BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3091.p (261 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EGH09492.1| hypothetical protein PSYMP_09865 [Pseudomonas syr... 180 2e-43 gb|EGH50757.1| LmbE-like protein [Pseudomonas syringae Cit 7] 179 3e-43 ref|YP_004153016.1| lmbe family protein [Variovorax paradoxus EP... 178 6e-43 ref|NP_792924.1| hypothetical protein PSPTO_3132 [Pseudomonas sy... 178 7e-43 gb|EGH69989.1| LmbE-like protein [Pseudomonas syringae pv. aceri... 175 6e-42 >gb|EGH09492.1| hypothetical protein PSYMP_09865 [Pseudomonas syringae pv. morsprunorum str. M302280PT] gb|EGH66039.1| hypothetical protein PSYAC_14240 [Pseudomonas syringae pv. actinidiae str. M302091] Length = 257 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 110/243 (45%), Positives = 135/243 (55%), Gaps = 5/243 (2%) Query: 23 HGTAEDVWQSCQRLHALPALELSQLVPARSRAVILAPHPDDETLGCGGLIAQLAGMMREI 82 GT W + RL ALPA+ LVP RAVI+APHPDDE LGCGGL++QLA + R + Sbjct: 14 QGTPLAAWNASARLRALPAITADLLVPPNCRAVIIAPHPDDEILGCGGLMSQLAQLQRNL 73 Query: 83 AVVAVSDGERSHPPSSPLAA-RLPLLRPAESMAALECLGAGQAQI--LRARIPDGQIRQH 139 +++V+DG SHP S+ RL RP ES AL L Q+ R DG + +H Sbjct: 74 LLISVTDGTASHPGSALWPVERLAENRPQESAQALNLLEIPFEQLAWTRGGFADGTLGEH 133 Query: 140 RLELKAWLIAQLRHTDIVFAPWRLDGHPDHETVGEVAAELEHELGCKLVEVPIWGWHWAQ 199 L +L QL TD+VFA W DGHPDHE VG +A G +L EVPIW WHWA Sbjct: 134 EDRLVEFLAQQLGPTDVVFATWAGDGHPDHEAVGRASARACATTGAQLHEVPIWAWHWAD 193 Query: 200 PLGGEFPWGRAHKLAFDAGTGMMKRRALRCYHSQIGSDGE--RDPVLPAGVLAHFVRPYE 257 P PW RA KL D T KR A + + SQ+ D PVLP VL ++P+E Sbjct: 194 PEDERLPWDRARKLLLDPMTLAHKRSAAQAFTSQLQGDPAIGLSPVLPEAVLERLLQPFE 253 Query: 258 VFF 260 V F Sbjct: 254 VVF 256 >gb|EGH50757.1| LmbE-like protein [Pseudomonas syringae Cit 7] Length = 257 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 107/244 (43%), Positives = 135/244 (55%), Gaps = 5/244 (2%) Query: 22 AHGTAEDVWQSCQRLHALPALELSQLVPARSRAVILAPHPDDETLGCGGLIAQLAGMMRE 81 GT+ W + RL+ LPA+ LVP RAVI+APHPDDE L CGGL++QLA + R Sbjct: 13 GQGTSLAAWNASVRLNGLPAITADLLVPTNCRAVIIAPHPDDEVLACGGLMSQLAQLERS 72 Query: 82 IAVVAVSDGERSHPPSSPLAA-RLPLLRPAESMAALECLG--AGQAQILRARIPDGQIRQ 138 + +++V+DG SHP S+ RL RP ES AL LG A + LR DG + + Sbjct: 73 LLLISVTDGTASHPGSTLWPVDRLSRARPEESAEALNRLGIPAEGLEWLRCGFQDGAVAE 132 Query: 139 HRLELKAWLIAQLRHTDIVFAPWRLDGHPDHETVGEVAAELEHELGCKLVEVPIWGWHWA 198 L A+L L D+VFA W DGH DHE VG +A+ G + EVP+W WHWA Sbjct: 133 SEERLVAFLEQHLGPADVVFATWAEDGHSDHEAVGRASAKACATTGAQFYEVPVWAWHWA 192 Query: 199 QPLGGEFPWGRAHKLAFDAGTGMMKRRALRCYHSQIGSDGE--RDPVLPAGVLAHFVRPY 256 P PW RA KL D T KR A + + SQ+ D PVLPA VL +RP+ Sbjct: 193 DPEDERLPWDRARKLLLDPVTLAHKRNAAQAFTSQLQGDPAIGLSPVLPAAVLERLLRPF 252 Query: 257 EVFF 260 EV F Sbjct: 253 EVVF 256 >ref|YP_004153016.1| lmbe family protein [Variovorax paradoxus EPS] gb|ADU34905.1| LmbE family protein [Variovorax paradoxus EPS] Length = 252 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 109/251 (43%), Positives = 139/251 (55%), Gaps = 4/251 (1%) Query: 14 ATARHIDIAHGTAEDVWQSCQRLHALPALELSQLVPARSRAVILAPHPDDETLGCGGLIA 73 A AR GT E W L LPA+ +LVPA +R V++APHPDDE L GGL+A Sbjct: 3 AVARRAIRGDGTTEAEWSRWPGLARLPAIAPKELVPAHARCVVVAPHPDDEVLSVGGLLA 62 Query: 74 QLAGMMREIAVVAVSDGERSHPPSSPLAA-RLPLLRPAESMAALECLGAGQAQILRARIP 132 QLA R + V+AV+DG SH S+ RL RP ES+ AL+CLG + +R +P Sbjct: 63 QLADCGRHVEVIAVTDGTASHRGSTEWPVERLARTRPRESLKALQCLGLA-VEPVRLGLP 121 Query: 133 DGQIRQHRLELKAWLIAQLRHTDIVFAPWRLDGHPDHETVGEVAAELEHELGCKLVEVPI 192 DG I+ R L A L++ LR D+VF WR DGHPDHE GE A G +L EVP+ Sbjct: 122 DGGIKALRAVLAARLVSLLRPGDVVFTTWRQDGHPDHEATGEACALAAASTGARLAEVPV 181 Query: 193 WGWHWAQPLGGEFPWGRAHKLAFDAGTGMMKRRALRCYHSQIGSDGE--RDPVLPAGVLA 250 WGWHW++P PW A +L + KR A+ + SQ+ D PVL A + Sbjct: 182 WGWHWSRPGDMRMPWSHAFRLPLNEDAVRRKRAAVNAFTSQLRRDASTGSGPVLRATTVQ 241 Query: 251 HFVRPYEVFFL 261 RP+EV FL Sbjct: 242 RAARPFEVIFL 252 >ref|NP_792924.1| hypothetical protein PSPTO_3132 [Pseudomonas syringae pv. tomato str. DC3000] ref|ZP_03398554.1| hypothetical protein PSPTOT1_1507 [Pseudomonas syringae pv. tomato T1] ref|ZP_07229627.1| hypothetical protein PsyrptM_01173 [Pseudomonas syringae pv. tomato Max13] ref|ZP_07249919.1| hypothetical protein PsyrptK_00200 [Pseudomonas syringae pv. tomato K40] ref|ZP_07258612.1| hypothetical protein PsyrptN_14585 [Pseudomonas syringae pv. tomato NCPPB 1108] gb|AAO56619.1| conserved domain protein [Pseudomonas syringae pv. tomato str. DC3000] gb|EEB58462.1| hypothetical protein PSPTOT1_1507 [Pseudomonas syringae pv. tomato T1] gb|EGH96586.1| hypothetical protein PLA106_10906 [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 257 Score = 178 bits (452), Expect = 7e-43, Method: Composition-based stats. Identities = 110/243 (45%), Positives = 135/243 (55%), Gaps = 5/243 (2%) Query: 23 HGTAEDVWQSCQRLHALPALELSQLVPARSRAVILAPHPDDETLGCGGLIAQLAGMMREI 82 GT W + RL ALPA+ LVP RAVI+APHPDDE LGCGGL++QLA + R + Sbjct: 14 QGTPLAAWNASARLGALPAITADLLVPPNCRAVIIAPHPDDEILGCGGLMSQLAQLQRNL 73 Query: 83 AVVAVSDGERSHPPSSPLAA-RLPLLRPAESMAALECLGAGQAQI--LRARIPDGQIRQH 139 +++V+DG SHP S+ RL RP ES AL L Q+ R DG + +H Sbjct: 74 LLISVTDGTASHPGSALWPVERLADCRPQESAQALNRLQIPLEQLAWTRGGFADGTLGEH 133 Query: 140 RLELKAWLIAQLRHTDIVFAPWRLDGHPDHETVGEVAAELEHELGCKLVEVPIWGWHWAQ 199 L +L QL TD+VFA W DGHPDHE VG +A G +L EVPIW WHWA Sbjct: 134 EDRLVEFLAQQLGPTDVVFATWAGDGHPDHEAVGRASARACAITGAQLHEVPIWAWHWAD 193 Query: 200 PLGGEFPWGRAHKLAFDAGTGMMKRRALRCYHSQIGSDGE--RDPVLPAGVLAHFVRPYE 257 P PW RA KL D T KR A + + SQ+ D PVLP VL ++P+E Sbjct: 194 PEDERLPWDRARKLLLDPTTLAHKRSAAQAFTSQLQGDPAIGLAPVLPEAVLERLLQPFE 253 Query: 258 VFF 260 V F Sbjct: 254 VVF 256 >gb|EGH69989.1| LmbE-like protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 257 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 104/244 (42%), Positives = 134/244 (54%), Gaps = 5/244 (2%) Query: 22 AHGTAEDVWQSCQRLHALPALELSQLVPARSRAVILAPHPDDETLGCGGLIAQLAGMMRE 81 GT+ W + RLH LP + LVP RAVI+APHPDDE L CGGL++QLA + R Sbjct: 13 GQGTSLAAWNASTRLHGLPVITADLLVPTNCRAVIIAPHPDDEVLACGGLMSQLAQLERN 72 Query: 82 IAVVAVSDGERSHPPSSPLAA-RLPLLRPAESMAALECLG--AGQAQILRARIPDGQIRQ 138 + +++V+DG SHP S+ RL RP ES AL LG A + + LR + DG + Sbjct: 73 LLLISVTDGTASHPGSALWPVDRLSKARPEESAEALNRLGIPAERLEWLRGGLQDGAVAA 132 Query: 139 HRLELKAWLIAQLRHTDIVFAPWRLDGHPDHETVGEVAAELEHELGCKLVEVPIWGWHWA 198 +L +L L D+VFA W DGH DHE VG +A+ G + EVP+W WHWA Sbjct: 133 AEDQLVTFLEQHLGPADVVFATWAEDGHSDHEAVGRASAKACASTGAQFHEVPVWAWHWA 192 Query: 199 QPLGGEFPWGRAHKLAFDAGTGMMKRRALRCYHSQIGSDGE--RDPVLPAGVLAHFVRPY 256 P PW RA KL D T KR A + + SQ+ D PVLP VL ++P+ Sbjct: 193 DPEDQRLPWDRARKLLLDPVTLAHKRNAAQAFTSQLQGDPAIGLSPVLPDAVLERLLQPF 252 Query: 257 EVFF 260 EV F Sbjct: 253 EVVF 256