BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3100.p (443 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774871.1| D-amino acid dehydrogenase small subunit [He... 890 0.0 ref|YP_001099061.1| D-amino acid dehydrogenase small subunit [He... 773 0.0 ref|YP_004751559.1| D-amino acid dehydrogenase small subunit [Co... 771 0.0 ref|YP_001352357.1| D-amino-acid dehydrogenase, small subunit [J... 767 0.0 ref|YP_001098713.1| putative D-amino acid dehydrogenase [Hermini... 689 0.0 >ref|YP_003774871.1| D-amino acid dehydrogenase small subunit [Herbaspirillum seropedicae SmR1] gb|ADJ62963.1| D-amino acid dehydrogenase, small subunit, protein [Herbaspirillum seropedicae SmR1] Length = 436 Score = 890 bits (2301), Expect = 0.0, Method: Composition-based stats. Identities = 431/436 (98%), Positives = 435/436 (99%) Query: 8 MKVIVLGAGIIGTASAWFLKKQGYDVTVIDRQPGAAQETSFANGCQISVSHAEPWANPAA 67 MKVIVLGAGIIGTASAWFLKKQGYDVTVIDRQPGAAQETSFANGCQISVSHAEPWANPAA Sbjct: 1 MKVIVLGAGIIGTASAWFLKKQGYDVTVIDRQPGAAQETSFANGCQISVSHAEPWANPAA 60 Query: 68 PMKVLKWLGKEDAPLLYRFRPEWLQWKWAVAFLRECTAARTDENIRNIVALCEYSRQTLQ 127 PMKVLKWLGKEDAPLLYRFRPEWLQWKWAVAFLRECTAARTDENIRNIVALCEYSRQTLQ Sbjct: 61 PMKVLKWLGKEDAPLLYRFRPEWLQWKWAVAFLRECTAARTDENIRNIVALCEYSRQTLQ 120 Query: 128 AVRADTGIQYDHLTRGILHFYTEEKEFQDSLPAAKLMRDLGCPRESIGADEVVRIEPALA 187 AVRA+TGIQYDHLTRGILHFYTEEKEFQDSLPAAKLMRDLGCPRESIGADEVVRIEPALA Sbjct: 121 AVRAETGIQYDHLTRGILHFYTEEKEFQDSLPAAKLMRDLGCPRESIGADEVVRIEPALA 180 Query: 188 SIRNKIVGGDFTATDESGDVFKLTTGLAKKSEEAGVEFRYSTSITRLITEGAGAAARVTG 247 SIRNKIVGGDFTATDESGDVFKLTTGLAKKS EAGVEFRYST+ITRLITEGAGAAARVTG Sbjct: 181 SIRNKIVGGDFTATDESGDVFKLTTGLAKKSAEAGVEFRYSTTITRLITEGAGAAARVTG 240 Query: 248 VEVINPDGRHEVLKADTFVVAMGSFSQQLVKPLGIDLLLYPGKGYSATYQITNPDAAPTV 307 VE+INPDGRHEVLKADTFVVAMGSFSQQLVKPLGIDLLLYPGKGYSATYQITNPDAAPTV Sbjct: 241 VEIINPDGRHEVLKADTFVVAMGSFSQQLVKPLGIDLLLYPGKGYSATYQITNPDAAPTV 300 Query: 308 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCEAITRRTRELFPDGCDYENPTY 367 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCEAITRRTRELFPDGCDYENPTY Sbjct: 301 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCEAITRRTRELFPDGCDYENPTY 360 Query: 368 WTGLRPLTPSNVPYVGKTKFANLYLNTGHGTLGWTMGCGSGRAIAEIVSGHVPEIDFAFT 427 WTGLRPLTPSNVPYVGKTKFANLYLNTGHGTLGWTMGCGSGRAIAEIV+GHVPEIDFAFT Sbjct: 361 WTGLRPLTPSNVPYVGKTKFANLYLNTGHGTLGWTMGCGSGRAIAEIVAGHVPEIDFAFT 420 Query: 428 GLPRWNRARQVVTQAA 443 GLPRWNRARQVVTQAA Sbjct: 421 GLPRWNRARQVVTQAA 436 >ref|YP_001099061.1| D-amino acid dehydrogenase small subunit [Herminiimonas arsenicoxydans] emb|CAL60934.1| D-amino acid dehydrogenase small subunit [Herminiimonas arsenicoxydans] Length = 443 Score = 773 bits (1996), Expect = 0.0, Method: Composition-based stats. Identities = 358/438 (81%), Positives = 401/438 (91%) Query: 5 ESEMKVIVLGAGIIGTASAWFLKKQGYDVTVIDRQPGAAQETSFANGCQISVSHAEPWAN 64 E EMKVIVLG+GIIGTASAWFL K G+DVTVIDRQPGAAQETSFANGCQISVSHAEPWAN Sbjct: 3 EIEMKVIVLGSGIIGTASAWFLNKAGHDVTVIDRQPGAAQETSFANGCQISVSHAEPWAN 62 Query: 65 PAAPMKVLKWLGKEDAPLLYRFRPEWLQWKWAVAFLRECTAARTDENIRNIVALCEYSRQ 124 PAAPMKVLKWLGKEDAPLLYRFRPEWLQWKWA+ FLRECT ART+ENIR IVA+CEYSRQ Sbjct: 63 PAAPMKVLKWLGKEDAPLLYRFRPEWLQWKWALNFLRECTPARTNENIRQIVAICEYSRQ 122 Query: 125 TLQAVRADTGIQYDHLTRGILHFYTEEKEFQDSLPAAKLMRDLGCPRESIGADEVVRIEP 184 TL +RA+TGI+YD+L RGILHFYTE+KEF DSLPAAKLMRDLGCPR+SI DEV+RIEP Sbjct: 123 TLVGLRAETGIEYDNLNRGILHFYTEQKEFDDSLPAAKLMRDLGCPRDSISTDEVIRIEP 182 Query: 185 ALASIRNKIVGGDFTATDESGDVFKLTTGLAKKSEEAGVEFRYSTSITRLITEGAGAAAR 244 ALA IR+KIVGGDFTA DESGDV+K T+GLAKKS EAGV F+++T++TRLITEGAGA+A+ Sbjct: 183 ALARIRDKIVGGDFTANDESGDVYKFTSGLAKKSAEAGVNFQFNTTVTRLITEGAGASAK 242 Query: 245 VTGVEVINPDGRHEVLKADTFVVAMGSFSQQLVKPLGIDLLLYPGKGYSATYQITNPDAA 304 +TGVE+I P+GRHEVL AD FV+AMGSFS L KPLGIDL++YPGKGYSATY +T+P AA Sbjct: 243 ITGVEIITPEGRHEVLHADAFVLAMGSFSTALAKPLGIDLMIYPGKGYSATYAVTDPSAA 302 Query: 305 PTVSLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCEAITRRTRELFPDGCDYEN 364 P+VSLTDDGYKLVVSRLGDRLRVAGTCELNGYTR+LNT RCEAITRRTRELFPD CDYEN Sbjct: 303 PSVSLTDDGYKLVVSRLGDRLRVAGTCELNGYTRDLNTARCEAITRRTRELFPDACDYEN 362 Query: 365 PTYWTGLRPLTPSNVPYVGKTKFANLYLNTGHGTLGWTMGCGSGRAIAEIVSGHVPEIDF 424 P YWTGLRPLTPSNVPY+GKTKF+NL+LNTGHGTLGWTMGCGSGRA+A+IVSGH PE++F Sbjct: 363 PVYWTGLRPLTPSNVPYIGKTKFSNLFLNTGHGTLGWTMGCGSGRALADIVSGHQPEVNF 422 Query: 425 AFTGLPRWNRARQVVTQA 442 FTG+P + R + Q+ Sbjct: 423 RFTGMPYRSSDRIITPQS 440 >ref|YP_004751559.1| D-amino acid dehydrogenase small subunit [Collimonas fungivorans Ter331] gb|AEK60736.1| D-amino acid dehydrogenase small subunit [Collimonas fungivorans Ter331] Length = 444 Score = 771 bits (1990), Expect = 0.0, Method: Composition-based stats. Identities = 357/425 (84%), Positives = 401/425 (94%) Query: 7 EMKVIVLGAGIIGTASAWFLKKQGYDVTVIDRQPGAAQETSFANGCQISVSHAEPWANPA 66 EMKVIVLGAG+IGT+SAWFL K+G+DVTVI+RQPGAAQETSFANGCQISVSHAEPWANP Sbjct: 6 EMKVIVLGAGVIGTSSAWFLNKEGHDVTVIERQPGAAQETSFANGCQISVSHAEPWANPQ 65 Query: 67 APMKVLKWLGKEDAPLLYRFRPEWLQWKWAVAFLRECTAARTDENIRNIVALCEYSRQTL 126 AP+KVLKWLG+EDAPLLYRFRPEWLQWKWA+ FLRECT ART++NIR IVA+CEYSRQTL Sbjct: 66 APLKVLKWLGQEDAPLLYRFRPEWLQWKWALNFLRECTPARTNDNIRQIVAICEYSRQTL 125 Query: 127 QAVRADTGIQYDHLTRGILHFYTEEKEFQDSLPAAKLMRDLGCPRESIGADEVVRIEPAL 186 QAVRA+TG+ YD LTRGILHFYTE+KEF SLPAA+LMRDLGCPR+SI ADEVVRIEPAL Sbjct: 126 QAVRAETGVDYDCLTRGILHFYTEQKEFDISLPAAQLMRDLGCPRDSISADEVVRIEPAL 185 Query: 187 ASIRNKIVGGDFTATDESGDVFKLTTGLAKKSEEAGVEFRYSTSITRLITEGAGAAARVT 246 A IR+KIVGGDFTATDESGDV+K T+GLA K+ EAGV+F+Y+TS+TRLITEG+GA A++T Sbjct: 186 ARIRDKIVGGDFTATDESGDVYKFTSGLADKAAEAGVKFQYNTSVTRLITEGSGAGAKIT 245 Query: 247 GVEVINPDGRHEVLKADTFVVAMGSFSQQLVKPLGIDLLLYPGKGYSATYQITNPDAAPT 306 GVEVIN DGRHEVL AD FVVAMGSFS L+KPLGI+L++YPGKGYSATY+ITNP+AAP+ Sbjct: 246 GVEVINADGRHEVLHADAFVVAMGSFSTPLLKPLGIELMIYPGKGYSATYRITNPEAAPS 305 Query: 307 VSLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCEAITRRTRELFPDGCDYENPT 366 VSLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCEAITRRTRELFPDGCDY++P Sbjct: 306 VSLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCEAITRRTRELFPDGCDYDDPV 365 Query: 367 YWTGLRPLTPSNVPYVGKTKFANLYLNTGHGTLGWTMGCGSGRAIAEIVSGHVPEIDFAF 426 YWTGLRP+TPSNVPY+GKT+ +NL+LNTGHGTLGWTMGCGSGRAIAEI+SG PE+DFAF Sbjct: 366 YWTGLRPMTPSNVPYIGKTRISNLFLNTGHGTLGWTMGCGSGRAIAEIISGRRPEVDFAF 425 Query: 427 TGLPR 431 TG+PR Sbjct: 426 TGMPR 430 >ref|YP_001352357.1| D-amino-acid dehydrogenase, small subunit [Janthinobacterium sp. Marseille] gb|ABR90811.1| D-amino-acid dehydrogenase, small subunit [Janthinobacterium sp. Marseille] Length = 438 Score = 767 bits (1980), Expect = 0.0, Method: Composition-based stats. Identities = 357/433 (82%), Positives = 403/433 (93%), Gaps = 1/433 (0%) Query: 8 MKVIVLGAGIIGTASAWFLKKQGYDVTVIDRQPGAAQETSFANGCQISVSHAEPWANPAA 67 MKVIVLG+GIIGT+SAWFL K G++VTVI+RQPGAAQETSFANGCQISVSHAEPWANPAA Sbjct: 1 MKVIVLGSGIIGTSSAWFLNKLGHEVTVIERQPGAAQETSFANGCQISVSHAEPWANPAA 60 Query: 68 PMKVLKWLGKEDAPLLYRFRPEWLQWKWAVAFLRECTAARTDENIRNIVALCEYSRQTLQ 127 PMKVLKWLGKEDAPLLYRFRPEWLQWKWA+ FLRECT ART++NIR IVA+CEYSRQTLQ Sbjct: 61 PMKVLKWLGKEDAPLLYRFRPEWLQWKWALNFLRECTPARTNDNIRQIVAICEYSRQTLQ 120 Query: 128 AVRADTGIQYDHLTRGILHFYTEEKEFQDSLPAAKLMRDLGCPRESIGADEVVRIEPALA 187 AVRA+TGI YD LT GILHFYT++KEF DSLPAAKLMRDLGCPR+SI ADEVVRIEPALA Sbjct: 121 AVRAETGINYDQLTSGILHFYTDQKEFDDSLPAAKLMRDLGCPRDSISADEVVRIEPALA 180 Query: 188 SIRNKIVGGDFTATDESGDVFKLTTGLAKKSEEAGVEFRYSTSITRLITEGAGAAARVTG 247 SIRNKIVGGDFTATDESGDV+K T+GLA K+ EAGV+F+Y+TS+TRL+TEG+GA A++TG Sbjct: 181 SIRNKIVGGDFTATDESGDVYKFTSGLAAKAAEAGVDFQYNTSVTRLLTEGSGANAKITG 240 Query: 248 VEVINPDGRHEVLKADTFVVAMGSFSQQLVKPLGIDLLLYPGKGYSATYQITNPDAAPTV 307 VEVI PDGRH+VL AD +V+AMGSFS +LV+PLGIDL++YPGKGYSATY++ +P AAPTV Sbjct: 241 VEVIGPDGRHKVLHADAYVMAMGSFSAELVRPLGIDLMIYPGKGYSATYKVIDPAAAPTV 300 Query: 308 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCEAITRRTRELFPDGCDYENPTY 367 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTR+LNT RCEAITRRTRELFPD CDY+NP Y Sbjct: 301 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRDLNTARCEAITRRTRELFPDACDYDNPVY 360 Query: 368 WTGLRPLTPSNVPYVGKTKFANLYLNTGHGTLGWTMGCGSGRAIAEIVSGHVPEIDFAFT 427 WTGLRPLTPSNVPY+GKTK++NLYLNTGHGTLGWTMGCGSGRA+AEIVSG P++DF FT Sbjct: 361 WTGLRPLTPSNVPYIGKTKYSNLYLNTGHGTLGWTMGCGSGRALAEIVSGLQPDLDFKFT 420 Query: 428 GLPRWNRARQVVT 440 G+P + +RQ+ T Sbjct: 421 GMP-YRPSRQLTT 432 >ref|YP_001098713.1| putative D-amino acid dehydrogenase [Herminiimonas arsenicoxydans] emb|CAL60584.1| putative D-amino acid dehydrogenase [Herminiimonas arsenicoxydans] Length = 442 Score = 689 bits (1777), Expect = 0.0, Method: Composition-based stats. Identities = 320/425 (75%), Positives = 368/425 (86%), Gaps = 1/425 (0%) Query: 8 MKVIVLGAGIIGTASAWFLKKQGYDVTVIDRQPGAAQETSFANGCQISVSHAEPWANPAA 67 MKVIVLG+GIIGTASAWFL K G++VTVIDRQPGAAQETSFANGCQISVSHA PWAN A Sbjct: 1 MKVIVLGSGIIGTASAWFLNKAGHEVTVIDRQPGAAQETSFANGCQISVSHATPWANKTA 60 Query: 68 PMKVLKWLGKEDAPLLYRFRPEWLQWKWAVAFLRECTAARTDENIRNIVALCEYSRQTLQ 127 PM +LK LGKEDAPLLYRFR EWLQWKW V FLREC ART NI IVA+ EYSRQTLQ Sbjct: 61 PMTILKSLGKEDAPLLYRFRAEWLQWKWGVNFLRECMPARTVHNIHQIVAIAEYSRQTLQ 120 Query: 128 AVRADTGIQYDHLTRGILHFYTEEKEFQDSLPAAKLMRDLGCPRESIGADEVVRIEPALA 187 AVR++ I YD LTRGILHFYT +K+F +SL +A +MRDLGCPR + ADE V++EPALA Sbjct: 121 AVRSEVDIDYDCLTRGILHFYTSQKDFDESLASAAVMRDLGCPRTPMTADEAVKLEPALA 180 Query: 188 SIRNKIVGGDFTATDESGDVFKLTTGLAKKSEEAGVEFRYSTSITRLITEGAGAAARVTG 247 IR +IVG DFT TDESGD++K TTGLA+K++E GV F++ST++TRLITEG+GAAARVTG Sbjct: 181 HIRPQIVGADFTETDESGDIYKFTTGLARKAQERGVHFQFSTTVTRLITEGSGAAARVTG 240 Query: 248 VEVINPDGRHEVLKADTFVVAMGSFSQQLVKPLGIDLLLYPGKGYSATYQITNPDAAPTV 307 VEVI+ +GRH+ L AD FV+A+GSFS L++PLGI L++YPGKGYSATY + N + APTV Sbjct: 241 VEVIDAEGRHQTLHADAFVMALGSFSVPLLQPLGIQLMIYPGKGYSATYPLVNAELAPTV 300 Query: 308 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCEAITRRTRELFPDGCDYENPTY 367 SL DDGYKLV+SRLGD+LRVAGTCE NGYTRELN TRC AITRRTRELFPD CDYE P Y Sbjct: 301 SLIDDGYKLVLSRLGDKLRVAGTCEFNGYTRELNATRCAAITRRTRELFPDACDYEQPAY 360 Query: 368 WTGLRPLTPSNVPYVGKTKFANLYLNTGHGTLGWTMGCGSGRAIAEIVSGHVPEIDFAFT 427 W GLRPLTPSNVPY+GKTKF+NL+LNTGHG+LGWTMGCGSGRAIA+I+SGH P++DFAFT Sbjct: 361 WAGLRPLTPSNVPYIGKTKFSNLFLNTGHGSLGWTMGCGSGRAIADIISGHQPDVDFAFT 420 Query: 428 GL-PR 431 G+ PR Sbjct: 421 GMAPR 425