BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3102.p         (151 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774873.1| DNA polymerase III subunit chi [Herbaspirill...   246   9e-64
ref|YP_001352359.1| DNA polymerase III chi subunit [Janthinobact...   195   2e-48
ref|YP_004751560.1| putative DNA polymerase III, chi subunit [Co...   186   1e-45
ref|YP_001099063.1| putative DNA polymerase III subunit chi [Her...   181   3e-44
ref|ZP_08275004.1| DNA polymerase III subunit chi [Oxalobacterac...   167   3e-40

>ref|YP_003774873.1| DNA polymerase III subunit chi [Herbaspirillum seropedicae SmR1]
 gb|ADJ62965.1| DNA polymerase III (chi subunit) protein [Herbaspirillum
           seropedicae SmR1]
          Length = 139

 Score =  246 bits (627), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 122/139 (87%), Positives = 133/139 (95%)

Query: 13  MTRIDFHSNVPQKIAYVCRLVRKARASGATLVLRTPDRAELQQLDQALWSFSEQDFLPHV 72
           MTRIDFHSNVPQKI YVCRLVRKARA+G  +V+R+PD A+LQQLDQALWSFSEQDFLPHV
Sbjct: 1   MTRIDFHSNVPQKITYVCRLVRKARATGVNIVVRSPDAAQLQQLDQALWSFSEQDFLPHV 60

Query: 73  MAGDPLAAQTPIILTADDSADLPHHQILINLGSDTPAHFARFERLLEIISADDADKAAGR 132
           MA DPLAAQT IILT+DD+A+LPHHQ+LINLG+DTPAHFARFERLLEIISADDADKAAGR
Sbjct: 61  MAKDPLAAQTAIILTSDDAAELPHHQLLINLGADTPAHFARFERLLEIISADDADKAAGR 120

Query: 133 DRYRFYKERGYPLSHHVAA 151
           DRYRFYKERGYPL+HHVAA
Sbjct: 121 DRYRFYKERGYPLTHHVAA 139


>ref|YP_001352359.1| DNA polymerase III chi subunit [Janthinobacterium sp. Marseille]
 gb|ABR88722.1| DNA polymerase III chi subunit [Janthinobacterium sp. Marseille]
          Length = 141

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 94/138 (68%), Positives = 111/138 (80%)

Query: 13  MTRIDFHSNVPQKIAYVCRLVRKARASGATLVLRTPDRAELQQLDQALWSFSEQDFLPHV 72
           MTRIDFHSNVP KI+Y CRL RKAR +   +V+   DRA+L QLD+ LW+FSEQDFLPHV
Sbjct: 1   MTRIDFHSNVPDKISYACRLARKARNANFQIVILAQDRAQLAQLDEKLWTFSEQDFLPHV 60

Query: 73  MAGDPLAAQTPIILTADDSADLPHHQILINLGSDTPAHFARFERLLEIISADDADKAAGR 132
           M  D LAAQTPI+LTAD + + PH QILINL   +P HFARFER+ E+IS +DADK+AGR
Sbjct: 61  MLDDALAAQTPILLTADSAMESPHTQILINLSDTSPTHFARFERMFEVISTEDADKSAGR 120

Query: 133 DRYRFYKERGYPLSHHVA 150
           DRY FYK+RGYPL+H VA
Sbjct: 121 DRYSFYKQRGYPLTHFVA 138


>ref|YP_004751560.1| putative DNA polymerase III, chi subunit [Collimonas fungivorans
           Ter331]
 gb|AEK60737.1| putative DNA polymerase III, chi subunit [Collimonas fungivorans
           Ter331]
          Length = 141

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 89/138 (64%), Positives = 105/138 (76%)

Query: 13  MTRIDFHSNVPQKIAYVCRLVRKARASGATLVLRTPDRAELQQLDQALWSFSEQDFLPHV 72
           MT+IDFH+N+  K  Y CRLVRKARA+   +V+ +    +L  LD+ALW+FSE DFLPHV
Sbjct: 1   MTQIDFHTNISDKFLYTCRLVRKARAAQRQIVILSSSAEDLATLDRALWTFSEHDFLPHV 60

Query: 73  MAGDPLAAQTPIILTADDSADLPHHQILINLGSDTPAHFARFERLLEIISADDADKAAGR 132
            AGDPLAAQTP+IL AD+    PHHQILINL    P HFARFER+ EIIS  D DKA GR
Sbjct: 61  RAGDPLAAQTPVILAADEETGWPHHQILINLSGKAPQHFARFERMFEIISLADDDKAGGR 120

Query: 133 DRYRFYKERGYPLSHHVA 150
           DRYRFY++RGYPL+H VA
Sbjct: 121 DRYRFYQQRGYPLTHFVA 138


>ref|YP_001099063.1| putative DNA polymerase III subunit chi [Herminiimonas
           arsenicoxydans]
 emb|CAL60936.1| putative DNA polymerase III chi subunit, HolC [Herminiimonas
           arsenicoxydans]
          Length = 141

 Score =  181 bits (459), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 88/138 (63%), Positives = 107/138 (77%)

Query: 13  MTRIDFHSNVPQKIAYVCRLVRKARASGATLVLRTPDRAELQQLDQALWSFSEQDFLPHV 72
           MTRIDFHSNVP KIAY CRL RKAR +   +V+   D A+L  LD+ALW+FSE DFLPHV
Sbjct: 1   MTRIDFHSNVPDKIAYACRLARKARKADFQVVILARDSAQLAALDEALWTFSEHDFLPHV 60

Query: 73  MAGDPLAAQTPIILTADDSADLPHHQILINLGSDTPAHFARFERLLEIISADDADKAAGR 132
              DPLAAQT I+LT + +   PHHQILINL    P HFARFER+ E++S+DDADK++GR
Sbjct: 61  GMDDPLAAQTAILLTTEQAMKSPHHQILINLSDTPPEHFARFERMFEVVSSDDADKSSGR 120

Query: 133 DRYRFYKERGYPLSHHVA 150
           +RY +YK+RGYPL+H VA
Sbjct: 121 ERYAYYKQRGYPLTHFVA 138


>ref|ZP_08275004.1| DNA polymerase III subunit chi [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF31526.1| DNA polymerase III subunit chi [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 141

 Score =  167 bits (424), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 90/140 (64%), Positives = 108/140 (77%), Gaps = 3/140 (2%)

Query: 13  MTRIDFHSNVPQKIAYVCRLVRKARASGATLVLRTPDRAELQQLDQALWSFSEQDFLPHV 72
           MTR+DFHSN+P KI+YVCRLVRKAR + + +VL   +  +L  LD ALW+FSE DF+PHV
Sbjct: 1   MTRVDFHSNIPDKISYVCRLVRKARHAHSRIVL-MGEPQQLAALDAALWTFSEHDFVPHV 59

Query: 73  MAGDPLAAQTPIIL-TADDSAD-LPHHQILINLGSDTPAHFARFERLLEIISADDADKAA 130
           MAGD LA  TP+IL T D  AD LPHHQ+LINL S  P  FARFERL EI++ D AD A+
Sbjct: 60  MAGDALAIHTPVILATTDADADALPHHQVLINLTSQPPPTFARFERLFEIVATDAADIAS 119

Query: 131 GRDRYRFYKERGYPLSHHVA 150
           GRDRYRFY++RGY L+H VA
Sbjct: 120 GRDRYRFYQQRGYALTHFVA 139