BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3113.p (191 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775621.1| transmembrane protein [Herbaspirillum serope... 303 6e-81 ref|YP_004753425.1| putative transmembrane protein [Collimonas f... 177 5e-43 ref|YP_842050.1| hypothetical protein H16_B2538 [Ralstonia eutro... 155 2e-36 ref|YP_004682622.1| hypothetical protein CNE_2c24450 [Cupriavidu... 154 6e-36 ref|YP_002008897.1| hypothetical protein RALTA_B2268 [Cupriavidu... 152 3e-35 >ref|YP_003775621.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63713.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 195 Score = 303 bits (777), Expect = 6e-81, Method: Composition-based stats. Identities = 167/191 (87%), Positives = 176/191 (92%), Gaps = 1/191 (0%) Query: 1 MKRVPLPAAVLTLSALALPLMPAEAADTGYNVWTNEYTVSRQQLQTAIAPQFPRKMRYMD 60 MKR P A L LS +AL +AAD+GYN+WTNEYTVSRQQLQ+AIAPQFPRK+RYMD Sbjct: 6 MKRALFPVA-LCLSGVALIPALGQAADSGYNIWTNEYTVSRQQLQSAIAPQFPRKLRYMD 64 Query: 61 IFDVTFSNPRLGMLPSENRMNTVVDAQIANPLLLQRPVNAVLTLSSAFKYDPATRSLRLD 120 IFDVT SNPRLGMLP++NRMNTVVDAQIANPLLLQRPVNAVLTLSSAFKYDPATRSLRLD Sbjct: 65 IFDVTLSNPRLGMLPADNRMNTVVDAQIANPLLLQRPVNAVLTLSSAFKYDPATRSLRLD 124 Query: 121 APKVDKVDSTDLPPQYAQQLTTLGNAAADQFLRDYALYTFKPEQLQMNGKTFEPGKITVE 180 APKVDKVDS+DLPPQYAQQLT LGNAAADQFLRDYALYTFKPEQLQMNGK FEPGKITVE Sbjct: 125 APKVDKVDSSDLPPQYAQQLTALGNAAADQFLRDYALYTFKPEQLQMNGKRFEPGKITVE 184 Query: 181 QDAVKVEIKEK 191 QDAVKVEIKEK Sbjct: 185 QDAVKVEIKEK 195 >ref|YP_004753425.1| putative transmembrane protein [Collimonas fungivorans Ter331] gb|AEK62602.1| putative transmembrane protein [Collimonas fungivorans Ter331] Length = 207 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 83/162 (51%), Positives = 119/162 (73%) Query: 29 GYNVWTNEYTVSRQQLQTAIAPQFPRKMRYMDIFDVTFSNPRLGMLPSENRMNTVVDAQI 88 GYN+W+NEYT S+QQLQTAI +FP+++RY ++F+V NP L + P++NR+ T V+ + Sbjct: 45 GYNIWSNEYTFSQQQLQTAIESKFPQQLRYAEVFNVGLKNPHLTLNPAQNRVLTQVNVSV 104 Query: 89 ANPLLLQRPVNAVLTLSSAFKYDPATRSLRLDAPKVDKVDSTDLPPQYAQQLTTLGNAAA 148 +PLLL +N +TLSS KYD ATR+++LD P VD +D +++P QY QL+ +G A Sbjct: 105 VSPLLLAGTLNGAITLSSGLKYDRATRAVQLDNPTVDNIDFSNVPAQYKPQLSQIGAVVA 164 Query: 149 DQFLRDYALYTFKPEQLQMNGKTFEPGKITVEQDAVKVEIKE 190 Q L +Y +YTF+ E+L++NGKTFEPG ITV+QD + VEI E Sbjct: 165 QQVLNNYPIYTFRSEELRLNGKTFEPGAITVQQDGIAVEINE 206 >ref|YP_842050.1| hypothetical protein H16_B2538 [Ralstonia eutropha H16] emb|CAJ97320.1| conserved hypothetical transmembrane protein [Ralstonia eutropha H16] Length = 184 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 82/181 (45%), Positives = 120/181 (66%), Gaps = 1/181 (0%) Query: 11 LTLSALALPLMPAEAADTGYNVWTNEYTVSRQQLQTAIAPQFPRKMRYMDIFDVTFSNPR 70 L+L A + A +A GYN+WT EY++SRQ+LQTA+ +FP +RY ++ V S+PR Sbjct: 5 LSLLIAAACVAGASSALAGYNIWTGEYSLSRQELQTALDQRFPATLRYAEVVSVQLSHPR 64 Query: 71 LGMLPSENRMNTVVDAQIANPLLLQRPVNAVLTLSSAFKYDPATRSLRLDAPKVDKVDST 130 L + + NR+ T VDA++ N LL PV+ L L+S +YDPA R++ LD P V +V+ Sbjct: 65 LVLDEANNRVTTHVDARLTNALLPSPPVDGKLALNSGVRYDPAKRAVLLDNPTVQQVEVA 124 Query: 131 DLPPQYAQQLTTLGNAAADQFLRDYALYTFKPEQLQMNGKTFEPGKITVEQDAVKVEIKE 190 + QY +QL +G A Q L+DY +YTFKPE+L++ GK EPG ITV +D V+VE+K+ Sbjct: 125 GM-GQYREQLNAIGAVVAQQLLKDYPVYTFKPEELRVGGKDVEPGAITVGKDEVRVEVKQ 183 Query: 191 K 191 + Sbjct: 184 R 184 >ref|YP_004682622.1| hypothetical protein CNE_2c24450 [Cupriavidus necator N-1] gb|AEI81390.1| hypothetical membrane protein [Cupriavidus necator N-1] Length = 184 Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 79/169 (46%), Positives = 115/169 (68%), Gaps = 1/169 (0%) Query: 23 AEAADTGYNVWTNEYTVSRQQLQTAIAPQFPRKMRYMDIFDVTFSNPRLGMLPSENRMNT 82 A +A GYN+WT EY++SRQ+LQTA+ +FP +RY ++ V S+PRL + + NR+ T Sbjct: 17 ASSALAGYNIWTGEYSLSRQELQTALDQRFPATLRYAEVVSVQLSHPRLVLDEANNRVTT 76 Query: 83 VVDAQIANPLLLQRPVNAVLTLSSAFKYDPATRSLRLDAPKVDKVDSTDLPPQYAQQLTT 142 VDA++ N LL PV+ L L+S +YDPA R++ LD P V +V+ + QY +QL Sbjct: 77 HVDARLTNALLPSPPVDGKLALNSGVRYDPAKRAVLLDNPTVQQVEVAGM-GQYREQLNA 135 Query: 143 LGNAAADQFLRDYALYTFKPEQLQMNGKTFEPGKITVEQDAVKVEIKEK 191 +G A Q L+DY +YTFKPE+L++ GK EPG ITV +D V+VE+K++ Sbjct: 136 IGAVVAQQLLKDYPVYTFKPEELRVGGKDVEPGAITVGKDEVRVEVKQR 184 >ref|YP_002008897.1| hypothetical protein RALTA_B2268 [Cupriavidus taiwanensis LMG 19424] emb|CAQ72845.1| conserved hypothetical protein; putative exported protein [Cupriavidus taiwanensis LMG 19424] Length = 189 Score = 152 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 77/163 (47%), Positives = 111/163 (68%), Gaps = 1/163 (0%) Query: 29 GYNVWTNEYTVSRQQLQTAIAPQFPRKMRYMDIFDVTFSNPRLGMLPSENRMNTVVDAQI 88 GYNVWT EY+++RQ+LQT + +FP +RY ++ V S+PRL + + NR+ T VDA++ Sbjct: 28 GYNVWTGEYSLTRQELQTELDKRFPATLRYAEVVSVQLSHPRLVLDEASNRLTTHVDARL 87 Query: 89 ANPLLLQRPVNAVLTLSSAFKYDPATRSLRLDAPKVDKVDSTDLPPQYAQQLTTLGNAAA 148 N LL PVN L L+S +YDPA R++ LD P V +VD T + Y +QL +G A Sbjct: 88 TNALLPSPPVNGKLALNSGIRYDPARRAVLLDNPTVQQVDVTGM-ALYREQLNAIGAVVA 146 Query: 149 DQFLRDYALYTFKPEQLQMNGKTFEPGKITVEQDAVKVEIKEK 191 Q L+DY +YTFKPE+L++ G+ EPG ITV +D V+VE+K++ Sbjct: 147 QQLLKDYPIYTFKPEELRVGGREVEPGAITVGKDEVRVEVKQR 189