BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3118.p         (119 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774343.1| hypothetical protein Hsero_0918 [Herbaspiril...   117   4e-25
ref|ZP_04892926.1| gp29 [Burkholderia pseudomallei Pasteur 52237...    86   2e-15
emb|CCA86136.1| conserved hypothetical protein [Ralstonia syzygi...    86   2e-15
ref|NP_902334.1| hypothetical protein CV_2664 [Chromobacterium v...    86   3e-15
ref|ZP_02361392.1| gp29 [Burkholderia oklahomensis C6786]              84   6e-15

>ref|YP_003774343.1| hypothetical protein Hsero_0918 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62435.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 137

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 71/112 (63%), Positives = 86/112 (76%)

Query: 1   MGRPFIVVGDKTSHGGTVISGDQTFLVHGKAVARVGDLTSCPQCKGTFPITSGAGDMKSM 60
           M RPFI VGDKTSHGGTVISGDQ+FL+HGKAVA +GDLT+CP+CKGTF ITSGA DM + 
Sbjct: 1   MSRPFITVGDKTSHGGTVISGDQSFLIHGKAVASIGDLTTCPRCKGTFAITSGAEDMITN 60

Query: 61  GQAPARDGDRTACGATLIASQGVATHSEEKTAAQAAPSGTAASADGEPVPPA 112
           G+APARDGDRTACGA LIA+Q + TH+ ++     A +   A+   +  P A
Sbjct: 61  GKAPARDGDRTACGAILIATQALTTHAAQQEVGSTAGTAADAANLAKANPAA 112


>ref|ZP_04892926.1| gp29 [Burkholderia pseudomallei Pasteur 52237]
 gb|EDO89764.1| gp29 [Burkholderia pseudomallei Pasteur 52237]
          Length = 215

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/112 (48%), Positives = 69/112 (61%), Gaps = 5/112 (4%)

Query: 1   MGRPFIVVGDKTSHGGTVISGDQTFLVHGKAVARVGDLTSCPQCKGTFPITSGAGDMKSM 60
           MG  FI  GD T+HGG V++G  TF+ +GKA+A +GD+ SCP+C G FPI         +
Sbjct: 36  MGFAFIREGDTTTHGGRVLAGTSTFIAYGKAIALLGDMVSCPRCDGIFPIVRVKQRNMEL 95

Query: 61  GQAP-ARDGDRTACGATLIASQGVATHSEEKTAAQAAPSGTAASADGEPVPP 111
           G+ P A +GD+TACGATLIASQG AT          A SG +A + G  V P
Sbjct: 96  GERPVATEGDKTACGATLIASQGTAT----VMPTAGAFSGASAPSVGGGVIP 143


>emb|CCA86136.1| conserved hypothetical protein [Ralstonia syzygii R24]
          Length = 136

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/104 (51%), Positives = 68/104 (65%), Gaps = 3/104 (2%)

Query: 3   RPFIVVGDKTSHGGTVISGDQTFLVHGKAVARVGDLTSCPQCKGTFPITSGAG---DMKS 59
           +PFI+VGD TSHGG V +GDQ   V G+A+AR GDLT CP+CKG F I  G G   D + 
Sbjct: 5   KPFILVGDYTSHGGKVFTGDQGSTVQGRAMAREGDLTVCPKCKGVFAILRGNGNTFDGRD 64

Query: 60  MGQAPARDGDRTACGATLIASQGVATHSEEKTAAQAAPSGTAAS 103
             +  AR GDRTACGA L+ SQ + T S++ +A+ A P   A S
Sbjct: 65  GNKVYARHGDRTACGAQLLGSQWLTTASDQASASPAEPLTRAES 108


>ref|NP_902334.1| hypothetical protein CV_2664 [Chromobacterium violaceum ATCC 12472]
 gb|AAQ60334.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 198

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/101 (49%), Positives = 64/101 (63%)

Query: 1   MGRPFIVVGDKTSHGGTVISGDQTFLVHGKAVARVGDLTSCPQCKGTFPITSGAGDMKSM 60
           M +P I +GDKT HGGTV+    T ++ GK  A VG   SCP+CKGTF I  GA +   M
Sbjct: 14  MSKPIIRLGDKTDHGGTVLEAFPTLVIFGKPAAGVGHKVSCPKCKGTFVIVEGAANTSFM 73

Query: 61  GQAPARDGDRTACGATLIASQGVATHSEEKTAAQAAPSGTA 101
           G+  A +G +T+CGATLIASQG +T + +  AA A  S  A
Sbjct: 74  GKNVAIEGMKTSCGATLIASQGQSTINVDSGAAAAVTSSPA 114


>ref|ZP_02361392.1| gp29 [Burkholderia oklahomensis C6786]
          Length = 182

 Score = 84.3 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 56/113 (49%), Positives = 72/113 (63%), Gaps = 4/113 (3%)

Query: 1   MGRPFIVVGDKTSHGGTVISGDQTFLVHGKAVARVGDLTSCPQCKGTFPITSGAGDMK-S 59
           MG  FI  GD T+HGG V+  +    VHGKA+A +GD+ +CP+C G FPI S   ++  +
Sbjct: 1   MGFAFICEGDTTTHGGRVVGCNTANTVHGKAIALLGDMVTCPRCGGIFPIVSVKRELNMT 60

Query: 60  MGQAP-ARDGDRTACGATLIASQGVATHSEEKTAAQAAPSGTAASADGEPVPP 111
            G  P A DGD+TACGATLIASQGVAT +   TA Q +P G   S   +P+ P
Sbjct: 61  FGDRPIATDGDKTACGATLIASQGVATVA--PTAGQGSPVGGGKSVIPQPIVP 111