BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3124.p (310 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775871.1| cytochrome o ubiquinol oxidase subunit II pr... 563 e-158 ref|YP_004156985.1| ubiquinol oxidase subunit ii [Variovorax par... 452 e-125 ref|YP_002945926.1| ubiquinol oxidase subunit II [Variovorax par... 446 e-123 ref|YP_771075.1| putative ubiquinol oxidase polypeptide II precu... 443 e-122 ref|YP_001354330.1| cytochrome o ubiquinol oxidase subunit II [J... 442 e-122 >ref|YP_003775871.1| cytochrome o ubiquinol oxidase subunit II protein [Herbaspirillum seropedicae SmR1] gb|ADJ63963.1| cytochrome o ubiquinol oxidase subunit II protein [Herbaspirillum seropedicae SmR1] Length = 310 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 304/310 (98%), Positives = 307/310 (99%) Query: 1 MVSQILRRGLLLLPALLLAGCNTVVMNPSGDIANQQARLIVISTALMLLIIVPVIILTLL 60 MVSQILRRGLLLLPALLLAGCNTVVMNPSGDIANQQARLI+ISTALMLLIIVPVIILTLL Sbjct: 1 MVSQILRRGLLLLPALLLAGCNTVVMNPSGDIANQQARLIIISTALMLLIIVPVIILTLL 60 Query: 61 FAWRYRKSNTSAPYEPDWDHSTRLELVIWGAPLLIIIALGLLTWITTHTLDPYRPLSRID 120 FAWRYRKSNTSAPYEPDWDHSTRLELVIWGAPLLIIIALGLLTWITTHTLDPYRPLSRID Sbjct: 61 FAWRYRKSNTSAPYEPDWDHSTRLELVIWGAPLLIIIALGLLTWITTHTLDPYRPLSRID 120 Query: 121 AERPLSPQVKPLVVEVVALDWKWLFIYPEQGIATVNELAAPVDVPIQFKITASNVMNSFY 180 AERPLSPQVKPLVVEVVALDWKWLFIYPEQGIATVNELAAPVDVPIQFKITAS+VMNSFY Sbjct: 121 AERPLSPQVKPLVVEVVALDWKWLFIYPEQGIATVNELAAPVDVPIQFKITASSVMNSFY 180 Query: 181 IPALAGQIYAMPSMETKLHAVINKAGEYEGFSANYSGAGFSHMRFKFHGLDQAGFDAWVQ 240 IPALAGQIYAMP METKLHAVINKAGEYEGFSANYSGAGFSHMRFKFHGLDQAGFDAWVQ Sbjct: 181 IPALAGQIYAMPGMETKLHAVINKAGEYEGFSANYSGAGFSHMRFKFHGLDQAGFDAWVQ 240 Query: 241 KAKAGAGKLDRAEYLKLEQPSEREPARLIGSVEPELFHAIVNRCVAPNTVCMDKMMATDL 300 KAKAG+GKLDRAEYLKLEQPSEREPARLIGS EP LFHAIVNRCVAPNTVCMDKMMATDL Sbjct: 241 KAKAGSGKLDRAEYLKLEQPSEREPARLIGSTEPNLFHAIVNRCVAPNTVCMDKMMATDL 300 Query: 301 NVKPGQQKAE 310 NVKPGQQKAE Sbjct: 301 NVKPGQQKAE 310 >ref|YP_004156985.1| ubiquinol oxidase subunit ii [Variovorax paradoxus EPS] gb|ADU38874.1| ubiquinol oxidase, subunit II [Variovorax paradoxus EPS] Length = 341 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 228/304 (75%), Positives = 257/304 (84%), Gaps = 4/304 (1%) Query: 6 LRRGLLLLPALLLAGCNTVVMNPSGDIANQQARLIVISTALMLLIIVPVIILTLLFAWRY 65 LRR L+LLP LLAGCNTV+MNPSGDIANQQ RLIV+ST LML+II+PVI LT+ FAWRY Sbjct: 7 LRRWLVLLPLALLAGCNTVLMNPSGDIANQQGRLIVVSTVLMLIIIIPVIALTIFFAWRY 66 Query: 66 RKSNTSAPYEPDWDHSTRLELVIWGAPLLIIIALGLLTWITTHTLDPYRPLSRIDAERPL 125 R+SN A Y PDWDHST+LEL IW APLLIIIALG +TWI+THTLDPYRPL+R+DA+R + Sbjct: 67 RQSNKEATYSPDWDHSTQLELAIWAAPLLIIIALGAITWISTHTLDPYRPLTRLDAKRQI 126 Query: 126 SPQVKPLVVEVVALDWKWLFIYPEQGIATVNELAAPVDVPIQFKITASNVMNSFYIPALA 185 SP+ KPLVVEVVALDWKWLFIYPEQGIATVNELAAPVDVPI FKITAS+VMNSF+IPALA Sbjct: 127 SPETKPLVVEVVALDWKWLFIYPEQGIATVNELAAPVDVPISFKITASSVMNSFFIPALA 186 Query: 186 GQIYAMPSMETKLHAVINKAGEYEGFSANYSGAGFSHMRFKFHGLDQAGFDAWVQKAKAG 245 GQIYAMP METKLHAVINK GE+EGFSANYSGAGFS MRFKFHGL++ FD WV K KAG Sbjct: 187 GQIYAMPGMETKLHAVINKPGEFEGFSANYSGAGFSGMRFKFHGLNKDDFDQWVAKVKAG 246 Query: 246 A-GKLDRAEYLKLEQPSEREPARLIGSVEPELFHAIVNRCVAPNTVCMDKMMATDLN--- 301 G+L R Y KLE PSEREP R SV+ +L++AI+NRCV N +CM +MMA D + Sbjct: 247 KEGELTREGYTKLEVPSEREPVRHYASVDADLYNAILNRCVDRNKMCMSQMMAIDADGGL 306 Query: 302 VKPG 305 KPG Sbjct: 307 GKPG 310 >ref|YP_002945926.1| ubiquinol oxidase subunit II [Variovorax paradoxus S110] gb|ACS20660.1| ubiquinol oxidase, subunit II [Variovorax paradoxus S110] Length = 342 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 216/290 (74%), Positives = 241/290 (83%), Gaps = 4/290 (1%) Query: 20 GCNTVVMNPSGDIANQQARLIVISTALMLLIIVPVIILTLLFAWRYRKSNTSAPYEPDWD 79 GCNTV+MNPSGDIANQQ RLIV+ST LML+II+PVI LTL FAWRYR+SN A Y PDWD Sbjct: 21 GCNTVLMNPSGDIANQQGRLIVVSTVLMLIIIIPVIALTLFFAWRYRQSNKEADYSPDWD 80 Query: 80 HSTRLELVIWGAPLLIIIALGLLTWITTHTLDPYRPLSRIDAERPLSPQVKPLVVEVVAL 139 HST+LEL IW APLLIIIALG +TWI+THTLDPYRPLSR+DAERP+ + KPLVVEVVAL Sbjct: 81 HSTQLELAIWAAPLLIIIALGAITWISTHTLDPYRPLSRLDAERPIPAEAKPLVVEVVAL 140 Query: 140 DWKWLFIYPEQGIATVNELAAPVDVPIQFKITASNVMNSFYIPALAGQIYAMPSMETKLH 199 DWKWLFIYPEQG ATVNE+AAPVD PI FKITAS+VMNSF+IPALAGQIYAMP METKLH Sbjct: 141 DWKWLFIYPEQGFATVNEMAAPVDRPITFKITASSVMNSFFIPALAGQIYAMPGMETKLH 200 Query: 200 AVINKAGEYEGFSANYSGAGFSHMRFKFHGLDQAGFDAWVQKAKAGA-GKLDRAEYLKLE 258 AVINK GE+EGFSANYSGAGFS MRFKFHGL FD WVQK K+G G+L R +Y KLE Sbjct: 201 AVINKPGEFEGFSANYSGAGFSGMRFKFHGLSNTDFDQWVQKVKSGKDGELTREQYKKLE 260 Query: 259 QPSEREPARLIGSVEPELFHAIVNRCVAPNTVCMDKMMATDLN---VKPG 305 PSEREP R +V P+L+ AI+N CV N +CM +MMA D + KPG Sbjct: 261 APSEREPVRHYAAVAPDLYDAILNLCVDRNKMCMKEMMAIDADGGLGKPG 310 >ref|YP_771075.1| putative ubiquinol oxidase polypeptide II precursor [Rhizobium leguminosarum bv. viciae 3841] emb|CAK02984.1| putative ubiquinol oxidase polypeptide II precursor [Rhizobium leguminosarum bv. viciae 3841] Length = 394 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 212/292 (72%), Positives = 239/292 (81%) Query: 19 AGCNTVVMNPSGDIANQQARLIVISTALMLLIIVPVIILTLLFAWRYRKSNTSAPYEPDW 78 AGCN VVM PSGDIA QQ LIVIST LMLLII+PVI LTL FAWRYR+SNT+A Y P+W Sbjct: 20 AGCNMVVMAPSGDIAAQQRDLIVISTVLMLLIIIPVIFLTLFFAWRYRRSNTAATYAPEW 79 Query: 79 DHSTRLELVIWGAPLLIIIALGLLTWITTHTLDPYRPLSRIDAERPLSPQVKPLVVEVVA 138 HSTRLE+VIW APL IIIALG +TWI+TH LDPYRPL R+DAER + KPL+VEVVA Sbjct: 80 HHSTRLEIVIWAAPLAIIIALGAVTWISTHKLDPYRPLDRLDAERAIPANTKPLIVEVVA 139 Query: 139 LDWKWLFIYPEQGIATVNELAAPVDVPIQFKITASNVMNSFYIPALAGQIYAMPSMETKL 198 LDWKWLF YPE GIATVNELAAPVDVPI FKITAS+VMNSFYIPALAGQIYAMP METKL Sbjct: 140 LDWKWLFFYPELGIATVNELAAPVDVPINFKITASSVMNSFYIPALAGQIYAMPGMETKL 199 Query: 199 HAVINKAGEYEGFSANYSGAGFSHMRFKFHGLDQAGFDAWVQKAKAGAGKLDRAEYLKLE 258 HAVINK GEYEGFSANYSG+GFSHMRFKFHGLDQAGFDAWV + K L+R YLKLE Sbjct: 200 HAVINKQGEYEGFSANYSGSGFSHMRFKFHGLDQAGFDAWVAQVKQQGTMLNRDAYLKLE 259 Query: 259 QPSEREPARLIGSVEPELFHAIVNRCVAPNTVCMDKMMATDLNVKPGQQKAE 310 +PSE+EP R + +L++AI+N C AP +CM++MM D+ G++ AE Sbjct: 260 KPSEKEPVRYYAGADADLYNAILNMCAAPGKMCMNEMMHIDMMGGGGKESAE 311 >ref|YP_001354330.1| cytochrome o ubiquinol oxidase subunit II [Janthinobacterium sp. Marseille] gb|ABR88815.1| cytochrome o ubiquinol oxidase subunit II [Janthinobacterium sp. Marseille] Length = 338 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 224/301 (74%), Positives = 256/301 (85%) Query: 1 MVSQILRRGLLLLPALLLAGCNTVVMNPSGDIANQQARLIVISTALMLLIIVPVIILTLL 60 M S I RRGL+LLP LLAGC+ VV+NPSGDIA QQ +LIV+ST LMLLIIVPVI LT+L Sbjct: 1 MTSLITRRGLMLLPLTLLAGCDWVVLNPSGDIAAQQGQLIVVSTLLMLLIIVPVIALTIL 60 Query: 61 FAWRYRKSNTSAPYEPDWDHSTRLELVIWGAPLLIIIALGLLTWITTHTLDPYRPLSRID 120 FAWRYRKSNT A Y+PDWDHST+LELVIWGAPLLIIIALGL+TWI+TH LDPYRPL R+D Sbjct: 61 FAWRYRKSNTEAKYDPDWDHSTQLELVIWGAPLLIIIALGLITWISTHKLDPYRPLDRLD 120 Query: 121 AERPLSPQVKPLVVEVVALDWKWLFIYPEQGIATVNELAAPVDVPIQFKITASNVMNSFY 180 A RP+S +PL +EVVALDWKWLFIYPEQGIAT+NELA PVDVPI+FKITAS VMNSFY Sbjct: 121 ANRPISAAAEPLTIEVVALDWKWLFIYPEQGIATINELATPVDVPIRFKITASTVMNSFY 180 Query: 181 IPALAGQIYAMPSMETKLHAVINKAGEYEGFSANYSGAGFSHMRFKFHGLDQAGFDAWVQ 240 IPALAGQIYAMP MET+L+AVIN+ G ++GFSAN+SGAGFSHMRFK+HG+D A FD WV+ Sbjct: 181 IPALAGQIYAMPGMETQLNAVINEPGTFDGFSANFSGAGFSHMRFKYHGMDVADFDQWVK 240 Query: 241 KAKAGAGKLDRAEYLKLEQPSEREPARLIGSVEPELFHAIVNRCVAPNTVCMDKMMATDL 300 AK LDRA Y +LEQPSEREP R G V P+L+HA++NRCVA TVCM+K+M D Sbjct: 241 DAKKNGSTLDRAVYTQLEQPSEREPVRHFGKVAPDLYHAVLNRCVAEGTVCMNKIMHEDA 300 Query: 301 N 301 N Sbjct: 301 N 301