BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3120.p         (118 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAQ18611.1| hypothetical protein RSMK05501 [Ralstonia solana...   101   3e-20
ref|YP_003774341.1| hypothetical protein Hsero_0916 [Herbaspiril...    99   1e-19
ref|YP_002979961.1| hypothetical protein Rpic12D_5073 [Ralstonia...    94   5e-18
gb|AAZ39204.1| hypothetical protein [Janthinobacterium lividum]        93   2e-17
ref|YP_002006668.1| hypothetical protein RALTA_A2674 [Cupriavidu...    79   3e-13

>emb|CAQ18611.1| hypothetical protein RSMK05501 [Ralstonia solanacearum MolK2]
          Length = 125

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/111 (44%), Positives = 69/111 (62%)

Query: 1   MLELTSEQYRQFLHIDTQHFIAAAADQYLAQHQDMRSDPGRNAVIERMRITYERGRSMGF 60
           ML  + EQ+R     D + F+A   DQ+LA   D+ + PGR+A++ERM   ++    +GF
Sbjct: 11  MLTFSEEQWRALQACDGRQFMATVCDQFLANRPDLTAAPGRSAILERMTQAHDFAEQLGF 70

Query: 61  TSTPHLLYMMILEAGAPGLFGDELIRHYLSMPGATPEQRLDDFDAILANEL 111
           TSTPH++++M L A AP L  D +I  YL   GATPEQRLDD  A++   L
Sbjct: 71  TSTPHIVWLMYLVADAPALVTDPVIETYLRKAGATPEQRLDDMAAVMQQTL 121


>ref|YP_003774341.1| hypothetical protein Hsero_0916 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62433.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 119

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/118 (42%), Positives = 76/118 (64%)

Query: 1   MLELTSEQYRQFLHIDTQHFIAAAADQYLAQHQDMRSDPGRNAVIERMRITYERGRSMGF 60
           ML++T EQ+++    D  +F+AA AD++L    D+++ PGR+ +I RMR  Y+ G ++ F
Sbjct: 1   MLKITEEQFQKLQARDADNFVAAVADEFLVDRPDLQAQPGRSEIIARMRAAYDNGLTLSF 60

Query: 61  TSTPHLLYMMILEAGAPGLFGDELIRHYLSMPGATPEQRLDDFDAILANELQRMKEEE 118
           T TP L+YMM + A  PG+F     + YLS PGATPEQRL+D   +L    +  ++EE
Sbjct: 61  TETPSLIYMMYMSADYPGIFEQPGTQQYLSKPGATPEQRLNDMKDVLRYFARTSQQEE 118


>ref|YP_002979961.1| hypothetical protein Rpic12D_5073 [Ralstonia pickettii 12D]
 gb|ACS66307.1| conserved hypothetical protein [Ralstonia pickettii 12D]
          Length = 115

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/111 (40%), Positives = 66/111 (59%)

Query: 1   MLELTSEQYRQFLHIDTQHFIAAAADQYLAQHQDMRSDPGRNAVIERMRITYERGRSMGF 60
           ML L   Q++     D + F+A   D++LA+  D+  + GR A+  RM+  Y+    +GF
Sbjct: 1   MLRLDERQWQALQACDARQFVATVCDRFLAKRPDLAEETGREAIFGRMQAAYDHADRLGF 60

Query: 61  TSTPHLLYMMILEAGAPGLFGDELIRHYLSMPGATPEQRLDDFDAILANEL 111
           TS PH +++M + A AP L  D +I  YL  PGATPEQRLDD + +L  +L
Sbjct: 61  TSVPHTVWLMYMAADAPTLLTDPVIETYLRKPGATPEQRLDDLERVLQKKL 111


>gb|AAZ39204.1| hypothetical protein [Janthinobacterium lividum]
          Length = 104

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/97 (48%), Positives = 62/97 (63%)

Query: 16  DTQHFIAAAADQYLAQHQDMRSDPGRNAVIERMRITYERGRSMGFTSTPHLLYMMILEAG 75
           D   F+ A ADQ+LA+  DM   PGR AVIERM   Y     +GF STPH++++M L A 
Sbjct: 5   DMSDFVIAVADQFLAKRADMAIQPGRAAVIERMLAAYTYAIRIGFRSTPHIVHLMYLAAD 64

Query: 76  APGLFGDELIRHYLSMPGATPEQRLDDFDAILANELQ 112
           APG+  D L+  YL  PGATPEQR D+  A++  +L+
Sbjct: 65  APGIHDDPLVDAYLRKPGATPEQRFDELIAVMDKKLE 101


>ref|YP_002006668.1| hypothetical protein RALTA_A2674 [Cupriavidus taiwanensis LMG
           19424]
 emb|CAQ70607.1| conserved hypothetical protein [Cupriavidus taiwanensis LMG 19424]
          Length = 115

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/112 (36%), Positives = 64/112 (57%)

Query: 1   MLELTSEQYRQFLHIDTQHFIAAAADQYLAQHQDMRSDPGRNAVIERMRITYERGRSMGF 60
           ML L+  Q++     + Q+F+ A  +Q+L   Q++  +PG+  V+ RM   ++    +G 
Sbjct: 1   MLTLSEAQWQALRKTEVQNFVGAVCEQFLTLRQEVLREPGKEEVLGRMLAAHDFAAQIGL 60

Query: 61  TSTPHLLYMMILEAGAPGLFGDELIRHYLSMPGATPEQRLDDFDAILANELQ 112
            STPH++ ++ L A AP L  D  IR YL  P A PEQRLDD  A++   L+
Sbjct: 61  QSTPHIVKLLYLCADAPQLAFDHEIRTYLLKPDANPEQRLDDLCAVVMTLLK 112