BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3128.p (283 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775867.1| surfeit 1 protein [Herbaspirillum seropedica... 383 e-104 ref|YP_004752854.1| cytochrome oxidase biogenesis protein Surf1,... 273 2e-71 ref|YP_001100941.1| SURF1 family protein [Herminiimonas arsenico... 254 9e-66 ref|YP_001354326.1| SurF1 family protein [Janthinobacterium sp. ... 251 8e-65 ref|YP_001372090.1| Surfeit locus 1 family protein [Ochrobactrum... 231 1e-58 >ref|YP_003775867.1| surfeit 1 protein [Herbaspirillum seropedicae SmR1] gb|ADJ63959.1| surfeit 1 protein [Herbaspirillum seropedicae SmR1] Length = 285 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 237/282 (84%), Positives = 257/282 (91%), Gaps = 2/282 (0%) Query: 1 MSPTPTDGVTQGKESGVAQAAPVSRTKASLLLLTLLAGFFFLVFAALGTWQVYRLQWKLD 60 MS TP +GV QGKESG AQA PVSRTKASLLLLTLLAGFFFLVFAALG+WQVYRLQWKLD Sbjct: 1 MSQTPINGVKQGKESGAAQAVPVSRTKASLLLLTLLAGFFFLVFAALGSWQVYRLQWKLD 60 Query: 61 LIAKVDARVHAAPVAPPAAQDWPNVTAERDEYKRVALSGRYLYSKTVAVQASTDLGSGAW 120 LIAKVDARVHAAPVAPP WP V+A+RDEYKRV L+GRYLYSKTVAVQASTDLGSGAW Sbjct: 61 LIAKVDARVHAAPVAPPGPALWPQVSAQRDEYKRVVLTGRYLYSKTVAVQASTDLGSGAW 120 Query: 121 LLTPLQMADGSVVLINRGFVPVSPLKLADSQLADAPAGQLNEVTGLLRMSEQGGGFLRSN 180 LLTPLQ+ADG VVL+NRGFV VSPLKLA++ LADAPAGQ EVTGLLRMSE GGFLRSN Sbjct: 121 LLTPLQLADGEVVLVNRGFVGVSPLKLAEASLADAPAGQNAEVTGLLRMSEPKGGFLRSN 180 Query: 181 DAAQNRWYSRDVKVIAQARNLPAGQVAPYFVDADKASSEANAASAPDAQKPVGGLTVIAF 240 DAAQ+RWYSRDV+ IAQA+ L + VAPYFVDADKAS+EANAA APDAQKPVGGLTVIAF Sbjct: 181 DAAQSRWYSRDVQAIAQAKGLTS--VAPYFVDADKASAEANAAVAPDAQKPVGGLTVIAF 238 Query: 241 HNSHLVYALTWYALALMSLGAGYWVIRDERRWRQRIQDAQAK 282 HNSHL+YALTWYALALMSLGAGYW+IRDERRWR+RI+ AQ++ Sbjct: 239 HNSHLIYALTWYALALMSLGAGYWLIRDERRWRERIRQAQSQ 280 >ref|YP_004752854.1| cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion [Collimonas fungivorans Ter331] gb|AEK62031.1| Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion [Collimonas fungivorans Ter331] Length = 282 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 158/275 (57%), Positives = 186/275 (67%), Gaps = 13/275 (4%) Query: 1 MSPTPTDGVTQGKESGVAQAAPVSRTKASLLLLTLLAGFFFLVFAALGTWQVYRLQWKLD 60 M P V G+ G A AP +R+ A LL L + AG F F ALGTWQ+ RLQWKLD Sbjct: 1 MKQAPRGMVKDGQ--GAAPVAPRTRSPAVLLALAICAGLVFATFFALGTWQLKRLQWKLD 58 Query: 61 LIAKVDARVHAAPVAPPAAQDWPNVTAERDEYKRVALSGRYLYSKTVAVQASTDLGSGAW 120 LI +V+ RVHA VA P + WP + A+ DEY+RV LSG +LY+ T VQAST+LG G W Sbjct: 59 LIERVEQRVHAPAVAAPGPERWPQINADADEYRRVRLSGTFLYALTARVQASTELGGGFW 118 Query: 121 LLTPLQMADGSVVLINRGFVPVSPLKLADSQLADAPAGQLNEVTGLLRMSEQGGGFLRSN 180 LLTPL+ ADGSVVL+NRGFVP AD Q G EV+GLLRMSE GGGFLR N Sbjct: 119 LLTPLRTADGSVVLVNRGFVPAK----ADVQSGTPEVGPA-EVSGLLRMSEPGGGFLRHN 173 Query: 181 DAAQNRWYSRDVKVIAQARNLPAGQVAPYFVDADKASSEANAASAPDAQKPVGGLTVIAF 240 D A +RWYSRDV+ IA AR L APYF+DAD A++ + +PVGGLTVIAF Sbjct: 174 DPAADRWYSRDVQAIASARGLSPA--APYFIDADAATASHDTG----GNRPVGGLTVIAF 227 Query: 241 HNSHLVYALTWYALALMSLGAGYWVIRDERRWRQR 275 HN+HLVYALTWYALALM GA +WV R+ER R+R Sbjct: 228 HNNHLVYALTWYALALMVAGACFWVGREERNLRRR 262 >ref|YP_001100941.1| SURF1 family protein [Herminiimonas arsenicoxydans] emb|CAL62820.1| Conserved hypothetical protein, putative cytochrome c biogenesis [Herminiimonas arsenicoxydans] Length = 265 Score = 254 bits (650), Expect = 9e-66, Method: Composition-based stats. Identities = 148/270 (54%), Positives = 183/270 (67%), Gaps = 13/270 (4%) Query: 6 TDGVTQGKESG--VAQAAPVSRTKASLLLLTLLAGFFFLVFAALGTWQVYRLQWKLDLIA 63 TD QG +G AA R+ + L+ L ++A F +FAALGTWQVYRLQWKL LI Sbjct: 2 TDVTEQGSGTGSQTEPAAATPRSGSRLIWLVVVASLLFTLFAALGTWQVYRLQWKLALIE 61 Query: 64 KVDARVHAAPVAPPAAQDWPNVTAERDEYKRVALSGRYLYSKTVAVQASTDLGSGAWLLT 123 +V+ RVHAAPV P + W VTA DEY+ V +SG L+ V V A T+LGSG WLLT Sbjct: 62 RVEQRVHAAPVDAPQREHWSQVTAASDEYRHVRVSGVLLHQHAVKVMAVTELGSGFWLLT 121 Query: 124 PLQMADGSVVLINRGFVPVSPLKLADSQLADAPAGQLNEVTGLLRMSEQGGGFLRSNDAA 183 PLQ ADGS+VLINRGF+P + S + P V+GLLR+SE GGGFLR NDAA Sbjct: 122 PLQTADGSIVLINRGFIP------SLSYVEPQPPATEIVVSGLLRISEPGGGFLRENDAA 175 Query: 184 QNRWYSRDVKVIAQARNLPAGQVAPYFVDADKASSEANAASAPD--AQKPVGGLTVIAFH 241 RWYSRDV IA A++L + VAPYF+D D A ++ AS+ D A P+GGLTVI+F+ Sbjct: 176 GGRWYSRDVAAIAAAQHLSS--VAPYFIDQD-ARPQSREASSVDRAAVPPIGGLTVISFN 232 Query: 242 NSHLVYALTWYALALMSLGAGYWVIRDERR 271 N+HLVYALTWY LALM + A +WV+R+ERR Sbjct: 233 NNHLVYALTWYVLALMVIAACWWVLREERR 262 >ref|YP_001354326.1| SurF1 family protein [Janthinobacterium sp. Marseille] gb|ABR89803.1| SurF1 family protein [Janthinobacterium sp. Marseille] Length = 284 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 137/274 (50%), Positives = 179/274 (65%), Gaps = 9/274 (3%) Query: 6 TDGVTQGKESGVAQAAPVSRTKASLLLLTLLAGFFFLVFAALGTWQVYRLQWKLDLIAKV 65 TD Q S +A P+ R++ L +L ++A F ALGTWQVYRLQWKL LI +V Sbjct: 2 TDKSVQTSGSVSKEAGPLFRSRTFLAVLAVIALVLFTGLVALGTWQVYRLQWKLALIERV 61 Query: 66 DARVHAAPVAPPAAQDWPNVTAERDEYKRVALSGRYLYSKTVAVQASTDLGSGAWLLTPL 125 + RVHAA P + W + A DEY+ V++SG YLY ++V VQA T+LG+G W+LTPL Sbjct: 62 EQRVHAAATPAPGPEQWSQINAANDEYRHVSVSGSYLYEQSVKVQAVTELGAGFWVLTPL 121 Query: 126 QMADGSVVLINRGFVPVSPLKLADSQLADAPAGQLNEVTGLLRMSEQGGGFLRSNDAAQN 185 + DG++VLINRG++P + + ++ V+GLLR+SE GGGFLR ND A N Sbjct: 122 RTTDGNIVLINRGYIP------ERATPSVGTPDEVQTVSGLLRISEPGGGFLRHNDPAAN 175 Query: 186 RWYSRDVKVIAQARNLPAGQVAPYFVDADKASS-EANAASAPDAQKPVGGLTVIAFHNSH 244 RWYSRDV+ IA L VAPYF+DA+ + A A+ P +PVGGLTVI+FHN+H Sbjct: 176 RWYSRDVQAIATQHKL--APVAPYFIDAEAGKAVVAKPATDPALAEPVGGLTVISFHNNH 233 Query: 245 LVYALTWYALALMSLGAGYWVIRDERRWRQRIQD 278 LVYALTWYALALM GA +W+ R+ER+ R D Sbjct: 234 LVYALTWYALALMVAGAAFWLRREERKVRATSAD 267 >ref|YP_001372090.1| Surfeit locus 1 family protein [Ochrobactrum anthropi ATCC 49188] gb|ABS16261.1| Surfeit locus 1 family protein [Ochrobactrum anthropi ATCC 49188] Length = 252 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 138/272 (50%), Positives = 171/272 (62%), Gaps = 23/272 (8%) Query: 2 SPTPTDGVTQGKESGVAQAAPVSRTKASLLLLTLLAGFFFLVFAALGTWQVYRLQWKLDL 61 SP TDG + K+SG+ L LLT+L GFFF++F LG WQV RLQWKLDL Sbjct: 3 SPAQTDGQPENKKSGIF-----------LGLLTILVGFFFILFMGLGIWQVERLQWKLDL 51 Query: 62 IAKVDARVHAAPVAPPAAQDWPNVTAERDEYKRVALSGRYLYSKTVAVQASTDLGSGAWL 121 IA+VDARVHA PVA P DW NV + DEY+ V L+G YL K V V A T+ G+G W+ Sbjct: 52 IARVDARVHAEPVAAPGPDDWANVNQKDDEYRHVTLTGTYLNDKEVLVHALTERGAGYWV 111 Query: 122 LTPLQMADGSVVLINRGFVPVSPLKLADSQLADAPAGQLNEVTGLLRMSEQGGGFLRSND 181 LTP++ +DG++ INRGFVP S + S+ AG+ VTGLLRM E G FLR ND Sbjct: 112 LTPMRSSDGALTFINRGFVP-SDKRDPSSRQETQIAGE-TTVTGLLRMPEPDGFFLRPND 169 Query: 182 AAQNRWYSRDVKVIAQARNLPAGQVAPYFVDADKASSEANAASAPDAQKPVGGLTVIAFH 241 A+N W SRDV A+ NL G APYF+DAD A+A P+GGLTV+ F Sbjct: 170 PARNDWNSRDVAAFAKKENL--GPAAPYFIDAD--------ATAGTGALPIGGLTVVKFR 219 Query: 242 NSHLVYALTWYALALMSLGAGYWVIRDERRWR 273 NSHL YA+TW+ALA M GA ++ R ER+ + Sbjct: 220 NSHLSYAITWFALAAMVAGAAIFLWRHERKLK 251