BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3125.p (208 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775870.1| cytochrome o ubiquinol oxidase subunit I pro... 328 3e-88 ref|YP_004752857.1| cytochrome O ubiquinol oxidase subunit I [Co... 291 4e-77 ref|YP_001354329.1| cytochrome o ubiquinol oxidase subunit I [Ja... 288 3e-76 ref|YP_001100944.1| cytochrome o ubiquinol oxidase subunit I [He... 286 1e-75 ref|YP_002945927.1| cytochrome o ubiquinol oxidase subunit I [Va... 281 4e-74 >ref|YP_003775870.1| cytochrome o ubiquinol oxidase subunit I protein [Herbaspirillum seropedicae SmR1] gb|ADJ63962.1| cytochrome o ubiquinol oxidase subunit I protein [Herbaspirillum seropedicae SmR1] Length = 667 Score = 328 bits (841), Expect = 3e-88, Method: Composition-based stats. Identities = 177/182 (97%), Positives = 178/182 (97%), Gaps = 1/182 (0%) Query: 1 MSDNFDLIKLIFGRLSLEAIPYHEPILIGTFAMVALGGIVVLGLLTKYRLWGMLWRDWFT 60 MSDNFDLIKLIFGRLSLEAIPYHEPILIGTFAMVALGGIVVLGLLTKYRLWGMLWRDWFT Sbjct: 1 MSDNFDLIKLIFGRLSLEAIPYHEPILIGTFAMVALGGIVVLGLLTKYRLWGMLWRDWFT 60 Query: 61 SIDHKRIGIMYIVLAIVMLLRGFADALMMRAQQAIAFGDNAGFLPPHHYDQVFTAHGVIM 120 SIDHKRIGIMYIVLAIVMLLRGFADA+MMRAQQAIAFGDNAGFLPPHHYDQVFTAHGVIM Sbjct: 61 SIDHKRIGIMYIVLAIVMLLRGFADAVMMRAQQAIAFGDNAGFLPPHHYDQVFTAHGVIM 120 Query: 121 IFFVAMPLVTGLMNYVVPLQIGARDVAFPFLNNFSFWMTTFGALLVMASLFVGESPAPAG 180 IFFVAMPLVTGLMNYVVPLQIGARDVAFPFLNNFSFWMTTFGALLVMASLFVGE A G Sbjct: 121 IFFVAMPLVTGLMNYVVPLQIGARDVAFPFLNNFSFWMTTFGALLVMASLFVGEF-ARTG 179 Query: 181 WL 182 WL Sbjct: 180 WL 181 >ref|YP_004752857.1| cytochrome O ubiquinol oxidase subunit I [Collimonas fungivorans Ter331] gb|AEK62034.1| Cytochrome O ubiquinol oxidase subunit I [Collimonas fungivorans Ter331] Length = 682 Score = 291 bits (745), Expect = 4e-77, Method: Composition-based stats. Identities = 153/182 (84%), Positives = 164/182 (90%), Gaps = 1/182 (0%) Query: 1 MSDNFDLIKLIFGRLSLEAIPYHEPILIGTFAMVALGGIVVLGLLTKYRLWGMLWRDWFT 60 M D+ DL KLIFGRL+ EAIPYHEPILI TF MVA+GG VLG LT Y++WG LWRDWFT Sbjct: 16 MLDHIDLTKLIFGRLTWEAIPYHEPILIATFLMVAIGGAAVLGALTYYKVWGTLWRDWFT 75 Query: 61 SIDHKRIGIMYIVLAIVMLLRGFADALMMRAQQAIAFGDNAGFLPPHHYDQVFTAHGVIM 120 SIDHK+IGIMY+VL +VMLLRGFADALMMRAQQA AFGD+AGFLPPHHYDQ+FTAHGVIM Sbjct: 76 SIDHKKIGIMYVVLGLVMLLRGFADALMMRAQQAFAFGDSAGFLPPHHYDQIFTAHGVIM 135 Query: 121 IFFVAMPLVTGLMNYVVPLQIGARDVAFPFLNNFSFWMTTFGALLVMASLFVGESPAPAG 180 IFFVAMPLVTGLMNYVVPLQIGARDVAFPFLNNFSFWMTTFG +LVMASLFVGE A G Sbjct: 136 IFFVAMPLVTGLMNYVVPLQIGARDVAFPFLNNFSFWMTTFGGMLVMASLFVGEF-ARTG 194 Query: 181 WL 182 WL Sbjct: 195 WL 196 >ref|YP_001354329.1| cytochrome o ubiquinol oxidase subunit I [Janthinobacterium sp. Marseille] gb|ABR88967.1| cytochrome o ubiquinol oxidase subunit I [Janthinobacterium sp. Marseille] Length = 667 Score = 288 bits (737), Expect = 3e-76, Method: Composition-based stats. Identities = 151/182 (82%), Positives = 165/182 (90%), Gaps = 1/182 (0%) Query: 1 MSDNFDLIKLIFGRLSLEAIPYHEPILIGTFAMVALGGIVVLGLLTKYRLWGMLWRDWFT 60 M D+ DL KLIFGRLS +AIP+HEPIL+ TFAMV LGGI VLG +T +RLWG LWRDW T Sbjct: 1 MQDHTDLTKLIFGRLSWDAIPFHEPILLVTFAMVILGGIAVLGGITYFRLWGTLWRDWIT 60 Query: 61 SIDHKRIGIMYIVLAIVMLLRGFADALMMRAQQAIAFGDNAGFLPPHHYDQVFTAHGVIM 120 SIDHK+IGIMY++L ++ML+RGFADALMMRAQQAIAFGDN GFLPPHHYDQ+FTAHGVIM Sbjct: 61 SIDHKKIGIMYMILGLIMLMRGFADALMMRAQQAIAFGDNPGFLPPHHYDQIFTAHGVIM 120 Query: 121 IFFVAMPLVTGLMNYVVPLQIGARDVAFPFLNNFSFWMTTFGALLVMASLFVGESPAPAG 180 IFFVAMPLVTGLMNYVVPLQIGARDVAFPFLNNFSFWMTTFGA+LVMASLFVGE A G Sbjct: 121 IFFVAMPLVTGLMNYVVPLQIGARDVAFPFLNNFSFWMTTFGAVLVMASLFVGEF-AKTG 179 Query: 181 WL 182 WL Sbjct: 180 WL 181 >ref|YP_001100944.1| cytochrome o ubiquinol oxidase subunit I [Herminiimonas arsenicoxydans] emb|CAL62823.1| Ubiquinol oxidase subunit 1 (Ubiquinol oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase BO(3) subunit 1) (Cytochrome o ubiquinol oxidase subunit 1) (Ubiquinol oxidase chain A) [Herminiimonas arsenicoxydans] Length = 667 Score = 286 bits (732), Expect = 1e-75, Method: Composition-based stats. Identities = 148/182 (81%), Positives = 165/182 (90%), Gaps = 1/182 (0%) Query: 1 MSDNFDLIKLIFGRLSLEAIPYHEPILIGTFAMVALGGIVVLGLLTKYRLWGMLWRDWFT 60 M D+ DL KLIFGRLS +AIP+HEPIL+ TFAMV LGG+ ++G LT YR+WG LWRDW T Sbjct: 1 MQDHTDLTKLIFGRLSWDAIPFHEPILLITFAMVLLGGVAMVGALTYYRVWGTLWRDWIT 60 Query: 61 SIDHKRIGIMYIVLAIVMLLRGFADALMMRAQQAIAFGDNAGFLPPHHYDQVFTAHGVIM 120 SIDHK+IGIMY++L +VML+RGFADALMMRAQQA+AFGDNAGFLPPHHYDQ+FTAHGVIM Sbjct: 61 SIDHKKIGIMYMILGLVMLMRGFADALMMRAQQAMAFGDNAGFLPPHHYDQIFTAHGVIM 120 Query: 121 IFFVAMPLVTGLMNYVVPLQIGARDVAFPFLNNFSFWMTTFGALLVMASLFVGESPAPAG 180 IFFVAMPLVTGLMNYVVPLQIGARDVAFPFLNNFSFWMTTFGA+L+M SLFVGE A G Sbjct: 121 IFFVAMPLVTGLMNYVVPLQIGARDVAFPFLNNFSFWMTTFGAVLIMVSLFVGEF-AKTG 179 Query: 181 WL 182 WL Sbjct: 180 WL 181 >ref|YP_002945927.1| cytochrome o ubiquinol oxidase subunit I [Variovorax paradoxus S110] gb|ACS20661.1| cytochrome o ubiquinol oxidase, subunit I [Variovorax paradoxus S110] Length = 670 Score = 281 bits (719), Expect = 4e-74, Method: Composition-based stats. Identities = 147/182 (80%), Positives = 163/182 (89%), Gaps = 1/182 (0%) Query: 1 MSDNFDLIKLIFGRLSLEAIPYHEPILIGTFAMVALGGIVVLGLLTKYRLWGMLWRDWFT 60 M +N DL KLIFGRL+ EAIPYHEPIL+ TF V LGG+ +LG +T Y++WG LWRDW T Sbjct: 3 MFENLDLTKLIFGRLTWEAIPYHEPILLVTFIAVVLGGLALLGAITYYKVWGTLWRDWIT 62 Query: 61 SIDHKRIGIMYIVLAIVMLLRGFADALMMRAQQAIAFGDNAGFLPPHHYDQVFTAHGVIM 120 SIDHK+IGIMYI+L +VMLLRGF+DA+MMRAQQA+AFGDNAGFLPPHHYDQ+FTAHGVIM Sbjct: 63 SIDHKKIGIMYIILGLVMLLRGFSDAIMMRAQQAVAFGDNAGFLPPHHYDQIFTAHGVIM 122 Query: 121 IFFVAMPLVTGLMNYVVPLQIGARDVAFPFLNNFSFWMTTFGALLVMASLFVGESPAPAG 180 IFFVAMPLVTGLMN+VVPLQIGARDVAFPFLNNFSFWMTTFGA LVMASLFVGE A G Sbjct: 123 IFFVAMPLVTGLMNFVVPLQIGARDVAFPFLNNFSFWMTTFGAGLVMASLFVGEF-AKTG 181 Query: 181 WL 182 WL Sbjct: 182 WL 183