BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3112.p (336 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775620.1| microcin C7 resistance protein [Herbaspirill... 559 e-157 ref|YP_001353692.1| L,D-carboxypeptidase A [Janthinobacterium sp... 320 3e-85 ref|YP_001099683.1| L,D-carboxypeptidase A [Herminiimonas arseni... 314 1e-83 ref|YP_004752031.1| L, D-carboxypeptidase A [Collimonas fungivor... 308 6e-82 ref|ZP_08273231.1| Muramoyltetrapeptide carboxypeptidase [Oxalob... 298 1e-78 >ref|YP_003775620.1| microcin C7 resistance protein [Herbaspirillum seropedicae SmR1] gb|ADJ63712.1| microcin C7 resistance protein [Herbaspirillum seropedicae SmR1] Length = 333 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 280/332 (84%), Positives = 298/332 (89%) Query: 5 TAGRELLEGLVPPGTGVAIVAPCGHAGLDPAGVQRGVALLESLGCRVRNFYDHARRYQRF 64 TAGRELL+GLVPPGTGVAIVAPCGHAG+DP V RGVALLESLGCRVRNFYDH +RYQRF Sbjct: 2 TAGRELLDGLVPPGTGVAIVAPCGHAGVDPERVPRGVALLESLGCRVRNFYDHQQRYQRF 61 Query: 65 GATDEQRAAQLMEAAAAPEIDVIMGLRGSYGMSRILPALDIPALAASGKLLVGYSDFTAL 124 GATDEQRAAQLMEAAA P+++VI+GLRGSYGMSRILP LDIPALAASGKLLVGYSDFTAL Sbjct: 62 GATDEQRAAQLMEAAADPDVEVILGLRGSYGMSRILPTLDIPALAASGKLLVGYSDFTAL 121 Query: 125 QCCLLAQSGYAGFQGPMLSGDFGAESPNWAALANLWRTLTSAQVVVHNYDGPAGADRVPN 184 QC LLA G GFQGPML GDFGAE+P+W ALA W+TLTS QV V NY GP G DR P Sbjct: 122 QCALLAHGGQGGFQGPMLCGDFGAETPDWQALACFWKTLTSPQVTVRNYSGPDGMDRAPI 181 Query: 185 GDRLTDPLSPVLQCAGKLWGGNLAMMAHMVGHPQFPAIDGGILFLEDVNEHPFRVERMIL 244 GDR TDP SPV++C GKLWGGNLAMMAHMVGHPQF ++GGILFLEDVNEHPFRVERMIL Sbjct: 182 GDRRTDPASPVVRCEGKLWGGNLAMMAHMVGHPQFAPVEGGILFLEDVNEHPFRVERMIL 241 Query: 245 QLEQAGVLARQKAILLGDFSAYRLAEIDNGYDFTEMLAFLRQRIATPIVTGLPFGHVRDL 304 QL QAGVLARQ+AILLGDFS YRLAEIDNGYDFT+MLAFLRQ IATPIVTGLPFGHVRDL Sbjct: 242 QLHQAGVLARQRAILLGDFSGYRLAEIDNGYDFTQMLAFLRQHIATPIVTGLPFGHVRDL 301 Query: 305 VTLPLGAHAALDARGAAGFTLTLSDYPTLARR 336 VTLP+GAHA LDA+GA GFTLTLSDYPTL RR Sbjct: 302 VTLPIGAHAVLDAQGADGFTLTLSDYPTLTRR 333 >ref|YP_001353692.1| L,D-carboxypeptidase A [Janthinobacterium sp. Marseille] gb|ABR89636.1| muramoyltetrapeptide carboxypeptidase [Janthinobacterium sp. Marseille] Length = 320 Score = 320 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 169/314 (53%), Positives = 217/314 (69%), Gaps = 18/314 (5%) Query: 21 VAIVAPCGHAGLDPAGVQRGVALLESLGCRVRNFYDHARRYQRFGATDEQRAAQLMEAAA 80 + +VA G+A ++ V+RG+A L++ GC V+NF D +R++QRFGATD++R AQL AA Sbjct: 24 IGLVAASGYA-VNAEAVERGIANLQAQGCVVKNFSDASRKFQRFGATDDERIAQLYAAAQ 82 Query: 81 APEIDVIMGLRGSYGMSRILPALDIPALAASGKLLVGYSDFTALQCCLLAQSGYAGFQGP 140 PE+D++M LRG YG++R+LP LD LAAS KL VG+SDFTALQ LLAQ+G + F GP Sbjct: 83 DPEVDIVMALRGGYGLTRLLPELDFKLLAASKKLFVGHSDFTALQMGLLAQAGGSSFSGP 142 Query: 141 MLSGDFGAESPNWAALANLWRTLTSAQVVVHNYDGPAGADRVPNGDRLTDPLSPVLQCAG 200 ML DF + + L N WR +T P V D +P L+ +G Sbjct: 143 MLCDDFVRDELSAYTLNNFWRCITQ----------PEHTLTVQAKD------NPQLEASG 186 Query: 201 KLWGGNLAMMAHMVGHPQFPAIDGGILFLEDVNEHPFRVERMILQLEQAGVLARQKAILL 260 LWGGNLAM+AH+VG P P + GGILF+EDVNEHP+RVERM+LQL AGVL RQKA+LL Sbjct: 187 TLWGGNLAMLAHLVGSPYLPQVPGGILFVEDVNEHPYRVERMVLQLLHAGVLDRQKALLL 246 Query: 261 GDFSAYRLAEIDNGYDFTEMLAFLRQRIATPIVTGLPFGHVRDLVTLPLGAHAALDARGA 320 GDFSAYRL + DNGYDF +M+A+LR + P++TGLPFGH RD TL GA A L++R A Sbjct: 247 GDFSAYRLTDYDNGYDFEQMVAYLRSHLPVPVLTGLPFGHGRDKATLVAGALATLNSR-A 305 Query: 321 AGFTLTLSDYPTLA 334 GF+LT+ YP LA Sbjct: 306 DGFSLTMQGYPFLA 319 >ref|YP_001099683.1| L,D-carboxypeptidase A [Herminiimonas arsenicoxydans] emb|CAL61556.1| Muramoyltetrapeptide carboxypeptidase (LD-carboxypeptidase A) [Herminiimonas arsenicoxydans] Length = 316 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 169/317 (53%), Positives = 213/317 (67%), Gaps = 20/317 (6%) Query: 18 GTGVAIVAPCGHAGLDPAGVQRGVALLESLGCRVRNFYDHARRYQRFGATDEQRAAQLME 77 G VAIV+P G+A + P V+RG+A L++ GCRVRNF D A R+QRFGA D+ R AQL Sbjct: 16 GPLVAIVSPSGYASI-PGAVERGIATLQAQGCRVRNFTDSASRFQRFGAGDDARIAQLYA 74 Query: 78 AAAAPEIDVIMGLRGSYGMSRILPALDIPALAASGKLLVGYSDFTALQCCLLAQSGYAGF 137 AA P++D+++ LRG YG++R+LP LD LAASGKL VG+SDFTALQ LLAQ+G F Sbjct: 75 AAQDPDVDIVLALRGGYGLTRLLPELDFSQLAASGKLFVGHSDFTALQMGLLAQTGAMSF 134 Query: 138 QGPMLSGDFGAESPNWAALANLWRTLTS-AQVVVHNYDGPAGADRVPNGDRLTDPLSPVL 196 GPML DF + + L N W+ LT A + + +P L Sbjct: 135 SGPMLCDDFVRDELSAYTLNNFWQCLTQPAHTITAQTEN-----------------NPQL 177 Query: 197 QCAGKLWGGNLAMMAHMVGHPQFPAIDGGILFLEDVNEHPFRVERMILQLEQAGVLARQK 256 Q G LWGGNLAM+ H+VG P P IDGGIL +EDVNEHP+RVERM+LQL AGVL Q+ Sbjct: 178 QVKGTLWGGNLAMLTHLVGSPWLPKIDGGILCVEDVNEHPYRVERMMLQLLHAGVLDGQQ 237 Query: 257 AILLGDFSAYRLAEIDNGYDFTEMLAFLRQRIATPIVTGLPFGHVRDLVTLPLGAHAALD 316 A+LLGDFS YRL++ DNGYDF +MLA+LR + P++TGLPFGH RD TL LG+ A L Sbjct: 238 AVLLGDFSGYRLSDYDNGYDFAQMLAYLRAHLPVPVLTGLPFGHGRDKATLVLGSRAELV 297 Query: 317 ARGAAGFTLTLSDYPTL 333 A + F+LT+S Y +L Sbjct: 298 A-DSVSFSLTMSGYRSL 313 >ref|YP_004752031.1| L, D-carboxypeptidase A [Collimonas fungivorans Ter331] gb|AEK61208.1| L, D-carboxypeptidase A (in murein recycling) [Collimonas fungivorans Ter331] Length = 311 Score = 308 bits (790), Expect = 6e-82, Method: Composition-based stats. Identities = 164/326 (50%), Positives = 214/326 (65%), Gaps = 18/326 (5%) Query: 9 ELLEGLVPPGTGVAIVAPCGHAGLDPAGVQRGVALLESLGCRVRNFYDHARRYQRFGATD 68 E ++ L GVA++AP G+A D A + RG+ L+S GC V ++YD A +YQRFG TD Sbjct: 3 EPVQALSKKSIGVALIAPGGYAS-DEAALARGILALQSQGCVVYDYYDPAAKYQRFGGTD 61 Query: 69 EQRAAQLMEAAAAPEIDVIMGLRGSYGMSRILPALDIPALAASGKLLVGYSDFTALQCCL 128 R Q+ EA P++ +++ +RGSYGMSR+LP LD LAAS K+ VG+SD TAL L Sbjct: 62 AARVGQIYEAIDNPQVQIVLAIRGSYGMSRLLPMLDFERLAASKKIFVGHSDVTALHLAL 121 Query: 129 LAQSGYAGFQGPMLSGDFGAESPNWAALANLWRTLTSAQVVVHNYDGPAGADRVPNGDRL 188 LAQ+G F GPML DFG + +++ W L + V+ ++ Sbjct: 122 LAQTGAPSFAGPMLCSDFGEAELSELTMSHFWECLRQPEQVL----------------QV 165 Query: 189 TDPLSPVLQCAGKLWGGNLAMMAHMVGHPQFPAIDGGILFLEDVNEHPFRVERMILQLEQ 248 + +P + +G LWGGNLAM+ H+VG P P +DGGILFLED+ EHP+R+ERM+LQL+ Sbjct: 166 SAAGNPTVNASGTLWGGNLAMLNHLVGTPYLPQVDGGILFLEDIGEHPYRIERMMLQLQY 225 Query: 249 AGVLARQKAILLGDFSAYRLAEIDNGYDFTEMLAFLRQRIATPIVTGLPFGHVRDLVTLP 308 AG+L RQ+AI+LGDFS YRLAE DNGYDF MLA+LR IA PI+TGLPFGH+RD VTLP Sbjct: 226 AGILERQQAIVLGDFSNYRLAEHDNGYDFDAMLAYLRAHIAAPILTGLPFGHIRDKVTLP 285 Query: 309 LGAHAALDARGAAGFTLTLSDYPTLA 334 +GA A L A GF LT + TLA Sbjct: 286 VGAQAQL-LSDANGFQLTTQNPLTLA 310 >ref|ZP_08273231.1| Muramoyltetrapeptide carboxypeptidase [Oxalobacteraceae bacterium IMCC9480] gb|EGF33299.1| Muramoyltetrapeptide carboxypeptidase [Oxalobacteraceae bacterium IMCC9480] Length = 304 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 164/317 (51%), Positives = 211/317 (66%), Gaps = 18/317 (5%) Query: 20 GVAIVAPCGHAGLDPAGVQRGVALLESLGCRVRNFYDHARRYQRFGATDEQRAAQLMEAA 79 G+A+VAP G+A D V R +A L++ G RV+ + +++RFGA+D R A L AA Sbjct: 6 GIALVAPSGYA-TDTGAVDRAIARLQAAGYRVKRHFAAEEKHERFGASDALRVAHLHAAA 64 Query: 80 AAPEIDVIMGLRGSYGMSRILPALDIPALAASGKLLVGYSDFTALQCCLLAQSGYAGFQG 139 + + D+++ LRG YG+SRILP LD P LAASGKL +G+SDFTA LLAQ+G F G Sbjct: 65 SDHDADIVLALRGGYGLSRILPQLDWPLLAASGKLFLGHSDFTAFHLGLLAQTGAISFAG 124 Query: 140 PMLSGDFGAESPNWAALANLWRTLTSAQVVVHNYDGPAGADRVPNGDRLTDPLSPVLQCA 199 PML DF + A+ W+ LTS + VV R+ P SP + + Sbjct: 125 PMLCDDFTRAPASDFTHAHCWQCLTSERTVV----------------RVEQPDSPPVDAS 168 Query: 200 GKLWGGNLAMMAHMVGHPQFPAIDGGILFLEDVNEHPFRVERMILQLEQAGVLARQKAIL 259 G LWGGNLAM+AH+VG P P I GGILFLED+NEHPFRVERM+LQL AGVLA+Q AI+ Sbjct: 169 GILWGGNLAMVAHLVGSPYLPHITGGILFLEDINEHPFRVERMLLQLLHAGVLAQQSAIV 228 Query: 260 LGDFSAYRLAEIDNGYDFTEMLAFLRQRIATPIVTGLPFGHVRDLVTLPLGAHAALDARG 319 LGDFS Y+L+EIDNG+ F ML LR + P++TGLPFGH+ D VTLP+GA A L++ Sbjct: 229 LGDFSGYKLSEIDNGFCFESMLERLRATLPVPVLTGLPFGHIVDKVTLPVGAPATLNS-D 287 Query: 320 AAGFTLTLSDYPTLARR 336 A+G+TLT+S YP L R Sbjct: 288 ASGWTLTVSGYPHLLAR 304