BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3094.p         (84 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00944460.1| Hypothetical Protein RRSL_02801 [Ralstonia so...    93   1e-17
gb|AEG67487.1| cytotoxic translational repressor of toxin-antito...    93   2e-17
ref|ZP_04898399.1| possible bacteriophage protein [Burkholderia ...    92   4e-17
ref|YP_262806.1| hypothetical protein PFL_5748 [Pseudomonas fluo...    91   7e-17
ref|YP_785832.1| phage protein [Bordetella avium 197N] >gi|11542...    91   8e-17

>ref|ZP_00944460.1| Hypothetical Protein RRSL_02801 [Ralstonia solanacearum UW551]
 ref|YP_002261155.1| cytotoxic translational repressor of toxin-antitoxin stability
          system protein [Ralstonia solanacearum IPO1609]
 gb|EAP73017.1| Hypothetical Protein RRSL_02801 [Ralstonia solanacearum UW551]
 emb|CAQ63100.1| cytotoxic translational repressor of toxin-antitoxin stability
          system protein [Ralstonia solanacearum IPO1609]
          Length = 90

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/84 (53%), Positives = 59/84 (70%)

Query: 1  MNSIKWHPRAIKQLMKINRSDQIKIKDATAKLAQMPHCLQVKTLTNHPCQFRLRVGHYRV 60
          +N++ W  RA +QL K++R  Q  +  A  +L  MPHC QVK L  H C +RLRVG YRV
Sbjct: 5  INAVHWTARAARQLRKLDRQHQRMLVQAVGQLEAMPHCQQVKALREHRCGYRLRVGDYRV 64

Query: 61 FFNFDGTVRIVYIEEVSKRDDRTY 84
           F++DG +RIV I+EVSKRD+RTY
Sbjct: 65 LFDWDGGIRIVEIQEVSKRDERTY 88


>gb|AEG67487.1| cytotoxic translational repressor of toxin-antitoxin stability
          system protein [Ralstonia solanacearum Po82]
          Length = 90

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/84 (53%), Positives = 59/84 (70%)

Query: 1  MNSIKWHPRAIKQLMKINRSDQIKIKDATAKLAQMPHCLQVKTLTNHPCQFRLRVGHYRV 60
          +N++ W  RA +QL K++R  Q  +  A  +L  MPHC QVK L  H C +RLRVG YRV
Sbjct: 5  INAVHWTARAARQLRKLDRQHQRMLVQAVGQLEAMPHCQQVKALREHRCGYRLRVGDYRV 64

Query: 61 FFNFDGTVRIVYIEEVSKRDDRTY 84
           F++DG +RIV I+EVSKRD+RTY
Sbjct: 65 LFDWDGGIRIVEIQEVSKRDERTY 88


>ref|ZP_04898399.1| possible bacteriophage protein [Burkholderia pseudomallei Pasteur
          52237]
 gb|EDO95486.1| possible bacteriophage protein [Burkholderia pseudomallei Pasteur
          52237]
          Length = 84

 Score = 91.7 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 50/84 (59%), Positives = 61/84 (72%)

Query: 1  MNSIKWHPRAIKQLMKINRSDQIKIKDATAKLAQMPHCLQVKTLTNHPCQFRLRVGHYRV 60
          MNSI W P+A+KQ+ K++R D   I  A   LA  PHC  VK LTNH  ++RLRVG+YRV
Sbjct: 1  MNSINWSPKALKQVRKLDRKDGATITKAVDSLATFPHCQNVKALTNHEYEYRLRVGNYRV 60

Query: 61 FFNFDGTVRIVYIEEVSKRDDRTY 84
          FFNFDG V +V +EEV KRD+RTY
Sbjct: 61 FFNFDGVVSVVSVEEVKKRDERTY 84


>ref|YP_262806.1| hypothetical protein PFL_5748 [Pseudomonas fluorescens Pf-5]
 gb|AAY94938.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
          Length = 84

 Score = 90.9 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/84 (50%), Positives = 59/84 (70%)

Query: 1  MNSIKWHPRAIKQLMKINRSDQIKIKDATAKLAQMPHCLQVKTLTNHPCQFRLRVGHYRV 60
          MN I W  +A+KQLM+++   Q++++DA A LA MP    VK L+ H   +RLRVG YRV
Sbjct: 1  MNEILWSRKAVKQLMRLHHEHQVQVRDAIALLADMPASGNVKALSGHTYAYRLRVGQYRV 60

Query: 61 FFNFDGTVRIVYIEEVSKRDDRTY 84
           F++DG + IV ++EV KRD+RTY
Sbjct: 61 LFDWDGAIHIVSVQEVKKRDERTY 84


>ref|YP_785832.1| phage protein [Bordetella avium 197N]
 emb|CAJ48919.1| putative phage protein [Bordetella avium 197N]
          Length = 84

 Score = 90.5 bits (223), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 44/84 (52%), Positives = 58/84 (69%)

Query: 1  MNSIKWHPRAIKQLMKINRSDQIKIKDATAKLAQMPHCLQVKTLTNHPCQFRLRVGHYRV 60
          MN+I W  +A KQL K++R  Q  I+D   +L  MP C  +K LT H   +RLRVG+YRV
Sbjct: 1  MNTIHWTLKATKQLRKLDRQHQQAIRDGVDELENMPACKNIKALTKHEYGYRLRVGNYRV 60

Query: 61 FFNFDGTVRIVYIEEVSKRDDRTY 84
           FN+DG ++IV IEE+ KRD+RTY
Sbjct: 61 MFNWDGGIKIVEIEEIRKRDERTY 84