BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3127.p (208 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775869.1| cytochrome o ubiquinol oxidase subunit III p... 382 e-104 ref|YP_004752856.1| cytochrome O ubiquinol oxidase subunit III [... 326 1e-87 ref|YP_001354328.1| cytochrome o ubiquinol oxidase subunit III [... 312 2e-83 ref|ZP_08276293.1| Cytochrome O ubiquinol oxidase subunit III [O... 301 3e-80 ref|YP_001100943.1| cytochrome o ubiquinol oxidase subunit III [... 298 2e-79 >ref|YP_003775869.1| cytochrome o ubiquinol oxidase subunit III protein [Herbaspirillum seropedicae SmR1] gb|ADJ63961.1| cytochrome o ubiquinol oxidase subunit III protein [Herbaspirillum seropedicae SmR1] Length = 208 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 204/208 (98%), Positives = 206/208 (99%) Query: 1 MSEAINHTADATPSSRYFVRHHHPENGTLLGFWIYLMSDCLIFACLFACYAVLGRNYAGG 60 MSEAINHTADATPSSRYFVRHHHPENGTLLGFWIYLMSDCLIFACLFACYAVLGRNYAGG Sbjct: 1 MSEAINHTADATPSSRYFVRHHHPENGTLLGFWIYLMSDCLIFACLFACYAVLGRNYAGG 60 Query: 61 PTGAELFDLPLVALNTALLLLSSITYGFAMLAMQAKKQQNTIIWLIITGLLGAGFIYFEL 120 PTGAELFDLPLVALNTALLLLSSITYGFAMLAMQAKKQQNTI WLIITGLLGAGFIYFEL Sbjct: 61 PTGAELFDLPLVALNTALLLLSSITYGFAMLAMQAKKQQNTIFWLIITGLLGAGFIYFEL 120 Query: 121 YEFLHLIHEGAGPARSGFLTSFFALVGTHGLHVSFGIIWLIVLLFQINKHGLTEANGRRL 180 YEFLHLIHEGAGP RSGFLTSFFALVGTHGLHV+FGIIWL+VLLFQINKHGLTEANGRRL Sbjct: 121 YEFLHLIHEGAGPTRSGFLTSFFALVGTHGLHVTFGIIWLVVLLFQINKHGLTEANGRRL 180 Query: 181 MCLSMFWHFLDVVWIGVFTFVYLMGVLP 208 MCLSMFWHFLDVVWIGVFTFVYLMGVLP Sbjct: 181 MCLSMFWHFLDVVWIGVFTFVYLMGVLP 208 >ref|YP_004752856.1| cytochrome O ubiquinol oxidase subunit III [Collimonas fungivorans Ter331] gb|AEK62033.1| Cytochrome O ubiquinol oxidase subunit III [Collimonas fungivorans Ter331] Length = 218 Score = 326 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 165/204 (80%), Positives = 183/204 (89%) Query: 5 INHTADATPSSRYFVRHHHPENGTLLGFWIYLMSDCLIFACLFACYAVLGRNYAGGPTGA 64 +N + A PS+R++ R HHPENGTLLGFW+YLMSDCLIFACLFA YAVLGRNYAGGPTGA Sbjct: 15 MNTNSAADPSARFYTREHHPENGTLLGFWLYLMSDCLIFACLFATYAVLGRNYAGGPTGA 74 Query: 65 ELFDLPLVALNTALLLLSSITYGFAMLAMQAKKQQNTIIWLIITGLLGAGFIYFELYEFL 124 ELFDLPLVA+NT+LLLLSSITYGFAML MQ K+Q T+ WL +TG+LGA FI FELYEF+ Sbjct: 75 ELFDLPLVAVNTSLLLLSSITYGFAMLEMQRKRQGATLAWLAVTGILGACFIGFELYEFV 134 Query: 125 HLIHEGAGPARSGFLTSFFALVGTHGLHVSFGIIWLIVLLFQINKHGLTEANGRRLMCLS 184 HLIHEGAGP RSGFLTSFFALV THGLHVSFGI+WL+ L+FQ+ +HGLT NGRRLMCLS Sbjct: 135 HLIHEGAGPQRSGFLTSFFALVATHGLHVSFGIVWLVTLMFQVKRHGLTAENGRRLMCLS 194 Query: 185 MFWHFLDVVWIGVFTFVYLMGVLP 208 MFWHFLDVVWIGVFTFVYLMGVLP Sbjct: 195 MFWHFLDVVWIGVFTFVYLMGVLP 218 >ref|YP_001354328.1| cytochrome o ubiquinol oxidase subunit III [Janthinobacterium sp. Marseille] gb|ABR89095.1| cytochrome o ubiquinol oxidase subunit III [Janthinobacterium sp. Marseille] Length = 210 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 162/198 (81%), Positives = 175/198 (88%) Query: 11 ATPSSRYFVRHHHPENGTLLGFWIYLMSDCLIFACLFACYAVLGRNYAGGPTGAELFDLP 70 A PS+RY+V+ HHPENGTLLGFW+YLMSDCLIFACLFA YAVLGRNYAGGPTGAELFDLP Sbjct: 13 ADPSARYYVQEHHPENGTLLGFWLYLMSDCLIFACLFATYAVLGRNYAGGPTGAELFDLP 72 Query: 71 LVALNTALLLLSSITYGFAMLAMQAKKQQNTIIWLIITGLLGAGFIYFELYEFLHLIHEG 130 LVA NTA LLLSSITYGFAML Q K+ + T+IWL ITGLLGA F+ ELYEF HLIHEG Sbjct: 73 LVAANTAFLLLSSITYGFAMLEAQRKRLKATMIWLAITGLLGAAFLALELYEFSHLIHEG 132 Query: 131 AGPARSGFLTSFFALVGTHGLHVSFGIIWLIVLLFQINKHGLTEANGRRLMCLSMFWHFL 190 AGP RS FLTSFFALV THGLHV+FGIIWLI L+FQ+ +HGL NGRRLMCLSMFWHFL Sbjct: 133 AGPQRSAFLTSFFALVATHGLHVTFGIIWLITLMFQLKRHGLIPENGRRLMCLSMFWHFL 192 Query: 191 DVVWIGVFTFVYLMGVLP 208 DV+WIGVFTFVYLMGVLP Sbjct: 193 DVIWIGVFTFVYLMGVLP 210 >ref|ZP_08276293.1| Cytochrome O ubiquinol oxidase subunit III [Oxalobacteraceae bacterium IMCC9480] gb|EGF30240.1| Cytochrome O ubiquinol oxidase subunit III [Oxalobacteraceae bacterium IMCC9480] Length = 202 Score = 301 bits (772), Expect = 3e-80, Method: Composition-based stats. Identities = 157/201 (78%), Positives = 176/201 (87%) Query: 8 TADATPSSRYFVRHHHPENGTLLGFWIYLMSDCLIFACLFACYAVLGRNYAGGPTGAELF 67 T+ T S+RY+V HHPENGT LGFW+YLMSDCL+FA LFA YAVLGRNYAGGPTGAELF Sbjct: 2 TSPTTDSTRYYVLEHHPENGTTLGFWLYLMSDCLVFAALFAVYAVLGRNYAGGPTGAELF 61 Query: 68 DLPLVALNTALLLLSSITYGFAMLAMQAKKQQNTIIWLIITGLLGAGFIYFELYEFLHLI 127 DLPLVALNTA LL+SSITYGFAML MQ K+ ++T+IW+ ITGL+GA FI E+YEF+HLI Sbjct: 62 DLPLVALNTAFLLVSSITYGFAMLEMQRKRVRSTLIWMGITGLIGACFIGLEMYEFIHLI 121 Query: 128 HEGAGPARSGFLTSFFALVGTHGLHVSFGIIWLIVLLFQINKHGLTEANGRRLMCLSMFW 187 HEGAGP RSGFLT+FF LVGTHGLHV FGIIWL+ L+ Q++ HGLT N RRLMCLSMFW Sbjct: 122 HEGAGPQRSGFLTAFFTLVGTHGLHVMFGIIWLVTLMLQVSVHGLTTENSRRLMCLSMFW 181 Query: 188 HFLDVVWIGVFTFVYLMGVLP 208 HFLDVVWIGVFTFVYLMGVLP Sbjct: 182 HFLDVVWIGVFTFVYLMGVLP 202 >ref|YP_001100943.1| cytochrome o ubiquinol oxidase subunit III [Herminiimonas arsenicoxydans] emb|CAL62822.1| Cytochrome o ubiquinol oxidase subunit 3 (Cytochrome o ubiquinol oxidase subunit III) [Herminiimonas arsenicoxydans] Length = 214 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 156/207 (75%), Positives = 175/207 (84%) Query: 2 SEAINHTADATPSSRYFVRHHHPENGTLLGFWIYLMSDCLIFACLFACYAVLGRNYAGGP 61 S I+ + A S+RY+V+ HHPE+ T LGFWIYLMSDCLIFACLFA YAVLGR+YAGGP Sbjct: 8 SADISAMSSADASTRYYVKEHHPESSTSLGFWIYLMSDCLIFACLFATYAVLGRSYAGGP 67 Query: 62 TGAELFDLPLVALNTALLLLSSITYGFAMLAMQAKKQQNTIIWLIITGLLGAGFIYFELY 121 TGAELFDLPLVA+NTA LL+SSITYG AML + ++T+IWL ITG+LGAGF+ ELY Sbjct: 68 TGAELFDLPLVAMNTAFLLVSSITYGVAMLEAHRNRVRSTLIWLAITGMLGAGFLALELY 127 Query: 122 EFLHLIHEGAGPARSGFLTSFFALVGTHGLHVSFGIIWLIVLLFQINKHGLTEANGRRLM 181 EF HLIHEGAGP S FLTSFFALVGTHGLHV+FGIIWLIVL+FQ+ K GL N RRLM Sbjct: 128 EFNHLIHEGAGPQTSAFLTSFFALVGTHGLHVTFGIIWLIVLMFQVGKFGLNVENKRRLM 187 Query: 182 CLSMFWHFLDVVWIGVFTFVYLMGVLP 208 CLSMFWHFLDV+WIGVFTFVYLMGVLP Sbjct: 188 CLSMFWHFLDVIWIGVFTFVYLMGVLP 214