BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3119.p         (167 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002979960.1| hypothetical protein Rpic12D_5072 [Ralstonia...   114   4e-24
ref|YP_001165251.1| hypothetical protein RPRSA1_gp02 [Ralstonia ...   114   4e-24
emb|CAQ18610.1| conserved hypothetical protein [Ralstonia solana...   112   1e-23
ref|YP_003774342.1| hypothetical protein Hsero_0917 [Herbaspiril...   111   3e-23
gb|AAZ39205.1| hypothetical protein [Janthinobacterium lividum]       110   6e-23

>ref|YP_002979960.1| hypothetical protein Rpic12D_5072 [Ralstonia pickettii 12D]
 gb|ACS66306.1| conserved hypothetical protein [Ralstonia pickettii 12D]
          Length = 167

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 72/159 (45%), Positives = 93/159 (58%), Gaps = 1/159 (0%)

Query: 9   RIKPLSQPLAGEQLHVLVDGVHFAEMNFSVPLAEQPGATSLFAGTEEESLMEGGPWLLAV 68
           R+  L       +L+ LVDG+ + E      L ++PG  SLF GT +  L   GPWL+ V
Sbjct: 8   RLTQLRSTFPTLRLYALVDGIQYEESR-GERLGDRPGHASLFRGTPDGPLAHAGPWLVDV 66

Query: 69  QRQSYALCRQLIALERSRAAVSWIYAAFDTAALAAHLQARLNLRLPDGRSALLRFWDPRV 128
           +    A+   L  LE+   AV+W+ A  D A LA  LQ  L++RLPDGR ALLRFWDPRV
Sbjct: 67  EEVGDAVLHDLARLEQEAPAVTWLIAEADLAGLAQLLQLHLDVRLPDGRIALLRFWDPRV 126

Query: 129 LATLARRLDEAQRIAFFHSIRQWHFVVDGRPVHIGRDHA 167
           LA+L   LD  QR AFF  I +WH + DG+  +I R HA
Sbjct: 127 LASLVNVLDARQRDAFFAHIHEWHLLRDGQRAYIRRTHA 165


>ref|YP_001165251.1| hypothetical protein RPRSA1_gp02 [Ralstonia phage phiRSA1]
 dbj|BAF52379.1| hypothetical protein [Ralstonia phage phiRSA1]
          Length = 167

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 67/160 (41%), Positives = 90/160 (56%), Gaps = 1/160 (0%)

Query: 8   GRIKPLSQPLAGEQLHVLVDGVHFAEMNFSVPLAEQPGATSLFAGTEEESLMEGGPWLLA 67
            R+  L   +   +L+ LVDG  + ++    P+  +    SLF GT +  L   GPWL+ 
Sbjct: 7   ARLAGLRTRVPALRLYALVDGAQY-QLQIGRPILPRSCMASLFEGTADAPLAHAGPWLVD 65

Query: 68  VQRQSYALCRQLIALERSRAAVSWIYAAFDTAALAAHLQARLNLRLPDGRSALLRFWDPR 127
           V++    L   L  +E    AVSW+ A  D   LA  L+ +L++RLPDGR+ALLRFWDPR
Sbjct: 66  VEQADNELVSDLGRMETWAPAVSWLIAQTDLPGLAELLRQQLDVRLPDGRTALLRFWDPR 125

Query: 128 VLATLARRLDEAQRIAFFHSIRQWHFVVDGRPVHIGRDHA 167
           VL  L   LD  Q  AFF  + +WH + DG  V IGRDHA
Sbjct: 126 VLVRLVEVLDGGQLQAFFAHLYEWHMLRDGERVWIGRDHA 165


>emb|CAQ18610.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
          Length = 168

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 71/147 (48%), Positives = 89/147 (60%), Gaps = 1/147 (0%)

Query: 21  QLHVLVDGVHFAEMNFSVPLAEQPGATSLFAGTEEESLMEGGPWLLAVQRQSYALCRQLI 80
           +L+ LVDGV + E +    L   PG  SLF GT + +L   GPWL+ V+    A+   L 
Sbjct: 21  RLYGLVDGVQY-ENHRGERLTGGPGMASLFDGTADAALAHAGPWLIDVEIAGEAVASDLA 79

Query: 81  ALERSRAAVSWIYAAFDTAALAAHLQARLNLRLPDGRSALLRFWDPRVLATLARRLDEAQ 140
            LER   AVSW+ +  D   LA  LQ +L+ RLPDGR ALLR WDPRVLA+L   L   Q
Sbjct: 80  KLEREAPAVSWLISQADLHGLAQLLQLQLDARLPDGRVALLRLWDPRVLASLVDVLSIRQ 139

Query: 141 RIAFFHSIRQWHFVVDGRPVHIGRDHA 167
           R +FF  I +WH + DGR VH+GR HA
Sbjct: 140 RESFFVHIHEWHLLRDGRRVHVGRTHA 166


>ref|YP_003774342.1| hypothetical protein Hsero_0917 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62434.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 168

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 65/147 (44%), Positives = 82/147 (55%), Gaps = 1/147 (0%)

Query: 21  QLHVLVDGVHFAEMNFSVPLAEQPGATSLFAGTEEESLMEGGPWLLAVQRQSYALCRQLI 80
           +L+ LVDG H+ + +    L E P    LF GT +E L   GPWLL  +   + L     
Sbjct: 20  RLYALVDGFHYHQ-HHEQALEESPSVRGLFIGTVDEHLAPSGPWLLDAESAPFDLVSHAA 78

Query: 81  ALERSRAAVSWIYAAFDTAALAAHLQARLNLRLPDGRSALLRFWDPRVLATLARRLDEAQ 140
            LE   A+VSWI    +  ALA  LQ+R+ + LPDGR ALLR WDPR LA+ AR  DE Q
Sbjct: 79  LLETRVASVSWIITTMELDALAHALQSRMQMELPDGRLALLRLWDPRALASAARDFDETQ 138

Query: 141 RIAFFHSIRQWHFVVDGRPVHIGRDHA 167
           R   F  I +W  + +GR V IGR  A
Sbjct: 139 RRYLFEGITEWLLLREGRRVRIGRHDA 165


>gb|AAZ39205.1| hypothetical protein [Janthinobacterium lividum]
          Length = 168

 Score =  110 bits (275), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 67/159 (42%), Positives = 93/159 (58%), Gaps = 1/159 (0%)

Query: 9   RIKPLSQPLAGEQLHVLVDGVHFAEMNFSVPLAEQPGATSLFAGTEEESLMEGGPWLLAV 68
           R+K L Q  +   L+ LVDGV + E +    + +      LF GT + +L   GPWL+ V
Sbjct: 8   RLKQLQQHHSALCLYALVDGVQY-ETHRQTRMTQDGTRYPLFTGTPDAALAHAGPWLVDV 66

Query: 69  QRQSYALCRQLIALERSRAAVSWIYAAFDTAALAAHLQARLNLRLPDGRSALLRFWDPRV 128
              + +    + ALE+   +V+W++A  D   LA  LQ  L +RLPDGR+ALLRFWDPRV
Sbjct: 67  AGAAPSFLEDVAALEQETPSVTWLFAVHDLGGLAQLLQLHLEIRLPDGRAALLRFWDPRV 126

Query: 129 LATLARRLDEAQRIAFFHSIRQWHFVVDGRPVHIGRDHA 167
           L  LA+ L+ AQR A F  I +WH ++DG+   IGR  A
Sbjct: 127 LVKLAQILEPAQREAMFGHIHEWHLLLDGKRAIIGRHDA 165