BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3101.p         (142 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774872.1| hypothetical protein Hsero_1448 [Herbaspiril...   147   4e-34

>ref|YP_003774872.1| hypothetical protein Hsero_1448 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62964.1| hypothetical protein Hsero_1448 [Herbaspirillum seropedicae SmR1]
          Length = 146

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 105/146 (71%), Positives = 117/146 (80%), Gaps = 6/146 (4%)

Query: 1   MNHDDNSIPLLTEIIPLAPAAPPAP-----DYAAPMQPGAFHTQPANTHYQAPAAAAPAM 55
           MN DDNSIPLLTE+IPLAPAAP        DYA P +PGAFHTQPA T YQA    AP +
Sbjct: 1   MNQDDNSIPLLTEVIPLAPAAPAHTPARAPDYAPPARPGAFHTQPAATSYQATPPGAPIV 60

Query: 56  TPLPPVTPAAEQYRQWEQEIRENVLQSLLERVDTVLHQHLQDQMALALDHLSDIVMQRVR 115
            PLP VTPAAEQYRQWEQEIRENVLQSLLE+VDTVL Q LQDQMAL LD+LS ++ QR++
Sbjct: 61  APLP-VTPAAEQYRQWEQEIRENVLQSLLEQVDTVLQQQLQDQMALVLDNLSTVLTQRIK 119

Query: 116 EGLRDALAETVERAVAEEMARFTSSK 141
           + L +ALAETV RAVAEEMARF S+K
Sbjct: 120 DSLHEALAETVTRAVAEEMARFASTK 145