BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3107.p (564 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774878.1| dihydrolipoamide acetyltransferase component... 805 0.0 emb|CBJ37800.1| Dihydrolipoyllysine-residue succinyltransferase,... 557 e-156 ref|YP_004156024.1| pyruvate dehydrogenase complex dihydrolipoam... 554 e-155 ref|YP_004235229.1| pyruvate dehydrogenase complex dihydrolipoam... 553 e-155 ref|YP_002944064.1| pyruvate dehydrogenase complex dihydrolipoam... 551 e-154 >ref|YP_003774878.1| dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [Herbaspirillum seropedicae SmR1] gb|ADJ62970.1| dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (E2) protein [Herbaspirillum seropedicae SmR1] Length = 554 Score = 805 bits (2079), Expect = 0.0, Method: Composition-based stats. Identities = 526/554 (94%), Positives = 536/554 (96%), Gaps = 3/554 (0%) Query: 14 MSQVEVKVPDIGDFKEVEVIEVMVKVGDTIKVEQSLLTVESDKASMEIPSSQAGVVKEIK 73 MSQVEVKVPDIGDFKEVEVIEVMVKVGDTIKV+QSL+TVESDKASMEIPSSQAGVVKEIK Sbjct: 1 MSQVEVKVPDIGDFKEVEVIEVMVKVGDTIKVDQSLITVESDKASMEIPSSQAGVVKEIK 60 Query: 74 VKVGDKVAEGSLLVIVEGEGAAAAPAAAPQAAAAASAAAQASAPAPAPVAAPAAAAGGTV 133 VKVGDKVAEGSLLVIVEGEGAAAAPAAAPQAAAAA AAAQA+APAPAP AAPAAAAGGTV Sbjct: 61 VKVGDKVAEGSLLVIVEGEGAAAAPAAAPQAAAAAPAAAQAAAPAPAPAAAPAAAAGGTV 120 Query: 134 EIEVPDIGDFKEVEVIEVMVKVGDTVKAEQSLLTVESDKASMEIPSSHAGVIKELKIKLG 193 EIEVPDIGDFKEVEVIEVMVKVGDTVKAEQSLLTVESDKASMEIPSSHAGVIKELK+KLG Sbjct: 121 EIEVPDIGDFKEVEVIEVMVKVGDTVKAEQSLLTVESDKASMEIPSSHAGVIKELKVKLG 180 Query: 194 DKVAKGSIIATIEAAGGAPAAASAAAPAAAPAAAPAPAAAPAPAAAAVPAIATA---SAT 250 DKV+KGSIIATIEAAGGAPAAA AAAPAAAPAAA APA A APA AA A+ SAT Sbjct: 181 DKVSKGSIIATIEAAGGAPAAAPAAAPAAAPAAAAAPAPASAPAPAAAAAVPAIATASAT 240 Query: 251 STGGKAHASPSVRKFARELGVDLSRVPATGPKGRILQLDVQNFVKGVMAGSTSVAAAAPA 310 STGGKAHASPSVRKFARELGVDLSRVPATGPKGRILQLDVQNFVKGVMAGSTSVAA+APA Sbjct: 241 STGGKAHASPSVRKFARELGVDLSRVPATGPKGRILQLDVQNFVKGVMAGSTSVAASAPA 300 Query: 311 TNGSGSGMNLLPWPSLDFSKFGTTELQPLSRIKKISGPNLHRNWVMIPHVTQFDEADVTE 370 TNGSG+GMNLLPWPSLDFSKFG TELQPLSRIKKISGPNLHRNWVMIPHVTQFDEADVTE Sbjct: 301 TNGSGAGMNLLPWPSLDFSKFGETELQPLSRIKKISGPNLHRNWVMIPHVTQFDEADVTE 360 Query: 371 LEEFRKTSNDAFAKAKSPVKLTMLAFVIKASVSALKKFPAFNASLDEKGENLILKKYYNI 430 LEEFRKTSNDAFAKAKSPVKLTMLAFVIKASVSALKKFPAFN+SLD KGENLILKK+YNI Sbjct: 361 LEEFRKTSNDAFAKAKSPVKLTMLAFVIKASVSALKKFPAFNSSLDAKGENLILKKFYNI 420 Query: 431 GFAADTPNGLVVPVIKNADQKSIGQIATEMGELSAQARDGKLKPADMQGATFTISSLGGI 490 GFAADTPNGLVVPVIKNADQKSIGQIA EMGELSAQARDGKLKPADMQGATFTISSLGGI Sbjct: 421 GFAADTPNGLVVPVIKNADQKSIGQIAIEMGELSAQARDGKLKPADMQGATFTISSLGGI 480 Query: 491 GGTAFTPIINAPEVAILGLSKSITKPVWDGKQFVPRLMLPTSLSYDHRVIDGAMGARFSA 550 GGTAFTPIINAPEVAILGLSKSITKPVWDGKQFVPRLMLPTSLSYDHRVIDGAMGARFSA Sbjct: 481 GGTAFTPIINAPEVAILGLSKSITKPVWDGKQFVPRLMLPTSLSYDHRVIDGAMGARFSA 540 Query: 551 YLADVLGDLRKSLL 564 YLADVLGDLRKSLL Sbjct: 541 YLADVLGDLRKSLL 554 >emb|CBJ37800.1| Dihydrolipoyllysine-residue succinyltransferase, component of pyruvate dehydrogenase complex (E2) [Ralstonia solanacearum CMR15] Length = 559 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 355/563 (63%), Positives = 425/563 (75%), Gaps = 16/563 (2%) Query: 14 MSQV-EVKVPDIGDFKEVEVIEVMVKVGDTIKVEQSLLTVESDKASMEIPSSQAGVVKEI 72 MSQV E+KVPDIGD+K+V VIE+ VK GDT+ E SL+T+ESDKA+M++PS ++GVVKE+ Sbjct: 1 MSQVVEIKVPDIGDYKDVPVIELHVKAGDTVSAEDSLVTLESDKATMDVPSPKSGVVKEV 60 Query: 73 KVKVGDKVAEGSLLVIVEGEGAAAAPAAAPQAAAAASAAAQASAPAPAPVAAPAAA---- 128 K+KVGD V+EGSL++++E +GAAAAPA A QAA A +AAA A APA +A A Sbjct: 61 KIKVGDAVSEGSLVLLLEEQGAAAAPAPAAQAAPAPAAAAPAPAPAAQALAPATATAAAA 120 Query: 129 -AGGTVEIEVPDIGDFKEVEVIEVMVKVGDTVKAEQSLLTVESDKASMEIPSSHAGVIKE 187 GGT+E++VPDIGD+ +V VIE+ VKVGD V+AEQSL+T+ESDKA+M++PS AG +K+ Sbjct: 121 AGGGTIEVKVPDIGDYSDVPVIEINVKVGDKVEAEQSLITLESDKATMDVPSPAAGTVKD 180 Query: 188 LKIKLGDKVAKGSIIATIEAAGGAPAAASAAAPAAAPAAAPAPAAAPAPAAAAVPAIA-- 245 +++K+GD V++G++I +E AGG AAA A APA APAAA A A AA A Sbjct: 181 IRVKVGDAVSQGTLIVVLEGAGGTAAAAPAQAPAPAPAAAAPSPAPAAAPVAAPAAAPAT 240 Query: 246 -TASATSTGGKA-HASPSVRKFARELGVDLSRVPATGPKGRILQLDVQNFVKGVMAGSTS 303 TA T GKA HASPSVRK+ARELGVD++ V TGPK RI Q DVQ +VKGVM G + Sbjct: 241 YTADTVGTIGKAAHASPSVRKYARELGVDVNLVGGTGPKNRITQEDVQRYVKGVMTGQAA 300 Query: 304 VAAAAPATNGSG--SGMNLLPWPSLDFSKFGTTELQPLSRIKKISGPNLHRNWVMIPHVT 361 A A S +NLLPWP +DF+KFG E +PLSRIKKISG NLHRNWVMIPHVT Sbjct: 301 APGKAAAAAAPAGGSELNLLPWPKVDFTKFGPVEPKPLSRIKKISGANLHRNWVMIPHVT 360 Query: 362 QFDEADVTELEEFRKTSNDAFAKAKSPVKLTMLAFVIKASVSALKKFPAFNASLDEKGEN 421 DEAD+TELE FR N KA VK TMLAFVIKA V ALKKFP FNASLD G+N Sbjct: 361 NNDEADITELETFRVQMNKEHEKAG--VKFTMLAFVIKAVVGALKKFPTFNASLD--GDN 416 Query: 422 LILKKYYNIGFAADTPNGLVVPVIKNADQKSIGQIATEMGELSAQARDGKLKPADMQGAT 481 L+ K+YY++GFAADTPNGL+VPVI++AD+K + IA EM ELS AR+GKLKP MQG Sbjct: 417 LVFKQYYHVGFAADTPNGLMVPVIRDADKKGVVDIAREMAELSKAAREGKLKPDQMQGGC 476 Query: 482 FTISSLGGIGGTAFTPIINAPEVAILGLSKSITKPVWDGKQFVPRLMLPTSLSYDHRVID 541 F+ISSLGGIGGT FTPIINAPEVAILGLS+ KPVWDGKQFVPRL LP SLSYDHRVID Sbjct: 477 FSISSLGGIGGTHFTPIINAPEVAILGLSRGYQKPVWDGKQFVPRLTLPLSLSYDHRVID 536 Query: 542 GAMGARFSAYLADVLGDLRKSLL 564 GA ARF+AYLA VL D R+ LL Sbjct: 537 GAEAARFNAYLAAVLADFRRVLL 559 >ref|YP_004156024.1| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [Variovorax paradoxus EPS] gb|ADU37913.1| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [Variovorax paradoxus EPS] Length = 559 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 370/563 (65%), Positives = 429/563 (76%), Gaps = 16/563 (2%) Query: 14 MSQVEVKVPDIGDFKEVEVIEVMVKVGDTIKVEQSLLTVESDKASMEIPSSQAGVVKEIK 73 M+ VEVKVPDIGDF EV VIEV+VKVGDT+K EQSL+TVESDKASMEIPSS AGVVKEIK Sbjct: 1 MAAVEVKVPDIGDFDEVAVIEVLVKVGDTVKAEQSLITVESDKASMEIPSSTAGVVKEIK 60 Query: 74 VKVGDKVAEGSLLVIVEGEGAAAAPAAAPQAAAAASAAAQASAPAPAPVAAPAAAAGGTV 133 V++G KV EGS+++++E EGAAAAPA AP AA A +AAA A A AA AAA G V Sbjct: 61 VEIGGKVKEGSVVLVLEAEGAAAAPAPAPAAAPAPAAAAPAPAATAPAPAAAPAAASGPV 120 Query: 134 EIEVPDIGDFKEVEVIEVMVKVGDTVKAEQSLLTVESDKASMEIPSSHAGVIKELKIKLG 193 EI+VPDIGDFK+V VIE++VK GDT+ A+QSL+TVESDKASMEIPSS AGV+KELK+K+G Sbjct: 121 EIKVPDIGDFKDVAVIELLVKPGDTIAADQSLITVESDKASMEIPSSGAGVLKELKVKVG 180 Query: 194 DKVAKGSIIATIEAAGGAPAAASAAAPAAAPAAAPAPAAAPAPAAAAVPAIATA------ 247 D V G +IA +E + GA A A A A AAAPAAA A A APA A+ A A A Sbjct: 181 DTVNIGDLIAILEGSAGAAAPAPAQAAAAAPAAATASAPAPAAASPAPAASPAAAAAPHD 240 Query: 248 -SATSTGGKAHASPSVRKFARELGVDLSRVPATGPKGRILQLDVQNFVKGVMAGS----- 301 + + HASPSVRKFARELGV L V +GPKGRI Q DVQ F K VM+G Sbjct: 241 PTTAPSANLPHASPSVRKFARELGVPLEEVKGSGPKGRITQEDVQGFTKAVMSGQASTKA 300 Query: 302 TSVAAAAPATNGSGSGMNLLPWPSLDFSKFGTTELQPLSRIKKISGPNLHRNWVMIPHVT 361 ++ A A + G+ + L+PWP +DF+KFG E + LSRIKK+SG NLHRNWVMIPHVT Sbjct: 301 SAAKAPAGGGSADGAALGLIPWPKVDFAKFGAVERKDLSRIKKLSGANLHRNWVMIPHVT 360 Query: 362 QFDEADVTELEEFRKTSNDAFAKAKSPVKLTMLAFVIKASVSALKKFPAFNASLDEKGEN 421 DEAD+TELE FR ++N KS VK+TMLAFVIKA V+ALKKFP FNASLD G+ Sbjct: 361 NNDEADITELEAFRVSTNK--ENEKSGVKVTMLAFVIKAVVAALKKFPDFNASLD--GDQ 416 Query: 422 LILKKYYNIGFAADTPNGLVVPVIKNADQKSIGQIATEMGELSAQARDGKLKPADMQGAT 481 L+ K+Y+NIGFAADTPNGLVVPV+K+AD+K I QI+ EMGEL+ +ARDGKL ADMQG Sbjct: 417 LVYKQYFNIGFAADTPNGLVVPVLKDADKKGILQISAEMGELAKKARDGKLGSADMQGGC 476 Query: 482 FTISSLGGIGGTAFTPIINAPEVAILGLSKSITKPVWDGKQFVPRLMLPTSLSYDHRVID 541 +ISSLGGIGGT FTPIINAPEVAILGLSK KPVWDGKQFVPRL LP SLSYDHRVID Sbjct: 477 MSISSLGGIGGTHFTPIINAPEVAILGLSKGQMKPVWDGKQFVPRLTLPLSLSYDHRVID 536 Query: 542 GAMGARFSAYLADVLGDLRKSLL 564 GA+ ARF+AYL VL D R+ LL Sbjct: 537 GALAARFNAYLGQVLADYRRILL 559 >ref|YP_004235229.1| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX46662.1| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 565 Score = 553 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 362/569 (63%), Positives = 421/569 (73%), Gaps = 22/569 (3%) Query: 14 MSQVEVKVPDIGDFKEVEVIEVMVKVGDTIKVEQSLLTVESDKASMEIPSSQAGVVKEIK 73 M+ +++KVPDIGDF V VIE++VK GDT+K EQSL+TVESDKASMEIPSS AGVVKE+K Sbjct: 1 MALIDIKVPDIGDFDAVGVIELLVKPGDTVKAEQSLITVESDKASMEIPSSHAGVVKEVK 60 Query: 74 VKVGDKVAEGSLLVIVEGEG-AAAAPAAAPQAAAAASAAAQASAPAPAPVAAPAAAAGGT 132 VKVGD+V+EGS++V+VE EG A AA A A + A ++ APA AA G Sbjct: 61 VKVGDQVSEGSVIVVVEAEGEGAQPAAAPAAKADAPAPAPATASAPAPAAPAPAPAAAGP 120 Query: 133 VEIEVPDIGDFKEVEVIEVMVKVGDTVKAEQSLLTVESDKASMEIPSSHAGVIKELKIKL 192 ++++VPDIGDFK+V VIE++VK GDTVK EQSL TVESDKASMEIPS AGV+KELKIK+ Sbjct: 121 IDVKVPDIGDFKDVAVIELLVKPGDTVKEEQSLFTVESDKASMEIPSPAAGVVKELKIKI 180 Query: 193 GDKVAKGSIIATIEAAGGAPAAA-----------SAAAPAAAPAAAPAPAAAPAPAAAAV 241 GDKV G ++A +E A GAP+AA + A AP PA AAP A A Sbjct: 181 GDKVNVGDLVAVLEGAVGAPSAAPAAAPVDRPAPQSEPDARAPRQLPAEEAAPQAGATAA 240 Query: 242 PAIATASATSTG---GKAHASPSVRKFARELGVDLSRVPATGPKGRILQLDVQNFVKGVM 298 A A A G HASPSVRKFARELGV L + +GPKGRI Q DVQ F + VM Sbjct: 241 SAPAPAPHAPGAAPIGLPHASPSVRKFARELGVPLEEIKGSGPKGRITQEDVQAFTRQVM 300 Query: 299 AG---STSVAAAAPATNGSGSGMNLLPWPSLDFSKFGTTELQPLSRIKKISGPNLHRNWV 355 AG + + AA APA GSG GM+LLPWP +DFSKFG E + LSRIKKISG NLHRNWV Sbjct: 301 AGGVQTKAQAAKAPAGGGSGVGMDLLPWPKVDFSKFGGVERKDLSRIKKISGANLHRNWV 360 Query: 356 MIPHVTQFDEADVTELEEFRKTSNDAFAKAKSPVKLTMLAFVIKASVSALKKFPAFNASL 415 MIPHVT DEAD+TELE FR ++N KS VK+TMLAFVIKA V+ALKKFP FN SL Sbjct: 361 MIPHVTNNDEADITELEAFRVSTNKE--NEKSGVKVTMLAFVIKAVVAALKKFPEFNTSL 418 Query: 416 DEKGENLILKKYYNIGFAADTPNGLVVPVIKNADQKSIGQIATEMGELSAQARDGKLKPA 475 D G+ L+ K+Y++IGFAADTPNGLVVPV+K+AD+K I QI+ EMGEL+ +ARDGKL A Sbjct: 419 D--GDTLVYKQYFHIGFAADTPNGLVVPVLKDADKKGILQISQEMGELAKKARDGKLGAA 476 Query: 476 DMQGATFTISSLGGIGGTAFTPIINAPEVAILGLSKSITKPVWDGKQFVPRLMLPTSLSY 535 DMQG F+ISSLGGIGGT FTPIINAPEVAILGLSK KPVWDGKQFVPRL+LP SLSY Sbjct: 477 DMQGGCFSISSLGGIGGTHFTPIINAPEVAILGLSKGQMKPVWDGKQFVPRLVLPLSLSY 536 Query: 536 DHRVIDGAMGARFSAYLADVLGDLRKSLL 564 DHRVIDGA ARF+AYL VL D R+ LL Sbjct: 537 DHRVIDGASAARFNAYLGQVLADYRRILL 565 >ref|YP_002944064.1| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [Variovorax paradoxus S110] gb|ACS18798.1| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [Variovorax paradoxus S110] Length = 556 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 369/562 (65%), Positives = 428/562 (76%), Gaps = 17/562 (3%) Query: 14 MSQVEVKVPDIGDFKEVEVIEVMVKVGDTIKVEQSLLTVESDKASMEIPSSQAGVVKEIK 73 M+ VEVKVPDIGDF EV VIEV+VKVGDT+K EQSL+TVESDKASMEIPSS AGVVKE+K Sbjct: 1 MAAVEVKVPDIGDFDEVAVIEVLVKVGDTVKAEQSLITVESDKASMEIPSSTAGVVKELK 60 Query: 74 VKVGDKVAEGSLLVIVEGEGAAAAPAAAPQAAAAASAAAQASAPAPAPVAAPAAAAGGTV 133 V+VG KV EGS+++++E +GAAAA A A A A+AA +A APAP AAPAA+ G V Sbjct: 61 VEVGSKVKEGSVVLVLEADGAAAAAPAPAAAPAPAAAAPAPAAAAPAPAAAPAAS--GPV 118 Query: 134 EIEVPDIGDFKEVEVIEVMVKVGDTVKAEQSLLTVESDKASMEIPSSHAGVIKELKIKLG 193 E++VPDIGDFK+V VIE++VK GD + A+QSL+TVESDKASMEIPSS AGV+KELK+K+G Sbjct: 119 EVKVPDIGDFKDVAVIELLVKPGDAIAADQSLITVESDKASMEIPSSAAGVLKELKVKVG 178 Query: 194 DKVAKGSIIATIEAAGGAPAAASAAAPAAAPAAAPAPAAAPAPAAAAVPAIATA------ 247 D V G +IA +E A GA A A A A AAAPAAA A A APA A+ A A A Sbjct: 179 DTVNIGDLIAILEGAAGAAAPAPAQAAAAAPAAATASAPAPAAASPAPAASPAAAAAPHE 238 Query: 248 -SATSTGGKAHASPSVRKFARELGVDLSRVPATGPKGRILQLDVQNFVKGVMAGSTSVAA 306 + TG HASPSVRKFARELGV L V +GPKGRI Q DVQ F K VM+G S A Sbjct: 239 PTVAPTGNLPHASPSVRKFARELGVPLEEVKGSGPKGRITQEDVQGFTKAVMSGQASTKA 298 Query: 307 AAPATNGSGSGMN----LLPWPSLDFSKFGTTELQPLSRIKKISGPNLHRNWVMIPHVTQ 362 +A G L+PWP +DF+KFGT E + LSRIKK+SG NLHRNWVMIPHVT Sbjct: 299 SAAKAPAGGGADGAALGLIPWPKVDFTKFGTVERKDLSRIKKLSGANLHRNWVMIPHVTN 358 Query: 363 FDEADVTELEEFRKTSNDAFAKAKSPVKLTMLAFVIKASVSALKKFPAFNASLDEKGENL 422 DEAD+TELE FR ++N KS +K+TMLAFVIKA V+ALKKFP FNASLD G+ L Sbjct: 359 NDEADITELEAFRVSTNKE--NEKSGIKVTMLAFVIKAVVAALKKFPDFNASLD--GDQL 414 Query: 423 ILKKYYNIGFAADTPNGLVVPVIKNADQKSIGQIATEMGELSAQARDGKLKPADMQGATF 482 + K+Y++IGFAADTPNGLVVPV+K+AD+K I QI+ EMGEL+ +ARDGKL ADMQG Sbjct: 415 VYKQYFHIGFAADTPNGLVVPVLKDADKKGILQISQEMGELAKKARDGKLGSADMQGGCM 474 Query: 483 TISSLGGIGGTAFTPIINAPEVAILGLSKSITKPVWDGKQFVPRLMLPTSLSYDHRVIDG 542 +ISSLGGIGGT FTPIINAPEVAILGLSK KPVWDGKQFVPRL LP SLSYDHRVIDG Sbjct: 475 SISSLGGIGGTHFTPIINAPEVAILGLSKGQMKPVWDGKQFVPRLTLPLSLSYDHRVIDG 534 Query: 543 AMGARFSAYLADVLGDLRKSLL 564 A+ ARF+AYL VL D R+ LL Sbjct: 535 ALAARFNAYLGQVLADYRRILL 556