BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3126.p (443 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775870.1| cytochrome o ubiquinol oxidase subunit I pro... 811 0.0 ref|YP_004752857.1| cytochrome O ubiquinol oxidase subunit I [Co... 741 0.0 ref|YP_001354329.1| cytochrome o ubiquinol oxidase subunit I [Ja... 717 0.0 ref|YP_004156986.1| cytochrome o ubiquinol oxidase subunit i [Va... 707 0.0 ref|YP_002945927.1| cytochrome o ubiquinol oxidase subunit I [Va... 702 0.0 >ref|YP_003775870.1| cytochrome o ubiquinol oxidase subunit I protein [Herbaspirillum seropedicae SmR1] gb|ADJ63962.1| cytochrome o ubiquinol oxidase subunit I protein [Herbaspirillum seropedicae SmR1] Length = 667 Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats. Identities = 427/443 (96%), Positives = 435/443 (98%) Query: 1 MRAPGMNMMKMPVFTWTSLCTNVLIVAAFPVLTAVLGMLSLDRIFGTNFFTNDMGGNAMM 60 MRAPGMNMMKMPVFTWTSLCTNVLIVAAFPVLTAVL MLSLDR+FGTNFFTNDMGGNAMM Sbjct: 225 MRAPGMNMMKMPVFTWTSLCTNVLIVAAFPVLTAVLAMLSLDRVFGTNFFTNDMGGNAMM 284 Query: 61 YVNLIWIWGHPEVYILILPAFGVFSEIVSTFSGKRLFGYTSMVHATVVITILSYLVWLHH 120 YVNLIWIWGHPEVYIL+LPAFG+FSEIVSTFSGKRLFGYTSMV+ATVVITILSYLVWLHH Sbjct: 285 YVNLIWIWGHPEVYILVLPAFGIFSEIVSTFSGKRLFGYTSMVYATVVITILSYLVWLHH 344 Query: 121 FFTMGSGASVNSFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPMLWTIGFMVTFVIG 180 FFTMGSGASVNSFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPMLWTIGFMVTFVIG Sbjct: 345 FFTMGSGASVNSFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPMLWTIGFMVTFVIG 404 Query: 181 GMTGVLLAVPPADFVLHNSLFLIAHFHNVIIGGVVFGMFAGINFWFPKAFGFKLNEFWGK 240 GMTGVLLAVPPADFVLHNSLFLIAHFHNVIIGGVVFGMFAGINFWFPKAFGFKLNEFWGK Sbjct: 405 GMTGVLLAVPPADFVLHNSLFLIAHFHNVIIGGVVFGMFAGINFWFPKAFGFKLNEFWGK 464 Query: 241 CSFWFWLVGFYLAFMPLYVLGLMGVTRRMSHFDDPSLQIWFVVAALGAGLIALGIGSFII 300 CSFWFWLVGFYLAFMPLYVLGLMGVTRRMSHFDDPSLQIWFVVAA+GAGLIALGIGSFII Sbjct: 465 CSFWFWLVGFYLAFMPLYVLGLMGVTRRMSHFDDPSLQIWFVVAAIGAGLIALGIGSFII 524 Query: 301 QIAVSIRDRKKLADVTGDPWNGRTLEWSTSSPPPAYNFAFTPVVHDNDAWADMKKNNYQR 360 QIAVSIRDRKKLADVTGDPWNGRTLEWSTSSPPPAYNFAFTPVVHDNDAWADMKKN YQR Sbjct: 525 QIAVSIRDRKKLADVTGDPWNGRTLEWSTSSPPPAYNFAFTPVVHDNDAWADMKKNKYQR 584 Query: 361 PLGDFVEIHMPKNTGAGFIIAALSAAVGFAMIWHMWLPAVAGFVALCVATIVHTFNYNRD 420 PLGDFVEIHMPKNTGAGFIIAALSA +GF +IWHMWLPAVA FV L ATI+HTFNYNRD Sbjct: 585 PLGDFVEIHMPKNTGAGFIIAALSAVLGFTLIWHMWLPAVATFVVLVAATIIHTFNYNRD 644 Query: 421 YYIPADEVVRVEAERTRLLNSHV 443 YYIPADEVVRVEAERTRLLNSHV Sbjct: 645 YYIPADEVVRVEAERTRLLNSHV 667 >ref|YP_004752857.1| cytochrome O ubiquinol oxidase subunit I [Collimonas fungivorans Ter331] gb|AEK62034.1| Cytochrome O ubiquinol oxidase subunit I [Collimonas fungivorans Ter331] Length = 682 Score = 741 bits (1912), Expect = 0.0, Method: Composition-based stats. Identities = 384/443 (86%), Positives = 407/443 (91%) Query: 1 MRAPGMNMMKMPVFTWTSLCTNVLIVAAFPVLTAVLGMLSLDRIFGTNFFTNDMGGNAMM 60 MRAPGMNMMKMPVFTWT+LCTNVLIVAAFPVLTAVLGMLSLDRI GTNFFTNDMGGNAMM Sbjct: 240 MRAPGMNMMKMPVFTWTALCTNVLIVAAFPVLTAVLGMLSLDRIVGTNFFTNDMGGNAMM 299 Query: 61 YVNLIWIWGHPEVYILILPAFGVFSEIVSTFSGKRLFGYTSMVHATVVITILSYLVWLHH 120 YVNLIWIWGHPEVYILILPAFG+FSE+VSTFS KRLFGYTSMV+ATVVITILSYLVWLHH Sbjct: 300 YVNLIWIWGHPEVYILILPAFGIFSEVVSTFSSKRLFGYTSMVYATVVITILSYLVWLHH 359 Query: 121 FFTMGSGASVNSFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPMLWTIGFMVTFVIG 180 FFTMGSGASVNSFFGITTMIISIPTGAKIFNWLFTMYRGRIRFE+PMLWTIGFM+TFVIG Sbjct: 360 FFTMGSGASVNSFFGITTMIISIPTGAKIFNWLFTMYRGRIRFELPMLWTIGFMITFVIG 419 Query: 181 GMTGVLLAVPPADFVLHNSLFLIAHFHNVIIGGVVFGMFAGINFWFPKAFGFKLNEFWGK 240 GMTGVLLAVPPADFVLHNSLFLIAHFHNVIIGGV+FGMFAGIN+WFPKAFG+KL++FWGK Sbjct: 420 GMTGVLLAVPPADFVLHNSLFLIAHFHNVIIGGVLFGMFAGINYWFPKAFGYKLDDFWGK 479 Query: 241 CSFWFWLVGFYLAFMPLYVLGLMGVTRRMSHFDDPSLQIWFVVAALGAGLIALGIGSFII 300 C FWFW +GFY+AFMPLYVLGLMGVTRR+ HF+DPSLQIWF +AA GA LIALGI SFI+ Sbjct: 480 CCFWFWTIGFYIAFMPLYVLGLMGVTRRLGHFEDPSLQIWFQIAAFGAVLIALGIASFIV 539 Query: 301 QIAVSIRDRKKLADVTGDPWNGRTLEWSTSSPPPAYNFAFTPVVHDNDAWADMKKNNYQR 360 Q+ VS R R+ L D TGDPW RTLEWSTSSPPP YNFAFTPVVHDNDAW DMK N Y R Sbjct: 540 QLVVSFRRRESLRDTTGDPWGARTLEWSTSSPPPDYNFAFTPVVHDNDAWTDMKANGYAR 599 Query: 361 PLGDFVEIHMPKNTGAGFIIAALSAAVGFAMIWHMWLPAVAGFVALCVATIVHTFNYNRD 420 PL DFV IHMPKNT AGFIIAALSAAVGFA+IWHMWL A GF A+ A I+HTFNYNRD Sbjct: 600 PLKDFVAIHMPKNTAAGFIIAALSAAVGFALIWHMWLVAGLGFAAMMAAIIIHTFNYNRD 659 Query: 421 YYIPADEVVRVEAERTRLLNSHV 443 Y+I ADEVVR E ERTRLL SHV Sbjct: 660 YHISADEVVRTEGERTRLLASHV 682 >ref|YP_001354329.1| cytochrome o ubiquinol oxidase subunit I [Janthinobacterium sp. Marseille] gb|ABR88967.1| cytochrome o ubiquinol oxidase subunit I [Janthinobacterium sp. Marseille] Length = 667 Score = 717 bits (1851), Expect = 0.0, Method: Composition-based stats. Identities = 371/443 (83%), Positives = 400/443 (90%) Query: 1 MRAPGMNMMKMPVFTWTSLCTNVLIVAAFPVLTAVLGMLSLDRIFGTNFFTNDMGGNAMM 60 MRAPGM+MMKMPVFTWT+LCTNVLIVAAFPVLTAVLGML+LDR+ TNFFTND+GGNAMM Sbjct: 225 MRAPGMDMMKMPVFTWTALCTNVLIVAAFPVLTAVLGMLTLDRVLDTNFFTNDLGGNAMM 284 Query: 61 YVNLIWIWGHPEVYILILPAFGVFSEIVSTFSGKRLFGYTSMVHATVVITILSYLVWLHH 120 YVNLIWIWGHPEVYILILP FGVFSE+VSTFS KRLFGYTSMV+ATVVITILSYLVWLHH Sbjct: 285 YVNLIWIWGHPEVYILILPLFGVFSEVVSTFSAKRLFGYTSMVYATVVITILSYLVWLHH 344 Query: 121 FFTMGSGASVNSFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPMLWTIGFMVTFVIG 180 FFTMGSGASVNSFFGITTMIISIPTGAKIFNWLFTMYRGRIRFE+PM+WTIGFM+TFVIG Sbjct: 345 FFTMGSGASVNSFFGITTMIISIPTGAKIFNWLFTMYRGRIRFELPMMWTIGFMITFVIG 404 Query: 181 GMTGVLLAVPPADFVLHNSLFLIAHFHNVIIGGVVFGMFAGINFWFPKAFGFKLNEFWGK 240 GMTGVLLAVPPADFVLHNSLFLIAHFHNVIIGGV+FG+FAGIN+WFPKAFG+KL+ FWGK Sbjct: 405 GMTGVLLAVPPADFVLHNSLFLIAHFHNVIIGGVLFGLFAGINYWFPKAFGYKLDVFWGK 464 Query: 241 CSFWFWLVGFYLAFMPLYVLGLMGVTRRMSHFDDPSLQIWFVVAALGAGLIALGIGSFII 300 CSFWFW+VGF++AFMPLY+LGLMGVTRRMS F DPSLQIWF VAA GA LIALGI S +I Sbjct: 465 CSFWFWIVGFWMAFMPLYILGLMGVTRRMSQFQDPSLQIWFQVAAFGAVLIALGIASMLI 524 Query: 301 QIAVSIRDRKKLADVTGDPWNGRTLEWSTSSPPPAYNFAFTPVVHDNDAWADMKKNNYQR 360 Q VS R R +L DVTGDPW+GRTLEWSTSSPPP YNFAFTP VHDND WADMKKN Y+R Sbjct: 525 QFYVSFRRRHELRDVTGDPWDGRTLEWSTSSPPPDYNFAFTPKVHDNDTWADMKKNGYKR 584 Query: 361 PLGDFVEIHMPKNTGAGFIIAALSAAVGFAMIWHMWLPAVAGFVALCVATIVHTFNYNRD 420 PL F IHMPKNTGAGFII+A+SAA+GF +IW MWL A FV L I+HTFNY RD Sbjct: 585 PLEGFTAIHMPKNTGAGFIISAISAAIGFCLIWQMWLLAGVSFVVLLAVIIIHTFNYKRD 644 Query: 421 YYIPADEVVRVEAERTRLLNSHV 443 YYIPA+EV R E RTRLL SHV Sbjct: 645 YYIPAEEVARTENLRTRLLESHV 667 >ref|YP_004156986.1| cytochrome o ubiquinol oxidase subunit i [Variovorax paradoxus EPS] gb|ADU38875.1| cytochrome o ubiquinol oxidase, subunit I [Variovorax paradoxus EPS] Length = 676 Score = 707 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 366/439 (83%), Positives = 395/439 (89%) Query: 1 MRAPGMNMMKMPVFTWTSLCTNVLIVAAFPVLTAVLGMLSLDRIFGTNFFTNDMGGNAMM 60 MRAPGM MMKMPVFTWT+LCTNVLIVAAFPVLTAVL +LSLDR GTNFFTND+GGNAMM Sbjct: 227 MRAPGMTMMKMPVFTWTALCTNVLIVAAFPVLTAVLALLSLDRYVGTNFFTNDLGGNAMM 286 Query: 61 YVNLIWIWGHPEVYILILPAFGVFSEIVSTFSGKRLFGYTSMVHATVVITILSYLVWLHH 120 YVNLIWIWGHPEVYILILPAFG+FSE+VSTFSGKRLFGY SMV+ATVVITILSYLVWLHH Sbjct: 287 YVNLIWIWGHPEVYILILPAFGIFSEVVSTFSGKRLFGYASMVYATVVITILSYLVWLHH 346 Query: 121 FFTMGSGASVNSFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPMLWTIGFMVTFVIG 180 FFTMGSGASVNSFFGITTMIISIPTGAKIFNWLFTMYRGRIR+E+PM+WTIGFM+TFVIG Sbjct: 347 FFTMGSGASVNSFFGITTMIISIPTGAKIFNWLFTMYRGRIRYELPMMWTIGFMITFVIG 406 Query: 181 GMTGVLLAVPPADFVLHNSLFLIAHFHNVIIGGVVFGMFAGINFWFPKAFGFKLNEFWGK 240 GMTGVLLAVPPADFVLHNSLFLIAHFHNVIIGGV+FGM AGI +WFPKAFG+KL+ FWGK Sbjct: 407 GMTGVLLAVPPADFVLHNSLFLIAHFHNVIIGGVLFGMLAGITYWFPKAFGYKLDPFWGK 466 Query: 241 CSFWFWLVGFYLAFMPLYVLGLMGVTRRMSHFDDPSLQIWFVVAALGAGLIALGIGSFII 300 CSFWFW++GF+ AFMPLY+LGLMGVTRRMSHF D SLQIWF +AA GA LIALGI SFII Sbjct: 467 CSFWFWIIGFWFAFMPLYILGLMGVTRRMSHFQDMSLQIWFQIAAFGAVLIALGIASFII 526 Query: 301 QIAVSIRDRKKLADVTGDPWNGRTLEWSTSSPPPAYNFAFTPVVHDNDAWADMKKNNYQR 360 Q+ VS R L D TGDPWNGRTLEWSTSSPPPAYNFAFTP +HDNDAW DMK+ Y+R Sbjct: 527 QLVVSYIRRDSLRDTTGDPWNGRTLEWSTSSPPPAYNFAFTPRIHDNDAWTDMKRRGYER 586 Query: 361 PLGDFVEIHMPKNTGAGFIIAALSAAVGFAMIWHMWLPAVAGFVALCVATIVHTFNYNRD 420 PL F IHMPKNT AGFIIAAL+A GFA+IW MWL A GFVA+ A I+HTFNY RD Sbjct: 587 PLEGFTPIHMPKNTSAGFIIAALAAVCGFALIWQMWLVAGIGFVAMLAAVIIHTFNYKRD 646 Query: 421 YYIPADEVVRVEAERTRLL 439 YYIPA++VVR E ERTRLL Sbjct: 647 YYIPAEDVVRTEGERTRLL 665 >ref|YP_002945927.1| cytochrome o ubiquinol oxidase subunit I [Variovorax paradoxus S110] gb|ACS20661.1| cytochrome o ubiquinol oxidase, subunit I [Variovorax paradoxus S110] Length = 670 Score = 702 bits (1813), Expect = 0.0, Method: Composition-based stats. Identities = 366/439 (83%), Positives = 391/439 (89%) Query: 1 MRAPGMNMMKMPVFTWTSLCTNVLIVAAFPVLTAVLGMLSLDRIFGTNFFTNDMGGNAMM 60 MRAPGM MMKMPVFTWT+LCTNVLIVAAFPVLTAVL +LSLDR GTNFFTND+GGNAMM Sbjct: 227 MRAPGMTMMKMPVFTWTALCTNVLIVAAFPVLTAVLALLSLDRYVGTNFFTNDLGGNAMM 286 Query: 61 YVNLIWIWGHPEVYILILPAFGVFSEIVSTFSGKRLFGYTSMVHATVVITILSYLVWLHH 120 YVNLIWIWGHPEVYILILPAFG+FSE+VSTFSGKRLFGY SMV+ATVVITILSYLVWLHH Sbjct: 287 YVNLIWIWGHPEVYILILPAFGIFSEVVSTFSGKRLFGYASMVYATVVITILSYLVWLHH 346 Query: 121 FFTMGSGASVNSFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPMLWTIGFMVTFVIG 180 FFTMGSGASVNSFFGITTMIISIPTGAKIFNWLFTMYRGRIRFE+PM+WTIGFM+TFVIG Sbjct: 347 FFTMGSGASVNSFFGITTMIISIPTGAKIFNWLFTMYRGRIRFELPMMWTIGFMITFVIG 406 Query: 181 GMTGVLLAVPPADFVLHNSLFLIAHFHNVIIGGVVFGMFAGINFWFPKAFGFKLNEFWGK 240 GMTGVLLAVPPADFVLHNSLFLIAHFHNVIIGGV+FGM AGI +WFPKAFG+KL+ FWGK Sbjct: 407 GMTGVLLAVPPADFVLHNSLFLIAHFHNVIIGGVLFGMLAGITYWFPKAFGYKLDPFWGK 466 Query: 241 CSFWFWLVGFYLAFMPLYVLGLMGVTRRMSHFDDPSLQIWFVVAALGAGLIALGIGSFII 300 CSFWFWLVGF+ AFMPLY+LGLMGVTRRMSHF D SLQIWF VAA GA LIALGI SFII Sbjct: 467 CSFWFWLVGFWFAFMPLYILGLMGVTRRMSHFQDMSLQIWFQVAAFGAVLIALGIASFII 526 Query: 301 QIAVSIRDRKKLADVTGDPWNGRTLEWSTSSPPPAYNFAFTPVVHDNDAWADMKKNNYQR 360 Q+ VS R L D TGDPWNGRTLEWSTSSPPPAYNFAFTP +HDNDAW DMK+ Y R Sbjct: 527 QLVVSYIRRDSLRDTTGDPWNGRTLEWSTSSPPPAYNFAFTPRIHDNDAWTDMKRRGYSR 586 Query: 361 PLGDFVEIHMPKNTGAGFIIAALSAAVGFAMIWHMWLPAVAGFVALCVATIVHTFNYNRD 420 P+ F IHMPKNT AGFIIAAL+ GFA+IW MWL A F A+ A I+HTFNY RD Sbjct: 587 PVDGFTPIHMPKNTAAGFIIAALAGTCGFALIWQMWLVAGVAFFAMLAAVIIHTFNYKRD 646 Query: 421 YYIPADEVVRVEAERTRLL 439 Y+IPA+EVVR E ERTRLL Sbjct: 647 YHIPAEEVVRTEDERTRLL 665