >ref|YP_003775866.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ63958.1| two component sensor histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 460 Score = 766 bits (1977), Expect = 0.0, Method: Composition-based stats. Identities = 394/428 (92%), Positives = 407/428 (95%) Query: 1 MLLLIQLRWLAVLGQVSTIAFVVLVFDLHLPLPHMLEVLSCLIAFNIASHLRWHERRIAT 60 MLLLIQLRWLAVLGQVSTIAFVVLVFDLHLPLPHMLEVLSCL+AFNIASHLRWHERRIAT Sbjct: 33 MLLLIQLRWLAVLGQVSTIAFVVLVFDLHLPLPHMLEVLSCLVAFNIASHLRWHERRIAT 92 Query: 61 NAELFLALLVDVAVLTFQLYLSGGITNPFAFLYLMQIILSAVLLKPWSSWAIVAVTMACL 120 NAELFLALLVDVAVLTFQLYLSGGITNPFAFLYLMQIILSAVLLKPWSSWAIV VTM CL Sbjct: 93 NAELFLALLVDVAVLTFQLYLSGGITNPFAFLYLMQIILSAVLLKPWSSWAIVGVTMLCL 152 Query: 121 AGLALFSEPLALPPDHNAGLLSLYVEGTLICFLLNAGLMVFFITRISSNLRAGDALLADL 180 AGLALFSEPLALPPDHNAGLLSLYVEGTLICFLLNAGLMVFFITRISSNLRAGDALLADL Sbjct: 153 AGLALFSEPLALPPDHNAGLLSLYVEGTLICFLLNAGLMVFFITRISSNLRAGDALLADL 212 Query: 181 RQRAAEEDHIVRMGLLASGAAHELGTPLATVSVILGDWKRMPEISQRADMLEDIAEMEAQ 240 RQRAAEEDHIVRMGLLASGAAHELGTPLATVSVILGDWKRMPEISQR DML+DIAEMEAQ Sbjct: 213 RQRAAEEDHIVRMGLLASGAAHELGTPLATVSVILGDWKRMPEISQRQDMLDDIAEMEAQ 272 Query: 241 LQRCKSIVSGVLLSAGEARGESSIKTTINTFLDSVAEDWRKTRPVEIFEYRNLIGQDVPV 300 LQRCKSIVSGVLLSAG+ARGESSIKTT+NTFLDSVAEDWRK+RPV +F+Y+NLIGQD+PV Sbjct: 273 LQRCKSIVSGVLLSAGQARGESSIKTTLNTFLDSVAEDWRKSRPVAVFDYQNLIGQDLPV 332 Query: 301 AFDSAIKQMLGNVLDNAFEVSPQWLALEVRREGDLLLMEVSDRGPGFPDWMINQIGKPYQ 360 AFDSAIKQMLGNVLDNAFEVSP WL+LEVRREG LLLMEVSD+GPGFP+WMINQIGKPYQ Sbjct: 333 AFDSAIKQMLGNVLDNAFEVSPHWLSLEVRREGGLLLMEVSDQGPGFPEWMINQIGKPYQ 392 Query: 361 STKGKPGRGLGLFFVVNVARKLGGRVWASNRAAGGARVTLELPLSAISLAPLTESAPGSE 420 STKGKPGRGLGLFFVVNVARKLGGRVWASN GARVTLELPLSAISL E GS Sbjct: 393 STKGKPGRGLGLFFVVNVARKLGGRVWASNLPGAGARVTLELPLSAISLEADAEPVVGSA 452 Query: 421 LPDYPMGA 428 P +P GA Sbjct: 453 TPAFPSGA 460 >ref|YP_004752853.1| putative Two-component sensor [Collimonas fungivorans Ter331] gb|AEK62030.1| putative Two-component sensor [Collimonas fungivorans Ter331] Length = 459 Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 304/409 (74%), Positives = 354/409 (86%) Query: 1 MLLLIQLRWLAVLGQVSTIAFVVLVFDLHLPLPHMLEVLSCLIAFNIASHLRWHERRIAT 60 ML LIQLRW+AV+GQ++TIAFV+ F +HLPLPHML+VL+CL+AFNIASHLRWHERR+A+ Sbjct: 43 MLQLIQLRWIAVIGQITTIAFVIAGFGIHLPLPHMLKVLACLVAFNIASHLRWHERRVAS 102 Query: 61 NAELFLALLVDVAVLTFQLYLSGGITNPFAFLYLMQIILSAVLLKPWSSWAIVAVTMACL 120 N ELFLALLVDV +LT QLY SGGITNPFAFL+L+Q+ILSAVLL+ WS+W IVAVT ACL Sbjct: 103 NGELFLALLVDVGILTAQLYFSGGITNPFAFLFLLQVILSAVLLETWSTWTIVAVTSACL 162 Query: 121 AGLALFSEPLALPPDHNAGLLSLYVEGTLICFLLNAGLMVFFITRISSNLRAGDALLADL 180 AGL+LFSEPLALPPDH GL SLYVEG LICF+LNA L+VFFITRI NLRAG A LADL Sbjct: 163 AGLSLFSEPLALPPDHGNGLSSLYVEGLLICFVLNAALLVFFITRIGRNLRAGAAQLADL 222 Query: 181 RQRAAEEDHIVRMGLLASGAAHELGTPLATVSVILGDWKRMPEISQRADMLEDIAEMEAQ 240 RQRAAEEDHIVRMGLLASGAAHELGTPLAT+SVILGDW+RMPE S+ +++LE+I+EM+AQ Sbjct: 223 RQRAAEEDHIVRMGLLASGAAHELGTPLATLSVILGDWRRMPEFSKNSELLEEISEMQAQ 282 Query: 241 LQRCKSIVSGVLLSAGEARGESSIKTTINTFLDSVAEDWRKTRPVEIFEYRNLIGQDVPV 300 LQRCKSIVSG+LLSAGEARGESS+KTTI+TFL+ +A++W TRP+ F Y N I QD+PV Sbjct: 283 LQRCKSIVSGILLSAGEARGESSVKTTISTFLNDLAKEWCATRPIVSFAYENRIEQDMPV 342 Query: 301 AFDSAIKQMLGNVLDNAFEVSPQWLALEVRREGDLLLMEVSDRGPGFPDWMINQIGKPYQ 360 AFDSA+KQM+ NVLDNA E SPQW++LE RE D L + V+D GPGF M+ +GKPYQ Sbjct: 343 AFDSALKQMICNVLDNALEASPQWVSLEATREADALTLVVTDSGPGFAPAMLAHLGKPYQ 402 Query: 361 STKGKPGRGLGLFFVVNVARKLGGRVWASNRAAGGARVTLELPLSAISL 409 S+KG+PG GLGLFFVVNVARKLGG V A NR GGA V L LPL++ISL Sbjct: 403 SSKGRPGSGLGLFFVVNVARKLGGAVTARNREQGGALVQLTLPLASISL 451 >ref|YP_001354325.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] gb|ABR91264.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 448 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 282/409 (68%), Positives = 335/409 (81%) Query: 1 MLLLIQLRWLAVLGQVSTIAFVVLVFDLHLPLPHMLEVLSCLIAFNIASHLRWHERRIAT 60 M LIQLRW+AV+GQ++TIA V L F + LP+ HMLEVL CL+AFNIASHLRWHER + Sbjct: 32 MQQLIQLRWIAVVGQITTIAVVTLGFGIELPVRHMLEVLVCLVAFNIASHLRWHERPSVS 91 Query: 61 NAELFLALLVDVAVLTFQLYLSGGITNPFAFLYLMQIILSAVLLKPWSSWAIVAVTMACL 120 N+ELFLALLVDV +LT QLYLSGG TNPF FLYL+Q+ILSAVLL+ WS+W IVA+T ACL Sbjct: 92 NSELFLALLVDVGILTAQLYLSGGTTNPFIFLYLLQVILSAVLLEAWSTWIIVAITSACL 151 Query: 121 AGLALFSEPLALPPDHNAGLLSLYVEGTLICFLLNAGLMVFFITRISSNLRAGDALLADL 180 L++ S PL LP DH S+YV+G LICF LNA L+ FFITRI+ NLRAGDA LADL Sbjct: 152 VALSILSSPLTLPYDHEYRFFSMYVQGMLICFALNAILLAFFITRINRNLRAGDAQLADL 211 Query: 181 RQRAAEEDHIVRMGLLASGAAHELGTPLATVSVILGDWKRMPEISQRADMLEDIAEMEAQ 240 R+RAAEE++IVRMGLLASGAAHELGTPLAT+SVILGDW+RMPE S ++ ++I EME Q Sbjct: 212 RKRAAEEENIVRMGLLASGAAHELGTPLATLSVILGDWRRMPEFSNNPELQDEIIEMETQ 271 Query: 241 LQRCKSIVSGVLLSAGEARGESSIKTTINTFLDSVAEDWRKTRPVEIFEYRNLIGQDVPV 300 L+RCK+IVS +LLSAGEARGESS+KTT++TFL+ +AE+WR +R + FEY+N I QD+PV Sbjct: 272 LKRCKAIVSSILLSAGEARGESSVKTTLSTFLNDLAEEWRHSRAITSFEYKNRIEQDIPV 331 Query: 301 AFDSAIKQMLGNVLDNAFEVSPQWLALEVRREGDLLLMEVSDRGPGFPDWMINQIGKPYQ 360 FDS +KQM+ NVLDNA E SP WL+LEV R+ DLL + ++D GPGF M++QIGKPYQ Sbjct: 332 VFDSVLKQMICNVLDNAVEASPHWLSLEVSRKEDLLTLLITDAGPGFAPGMLSQIGKPYQ 391 Query: 361 STKGKPGRGLGLFFVVNVARKLGGRVWASNRAAGGARVTLELPLSAISL 409 STKG+PG GLGLF VVNVARKLGG V A NRA GGA V L LPLSAISL Sbjct: 392 STKGRPGSGLGLFLVVNVARKLGGTVAARNRAEGGAAVELTLPLSAISL 440 >ref|YP_001100940.1| putative two-component sensor [Herminiimonas arsenicoxydans] emb|CAL62819.1| Putative two-component sensor histidine kinase [Herminiimonas arsenicoxydans] Length = 449 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 275/407 (67%), Positives = 317/407 (77%) Query: 1 MLLLIQLRWLAVLGQVSTIAFVVLVFDLHLPLPHMLEVLSCLIAFNIASHLRWHERRIAT 60 M+LLIQLRW+AV+GQ++TIA V L F + L LP+MLEVL+CLIAFNIASHLRWHER + + Sbjct: 33 MMLLIQLRWIAVIGQITTIAIVTLGFGIQLQLPYMLEVLACLIAFNIASHLRWHERSMVS 92 Query: 61 NAELFLALLVDVAVLTFQLYLSGGITNPFAFLYLMQIILSAVLLKPWSSWAIVAVTMACL 120 N ELF ALLVDVA LT QLY SGGITNPFAF YL+Q+ILSAVLL+ WS+W IVAVT ACL Sbjct: 93 NNELFFALLVDVASLTLQLYFSGGITNPFAFAYLLQVILSAVLLEAWSTWIIVAVTSACL 152 Query: 121 AGLALFSEPLALPPDHNAGLLSLYVEGTLICFLLNAGLMVFFITRISSNLRAGDALLADL 180 AGLA + PL LP DH+ SLYV+G LICF+LNA L+ FITRI N AGD LA L Sbjct: 153 AGLAAHANPLILPHDHSLRFFSLYVQGILICFVLNAVLLTAFITRIRRNFHAGDVELAAL 212 Query: 181 RQRAAEEDHIVRMGLLASGAAHELGTPLATVSVILGDWKRMPEISQRADMLEDIAEMEAQ 240 RQRA EE+HIVRMGLLASGAAHELGTPLATVSVILGDW+RMP ++ AD+ +DIAEMEAQ Sbjct: 213 RQRAVEEEHIVRMGLLASGAAHELGTPLATVSVILGDWRRMPVVAASADLQQDIAEMEAQ 272 Query: 241 LQRCKSIVSGVLLSAGEARGESSIKTTINTFLDSVAEDWRKTRPVEIFEYRNLIGQDVPV 300 LQRCKSIVSG+LLSAGE RGESS +TTI TFLD +A WR +RP+ IF Y N I D+ V Sbjct: 273 LQRCKSIVSGILLSAGETRGESSAQTTIVTFLDDLAAAWRASRPIAIFLYENRIEHDLAV 332 Query: 301 AFDSAIKQMLGNVLDNAFEVSPQWLALEVRREGDLLLMEVSDRGPGFPDWMINQIGKPYQ 360 FDS +KQ + N+LDNA E SPQWL L D L++EVSD GPGF ++ +G PYQ Sbjct: 333 VFDSTLKQTIFNLLDNALEASPQWLRLTASSNEDTLIIEVSDAGPGFLPEILANLGTPYQ 392 Query: 361 STKGKPGRGLGLFFVVNVARKLGGRVWASNRAAGGARVTLELPLSAI 407 STK + G GLGLF V+NVAR LGG V A NR GGA V L LPL+AI Sbjct: 393 STKNRVGGGLGLFLVMNVARTLGGTVTARNREEGGAVVQLSLPLAAI 439 >ref|YP_004156990.1| integral membrane sensor signal transduction histidine kinase [Variovorax paradoxus EPS] gb|ADU38879.1| integral membrane sensor signal transduction histidine kinase [Variovorax paradoxus EPS] Length = 460 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 269/409 (65%), Positives = 319/409 (77%) Query: 1 MLLLIQLRWLAVLGQVSTIAFVVLVFDLHLPLPHMLEVLSCLIAFNIASHLRWHERRIAT 60 M LIQLRW AV+GQV+TI V F + LPL +ML+VL+CL FN+ S LR R T Sbjct: 31 MQQLIQLRWFAVVGQVATILVVHYGFGIRLPLDNMLQVLTCLALFNMVSLLRSRTHRRVT 90 Query: 61 NAELFLALLVDVAVLTFQLYLSGGITNPFAFLYLMQIILSAVLLKPWSSWAIVAVTMACL 120 N ELFLALLVDVA LT QLYLSGG TNPF FLYL+Q+IL AVLLK WS+W IV +T C Sbjct: 91 NGELFLALLVDVATLTAQLYLSGGATNPFVFLYLLQVILGAVLLKAWSTWTIVVITSLCF 150 Query: 121 AGLALFSEPLALPPDHNAGLLSLYVEGTLICFLLNAGLMVFFITRISSNLRAGDALLADL 180 AGLALFS PLALP DH+ GL S Y++G L+CF LNA L+V FITRIS NLRA DA LADL Sbjct: 151 AGLALFSRPLALPLDHDRGLWSPYIQGMLVCFALNAALLVIFITRISRNLRARDARLADL 210 Query: 181 RQRAAEEDHIVRMGLLASGAAHELGTPLATVSVILGDWKRMPEISQRADMLEDIAEMEAQ 240 RQRA+EE+HIVRMGLLASGAAHELGTPLAT++VILGDW+R+P S ++L ++AEME Q Sbjct: 211 RQRASEEEHIVRMGLLASGAAHELGTPLATLAVILGDWRRLPHFSSDPELLTEVAEMELQ 270 Query: 241 LQRCKSIVSGVLLSAGEARGESSIKTTINTFLDSVAEDWRKTRPVEIFEYRNLIGQDVPV 300 +QRCKSIVSG+LLSAGEARGESS +TT++TFLD++ E+WR TRPVE F+Y N GQD+P+ Sbjct: 271 IQRCKSIVSGILLSAGEARGESSEETTVSTFLDNLVEEWRTTRPVEEFDYDNRFGQDLPM 330 Query: 301 AFDSAIKQMLGNVLDNAFEVSPQWLALEVRREGDLLLMEVSDRGPGFPDWMINQIGKPYQ 360 DSA+KQM+ NVLDNA E SP WL LE + D L + V+D GPGF ++ + GKPYQ Sbjct: 331 VSDSALKQMICNVLDNALEASPHWLRLEATHDADNLTITVTDAGPGFLPAILKEFGKPYQ 390 Query: 361 STKGKPGRGLGLFFVVNVARKLGGRVWASNRAAGGARVTLELPLSAISL 409 S+KG+PG GLGLF V NVAR LGGRV A NR GGA VT+ LPL+A+ L Sbjct: 391 SSKGRPGGGLGLFLVANVARTLGGRVAARNRPEGGAIVTVTLPLAAVVL 439