BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3109.p         (54 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775617.1| organic radical activating enzyme protein [H...    74   8e-12
emb|CAL61551.2| Conserved hypothetical protein [Herminiimonas ar...    56   1e-06
ref|YP_001099678.1| hypothetical protein HEAR1379 [Herminiimonas...    56   2e-06

>ref|YP_003775617.1| organic radical activating enzyme protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ63709.1| organic radical activating enzyme protein [Herbaspirillum
           seropedicae SmR1]
          Length = 229

 Score = 73.9 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/40 (90%), Positives = 38/40 (95%), Gaps = 1/40 (2%)

Query: 16  LLQ-IDGLRPAANTRLAIEMVKNNPKWKLSIQTHKLLNIP 54
           LLQ +DGL+ AANTRLAIEMVKNNPKWKLSIQTHKLLNIP
Sbjct: 190 LLQPMDGLQAAANTRLAIEMVKNNPKWKLSIQTHKLLNIP 229


>emb|CAL61551.2| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 211

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/36 (69%), Positives = 28/36 (77%)

Query: 19  IDGLRPAANTRLAIEMVKNNPKWKLSIQTHKLLNIP 54
           +DG     NTRLAIE+ K NPKWKLS+QTHKLL IP
Sbjct: 176 MDGPLAEQNTRLAIEICKKNPKWKLSLQTHKLLQIP 211


>ref|YP_001099678.1| hypothetical protein HEAR1379 [Herminiimonas arsenicoxydans]
          Length = 248

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/36 (69%), Positives = 28/36 (77%)

Query: 19  IDGLRPAANTRLAIEMVKNNPKWKLSIQTHKLLNIP 54
           +DG     NTRLAIE+ K NPKWKLS+QTHKLL IP
Sbjct: 213 MDGPLAEQNTRLAIEICKKNPKWKLSLQTHKLLQIP 248