BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3097.p (355 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774869.1| GGDEF family protein [Herbaspirillum seroped... 649 0.0 ref|XP_002535949.1| conserved hypothetical protein [Ricinus comm... 451 e-124 ref|YP_001355220.1| hypothetical protein mma_3530 [Janthinobacte... 400 e-109 ref|YP_004234728.1| diguanylate cyclase [Acidovorax avenae subsp... 395 e-108 ref|ZP_04763430.1| diguanylate cyclase [Acidovorax delafieldii 2... 389 e-106 >ref|YP_003774869.1| GGDEF family protein [Herbaspirillum seropedicae SmR1] gb|ADJ62961.1| GGDEF family protein [Herbaspirillum seropedicae SmR1] Length = 352 Score = 649 bits (1674), Expect = 0.0, Method: Composition-based stats. Identities = 315/352 (89%), Positives = 336/352 (95%), Gaps = 4/352 (1%) Query: 8 MKKPLLKHLVEITAHREHSRLAISVISALYQLTEVEAIRMLDIFTLRDEYFVQEKMVIRD 67 MKKPLLKHLVEITAHREHSRLAISV+SALYQLT+V+ IRM+DIFT+RDE++VQEKMVIRD Sbjct: 1 MKKPLLKHLVEITAHREHSRLAISVVSALYQLTDVKTIRMMDIFTMRDEHYVQEKMVIRD 60 Query: 68 GTVHTIAELTSDDPKEPLSAYPAMLACIRNHLNEFDETTPEGEHVLWLPVWLHGKMNSCL 127 GT+HTI E T+DDPKE LSAYPAM+ACIRNHLNE+ E TP+G HVLWLPVWLHGKMNSCL Sbjct: 61 GTLHTIDEHTADDPKELLSAYPAMVACIRNHLNEYLEATPDGLHVLWLPVWLHGKMNSCL 120 Query: 128 EIRSQQPFAPTMLDVIRGIFHVYCNYQSLLDYSERDALTGLFNRKTFDEQFTRYAFAIAP 187 EIRSQQPFAP M+DVI GIFHV+CNYQSLLDYSERDALTGLFNRKTFDEQFTRYAFAIAP Sbjct: 121 EIRSQQPFAPQMMDVIHGIFHVFCNYQSLLDYSERDALTGLFNRKTFDEQFTRYAFAIAP 180 Query: 188 HEAHSVDRDERRHDS----NDEPKGHWLGVVDIDHFKQVNDRYGHLYGDEVLILVANILR 243 HEAHS+++DERRHDS +DEPKGHWL VVDIDHFKQVNDRYGHLYGDEVLILVANILR Sbjct: 181 HEAHSMEQDERRHDSAEAQDDEPKGHWLAVVDIDHFKQVNDRYGHLYGDEVLILVANILR 240 Query: 244 ASFRAHDRIFRFGGEEFVILLRSTTLTDARKIFDRFRQNVQEYDFPQVGKVTVSLGFVNI 303 ASFR+HDRIFRFGGEEFVILLRSTTL+DARKIFDRFRQNVQEYDFPQVGKVTVSLGFV I Sbjct: 241 ASFRSHDRIFRFGGEEFVILLRSTTLSDARKIFDRFRQNVQEYDFPQVGKVTVSLGFVGI 300 Query: 304 ARETPVVILGHADQALYHAKKSGRNRICYYQELVNSGVLRSGITTNDTVEFF 355 ARETPVVILGHADQALYHAKK+GRNRICYYQELVNSGVLRSGI TNDTVEFF Sbjct: 301 ARETPVVILGHADQALYHAKKTGRNRICYYQELVNSGVLRSGIATNDTVEFF 352 >ref|XP_002535949.1| conserved hypothetical protein [Ricinus communis] gb|EEF26433.1| conserved hypothetical protein [Ricinus communis] Length = 237 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 219/237 (92%), Positives = 228/237 (96%), Gaps = 4/237 (1%) Query: 123 MNSCLEIRSQQPFAPTMLDVIRGIFHVYCNYQSLLDYSERDALTGLFNRKTFDEQFTRYA 182 MNSCLEIRSQQPFAP M+DVI GIFHV+CNYQSLLDYSERDALTGLFNRKTFDEQFTRYA Sbjct: 1 MNSCLEIRSQQPFAPQMMDVIHGIFHVFCNYQSLLDYSERDALTGLFNRKTFDEQFTRYA 60 Query: 183 FAIAPHEAHSVDRDERRHDS----NDEPKGHWLGVVDIDHFKQVNDRYGHLYGDEVLILV 238 FAIAPHEAHS+++DERRHDS +DEPKGHWL VVDIDHFKQVNDRYGHLYGDEVLILV Sbjct: 61 FAIAPHEAHSMEQDERRHDSAEAQDDEPKGHWLAVVDIDHFKQVNDRYGHLYGDEVLILV 120 Query: 239 ANILRASFRAHDRIFRFGGEEFVILLRSTTLTDARKIFDRFRQNVQEYDFPQVGKVTVSL 298 ANILRASFR+HDRIFRFGGEEFVILLRSTTL+DARKIFDRFRQNVQEYDFPQVGKVTVSL Sbjct: 121 ANILRASFRSHDRIFRFGGEEFVILLRSTTLSDARKIFDRFRQNVQEYDFPQVGKVTVSL 180 Query: 299 GFVNIARETPVVILGHADQALYHAKKSGRNRICYYQELVNSGVLRSGITTNDTVEFF 355 GFV IARETPVVILGHADQALYHAKK+GRNRICYYQELVNSGVLRSGI TNDTVEFF Sbjct: 181 GFVGIARETPVVILGHADQALYHAKKTGRNRICYYQELVNSGVLRSGIATNDTVEFF 237 >ref|YP_001355220.1| hypothetical protein mma_3530 [Janthinobacterium sp. Marseille] gb|ABR91117.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 356 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 195/353 (55%), Positives = 261/353 (73%), Gaps = 9/353 (2%) Query: 8 MKKPLLKHLVEITAHREHSRLAISVISALYQLTEVEAIRMLDIFTLRDEYFVQEKMVIRD 67 M LL HLVEIT HR+H L ISV++AL + V R++++F R E FV+ ++ I Sbjct: 1 MMGSLLDHLVEITGHRDHDLLDISVMTALLNMVGVAEARVMELFQSRGELFVRPRVWISG 60 Query: 68 GTVHTIAE--LTSDDPKEPLSAYPAMLACIRNHLNEFDETTPEGEHVLWLPVWLHGKMNS 125 G V T+ E +S+ EP+ ++P ++ACI N +E+T G HVLW+P+W + K+++ Sbjct: 61 GAVQTVDEEYTSSEQAGEPIVSFPGLVACIAQRKNRLEESTENGRHVLWIPIWQNDKVST 120 Query: 126 CLEIRSQQPFAPTMLDVIRGIFHVYCNYQSLLDYSERDALTGLFNRKTFDEQFTRYAFAI 185 CLEI QPF P ML V+ GI VY NYQSLLDYSERD+LTGL NRKTFDE+F R A Sbjct: 121 CLEIAHTQPFTPQMLQVMEGILSVYRNYQSLLDYSERDSLTGLLNRKTFDEKFARMVNA- 179 Query: 186 APHEAHSVD---RDERRHDSNDEPKGHWLGVVDIDHFKQVNDRYGHLYGDEVLILVANIL 242 P E+ + D R+ERRH + + K WL V+DIDHFK+VND++GHLYGDEVLILVAN+L Sbjct: 180 KPSESVARDDEGREERRHHA--DVKSQWLAVIDIDHFKRVNDQFGHLYGDEVLILVANVL 237 Query: 243 RASFRAHDRIFRFGGEEFVILLRSTTLTDARKIFDRFRQNVQEYDFPQVGKVTVSLGFVN 302 R SFRA DR+FRFGGEEFV+LLRS TL DA+ +F+RFR +++++ FPQ+G++TVS+GF + Sbjct: 238 RTSFRAQDRVFRFGGEEFVVLLRSATLADAQMVFERFRTSIEQHSFPQIGQITVSIGFAS 297 Query: 303 IARETPVVILGHADQALYHAKKSGRNRICYYQELVNSGVLRSGITTNDTVEFF 355 I++ETPVVILGHADQALY+AK GRN++CYY EL++ G+L+ G ++VEFF Sbjct: 298 ISQETPVVILGHADQALYYAKDHGRNQVCYYDELLDQGLLQVG-KKAESVEFF 349 >ref|YP_004234728.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX46161.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 347 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 203/351 (57%), Positives = 253/351 (72%), Gaps = 10/351 (2%) Query: 10 KPLLKHLVEITAHREHSRLAISVISALYQLTEVEAIRMLDIFTLRDEYFVQEKMVIRDGT 69 KP+L +LVE+T HR+H RL +SV+S L++L ++A+R L+IF E +V+ + +DG Sbjct: 2 KPILDNLVEMTGHRDHLRLEVSVLSTLHKLPSIKAVRALEIFQSGSEAYVRPRTWHKDGQ 61 Query: 70 VHTIAELTSDDPK-EPLSAYPAMLACIRNHLNEFDETTPEGEHVLWLPVWLHGKMNSCLE 128 + T DP+ EPLSA+PA+ CI ++ GEH+LWLPVWLH K+++C+E Sbjct: 62 MVTSDWEAPVDPRREPLSAFPALHECIAQRRPHVLQSARRGEHMLWLPVWLHDKVHACIE 121 Query: 129 IRSQQPFAPTMLDVIRGIFHVYCNYQSLLDYSERDALTGLFNRKTFDEQFTRYAFAIAPH 188 + +PF+ LDVI+ +F VY NYQSLLDYSERDALTGLFNRKTFDEQF R A ++ + Sbjct: 122 VTQSRPFSAHKLDVIQSVFFVYQNYQSLLDYSERDALTGLFNRKTFDEQFARRA-GMSSN 180 Query: 189 EAHSVDRDERRHDSNDEPKG----HWLGVVDIDHFKQVNDRYGHLYGDEVLILVANILRA 244 A V + D +P+G HWL VVDIDHFKQVNDR+GHLYGDEVLIL+ANILR Sbjct: 181 AATEVSAEP---DDASQPRGEPLQHWLAVVDIDHFKQVNDRFGHLYGDEVLILIANILRN 237 Query: 245 SFRAHDRIFRFGGEEFVILLRSTTLTDARKIFDRFRQNVQEYDFPQVGKVTVSLGFVNIA 304 SFR HDRIFRFGGEEFV+LLRSTTL A K F+RFR VQEYDFPQVG+VTVSLGF + Sbjct: 238 SFRGHDRIFRFGGEEFVVLLRSTTLATAHKAFNRFRTAVQEYDFPQVGRVTVSLGFASTE 297 Query: 305 RETPVVILGHADQALYHAKKSGRNRICYYQELVNSGVLRSGITTNDTVEFF 355 R PV ILG ADQALY+AK+ GRNR+CYY +LV G L + + ND VE F Sbjct: 298 RGAPVEILGQADQALYYAKEHGRNRVCYYDDLVRDGHLHAKV-ANDNVELF 347 >ref|ZP_04763430.1| diguanylate cyclase [Acidovorax delafieldii 2AN] gb|EER59762.1| diguanylate cyclase [Acidovorax delafieldii 2AN] Length = 346 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 198/349 (56%), Positives = 254/349 (72%), Gaps = 7/349 (2%) Query: 10 KPLLKHLVEITAHREHSRLAISVISALYQLTEVEAIRMLDIFTLRDEYFVQEKMVIRDGT 69 KP+L++LVE+T HR+H RL +SV+S L +L+ + +R L++F+ + V+ + ++DG Sbjct: 2 KPILQNLVEMTGHRDHLRLEVSVLSTLQKLSNITEVRALELFSDNGKPHVRPRTWLQDGA 61 Query: 70 -VHTIAELTSDDPKEPLSAYPAMLACIRNHLNEFDETTPEGEHVLWLPVWLHGKMNSCLE 128 V T ++ SD +EPL YPA+ C+ NH +T +G + LWLPVW+H K+ +CLE Sbjct: 62 LVPTDSDAASDPHREPLHNYPALCKCVDNHDIRATASTSKGRYTLWLPVWMHDKVTTCLE 121 Query: 129 IRSQQPFAPTMLDVIRGIFHVYCNYQSLLDYSERDALTGLFNRKTFDEQFTRYAFAIAPH 188 I +PF+ LDVI+GI VY NYQSLLDYSERDALTGLFNRKTFDEQF+R+ AP Sbjct: 122 ITQSRPFSAHKLDVIQGISLVYQNYQSLLDYSERDALTGLFNRKTFDEQFSRHT---APA 178 Query: 189 EAHSVDRDERRHDSND--EPKGHWLGVVDIDHFKQVNDRYGHLYGDEVLILVANILRASF 246 A D EP WL VVDIDHFKQVNDR+GHLYGDEVLILVANILR SF Sbjct: 179 VALRAQGGAAGDDGAACCEPIEQWLAVVDIDHFKQVNDRFGHLYGDEVLILVANILRNSF 238 Query: 247 RAHDRIFRFGGEEFVILLRSTTLTDARKIFDRFRQNVQEYDFPQVGKVTVSLGFVNIARE 306 R+HDRIFRFGGEEFV+LLRST L+ A K+F+RFR VQEY FPQVG+VTVS+GFV+ ++ Sbjct: 239 RSHDRIFRFGGEEFVVLLRSTDLSTAHKVFNRFRLAVQEYPFPQVGQVTVSVGFVSTSKG 298 Query: 307 TPVVILGHADQALYHAKKSGRNRICYYQELVNSGVLRSGITTNDTVEFF 355 +PV ILG ADQALYHAK++GRN++C+Y +L+ SG L + + ND VE F Sbjct: 299 SPVEILGQADQALYHAKENGRNQVCFYDDLIASGHLTAKV-ANDDVELF 346