BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3121.p (203 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAQ18612.1| hypothetical protein RSMK05502 [Ralstonia solana... 133 1e-29 ref|YP_001165252.1| hypothetical protein RPRSA1_gp03 [Ralstonia ... 124 1e-26 ref|YP_002006667.1| hypothetical protein RALTA_A2673 [Cupriavidu... 114 9e-24 ref|YP_002979962.1| hypothetical protein Rpic12D_5074 [Ralstonia... 111 6e-23 ref|YP_003774340.1| hypothetical protein Hsero_0915 [Herbaspiril... 96 3e-18 >emb|CAQ18612.1| hypothetical protein RSMK05502 [Ralstonia solanacearum MolK2] Length = 200 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 68/169 (40%), Positives = 101/169 (59%), Gaps = 5/169 (2%) Query: 31 GGVVVGEQIEDRRTEADKAKDAPLAKAEVDAAAREKCRDCPPLAGHEIEKHFRERKSWMD 90 G E + R+ EAD AK AP+A+ E A+EKC++CPP G + + F RK+W+D Sbjct: 29 AGEATREAVRKRKEEADNAKTAPIARTEAKTKAKEKCKECPPDKGTQFVRTFPVRKAWVD 88 Query: 91 YQVRITGMRSGPLFLTEWKYDKREFDGFKPAECLLMEAKAGYDQFFSGPGEFEYDFK--K 148 YQ R+ GM SGP ++ EW Y+ +FDGF A+C L EAKAGYDQFF E+ + Sbjct: 89 YQARVGGMPSGPTYIIEWVYNAVKFDGFLSAQCFLKEAKAGYDQFFD---EWRQPLRWWA 145 Query: 149 RIIHDMVGQARLQNIAAQPRPPVKLHWYFMEPWTYAYLKPMFFEISPTI 197 + M+ + Q++AA P+P V+L W++ EP +Y Y + + +P + Sbjct: 146 HNVETMIEEIVRQDLAAIPKPTVRLEWFWQEPVSYRYFERILGAAAPDV 194 >ref|YP_001165252.1| hypothetical protein RPRSA1_gp03 [Ralstonia phage phiRSA1] dbj|BAF52380.1| hypothetical protein [Ralstonia phage phiRSA1] Length = 310 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 97/169 (57%), Gaps = 3/169 (1%) Query: 37 EQIEDRRTEADKAKDAPLAK--AEVDAAAREKCRDCPPLAGHEIEKHFRERKSWMDYQVR 94 + I R+ ADKAK +P+A+ A+ A AR+KC +CPP G + F R W+DYQ R Sbjct: 143 DAIRKRKEAADKAKSSPVAQTDAQTKAQARKKCPECPPDKGVPFTRTFPRRLPWVDYQAR 202 Query: 95 ITGMRSGPLFLTEWKYDKREFDGFKPAECLLMEAKAGYDQFFSGPGEFEYDFKKRIIHDM 154 I GM SGP + EW ++ FDGF CLL EAKAGYDQFF G + + D+ Sbjct: 203 ICGMPSGPNHIIEWMFNAVRFDGFMSGACLLKEAKAGYDQFFDEWGR-PLRWWAYNVEDI 261 Query: 155 VGQARLQNIAAQPRPPVKLHWYFMEPWTYAYLKPMFFEISPTIKVIFQP 203 + + Q++AA P+PPV+L W++ + +Y Y + +P++ + P Sbjct: 262 IAEIVRQDLAASPKPPVRLEWHWQQATSYRYFSRILSAAAPSVPHHYTP 310 >ref|YP_002006667.1| hypothetical protein RALTA_A2673 [Cupriavidus taiwanensis LMG 19424] emb|CAQ70606.1| conserved hypothetical protein [Cupriavidus taiwanensis LMG 19424] Length = 198 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 67/166 (40%), Positives = 89/166 (53%), Gaps = 8/166 (4%) Query: 42 RRTEADKAKDAPLAKAEVDAAAREKCRDCPPLAGHEIEKHFRERKSW----MDYQVRITG 97 R +AD AK P+++AE +EKC+ C P G R W ++YQ RI G Sbjct: 37 RTKDADDAKTTPISRAEPQTKTKEKCKVCTPDMGRPF---VRSTAGWSPISIEYQARIVG 93 Query: 98 MRSGPLFLTEWKYDKREFDGFKPAECLLMEAKAGYDQFFSGPGEFEYDFKKRIIHDMVGQ 157 M GP +TEW++ FDGF ECLL EAKA YDQFF G Y + + + + Sbjct: 94 MPVGPGVITEWQFSGVTFDGFASTECLLKEAKAKYDQFFDEFGGV-YGWWESSAKVIELE 152 Query: 158 ARLQNIAAQPRPPVKLHWYFMEPWTYAYLKPMFFEISPTIKVIFQP 203 A Q A PRPPV+L W+FM+P +Y Y + P I+V+FQP Sbjct: 153 AYRQASTAVPRPPVRLRWHFMQPVSYRYFSQIIQAAFPDIEVVFQP 198 >ref|YP_002979962.1| hypothetical protein Rpic12D_5074 [Ralstonia pickettii 12D] gb|ACS66308.1| conserved hypothetical protein [Ralstonia pickettii 12D] Length = 195 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 73/199 (36%), Positives = 98/199 (49%), Gaps = 12/199 (6%) Query: 12 AQRAVPVIKRWLPRAAGGTGGVVVG----EQIEDRRTEADKAKDAPLAKAEVDAAAREKC 67 A A P+I+ L R G G +Q+ R+ AD AK AP+A+AE EKC Sbjct: 2 AAAAGPLIEAALMRLLVALGVTATGAATIDQLRKRKEAADDAKTAPIARAESQTKTTEKC 61 Query: 68 RDCPPLAGHEIEKHFRERKSWMDYQVRITGMRSGPLFLTEWKYDKREFDGFKPAECLLME 127 ++CPP G + +++ + YQ RITG TEW + +FDGFK AECLL E Sbjct: 62 KECPPDKGSLVSRNWNMSDASRAYQTRITGFAP----YTEWNFGGLDFDGFKSAECLLQE 117 Query: 128 AKAGYDQFFSGPGEFEYDFKKRII---HDMVGQARLQNIAAQPRPPVKLHWYFMEPWTYA 184 AKA YDQFF P + E R+ +V QA+ Q P +L WYFM+P +Y Sbjct: 118 AKALYDQFFD-PEDGEPKIFFRLSGGDRKIVRQAQAQTAVVIASSPARLTWYFMQPLSYR 176 Query: 185 YLKPMFFEISPTIKVIFQP 203 Y F + + QP Sbjct: 177 YFTRRFAREGVSAVTLLQP 195 >ref|YP_003774340.1| hypothetical protein Hsero_0915 [Herbaspirillum seropedicae SmR1] gb|ADJ62432.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 195 Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 58/159 (36%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 46 ADKAKDAPLAKAEVDAAAREKCRDCPPLAGHEIEKHFRERKSWMDYQVRITGMRSGPLFL 105 A++A+ PLA+ +V A EKC+ CPP G + + + +YQ R+TG Sbjct: 42 AEEAESKPLAQVDV-AKQSEKCKKCPPDGGALVSRKWNMSDISREYQARVTGFAPN---- 96 Query: 106 TEWKYDKREFDGFKPAECLLMEAKAGYDQFFSGPGEF-EYDFKKRIIHDMVGQARLQNIA 164 TEW + +FDGF+ AECLL EAKA Y QFF+ + ++ F + QA Q Sbjct: 97 TEWAFSGVDFDGFRSAECLLQEAKARYAQFFNQETDTPKFFFSFTGYRKLRKQAEKQGSV 156 Query: 165 AQPRPPVKLHWYFMEPWTYAYLKPMFFEISPTIKVIFQP 203 PP +L+WYFME + ++K +F I VIF P Sbjct: 157 TAASPPARLNWYFMEKFVADHMKDLFRNDGLPITVIFMP 195