BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3084.p (413 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774860.1| homoserine kinase type II protein [Herbaspir... 602 e-170 ref|YP_001099194.1| serine/threonine protein kinase [Herminiimon... 547 e-153 ref|YP_001352544.1| serine/threonine protein kinase [Janthinobac... 545 e-153 ref|YP_004753870.1| YihE protein, required for LPS synthesis [Co... 522 e-146 ref|ZP_08275326.1| YihE protein, required for LPS synthesis [Oxa... 518 e-145 >ref|YP_003774860.1| homoserine kinase type II protein [Herbaspirillum seropedicae SmR1] gb|ADJ62952.1| homoserine kinase type II protein [Herbaspirillum seropedicae SmR1] Length = 336 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 294/337 (87%), Positives = 317/337 (94%), Gaps = 1/337 (0%) Query: 77 MNSPAQSADLPDATSFATLSPDTVLDALDGLGLYGDGRLLALNSYENRVYQVGMEDGPPL 136 MN A + D PDATSFATLSPDTVLDAL GLYGDGRLLALNSYENRVYQVGME+GPPL Sbjct: 1 MNQSA-APDQPDATSFATLSPDTVLDALAAQGLYGDGRLLALNSYENRVYQVGMEEGPPL 59 Query: 137 VAKFYRPLRWSDEQILEEHAFSQELADEEVPVVPAMRLDNGATLHRHAGFRFAVFRRHGG 196 VAKFYRPLRW+DEQILEEHAFSQELAD+EVPVVPAMRL+NG TLHRHAGFRFAVFRRHGG Sbjct: 60 VAKFYRPLRWTDEQILEEHAFSQELADDEVPVVPAMRLENGRTLHRHAGFRFAVFRRHGG 119 Query: 197 RAPELDDADTLERLGRFIGRIHAVGLQRPFTHRPALNIATFGEEPRDYLLANDFIPMDVL 256 RAPELDDADTLERLGRFIGRIHAVGL++PF HRPAL+ A+FGEEPRD+LLA+DFIPMDV Sbjct: 120 RAPELDDADTLERLGRFIGRIHAVGLRQPFVHRPALDQASFGEEPRDWLLAHDFIPMDVA 179 Query: 257 ASYKSTVDLALDGVRRCFDRAGDIKQLRLHGDCHVGNVLWTDAGPHFVDFDDSRSGPAIQ 316 ++++TV+ AL GV+RC++RAG+I+ LRLHGDCHVGNVLWTDAGPHFVDFDDSRSGPA+Q Sbjct: 180 TAWRTTVEQALAGVQRCYERAGEIRTLRLHGDCHVGNVLWTDAGPHFVDFDDSRSGPAVQ 239 Query: 317 DLWMLLSGERGEMVRQLSDLLAGYESFCEFEPRELYLIEALRTLRLIHYSAWLARRWDDP 376 DLWMLLSGER EMV QL+DLLAGYESFCEFEPRELYLIEALRTLRLIHYSAWLARRWDDP Sbjct: 240 DLWMLLSGERREMVGQLADLLAGYESFCEFEPRELYLIEALRTLRLIHYSAWLARRWDDP 299 Query: 377 AFPVAFPWFNTQRYWQDRILELREQIALMDEPPLWPV 413 AFP AFPWFNTQRYWQDRILELREQIALMDE PLWPV Sbjct: 300 AFPAAFPWFNTQRYWQDRILELREQIALMDEAPLWPV 336 >ref|YP_001099194.1| serine/threonine protein kinase [Herminiimonas arsenicoxydans] emb|CAL61067.1| protein RdoA [Herminiimonas arsenicoxydans] Length = 330 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 262/321 (81%), Positives = 284/321 (88%) Query: 91 SFATLSPDTVLDALDGLGLYGDGRLLALNSYENRVYQVGMEDGPPLVAKFYRPLRWSDEQ 150 SFATL+PD VLDAL+ +GLY DGRLLALNSYENRVYQ+G+EDGPPLVAKFYRP RWSD Sbjct: 8 SFATLTPDCVLDALESVGLYSDGRLLALNSYENRVYQIGIEDGPPLVAKFYRPARWSDAA 67 Query: 151 ILEEHAFSQELADEEVPVVPAMRLDNGATLHRHAGFRFAVFRRHGGRAPELDDADTLERL 210 ILEEHAF +L + E+PVVPAM L NG TLH +GFRFAVF RHGGRAPELDD TLE L Sbjct: 68 ILEEHAFVAKLVEREIPVVPAMTLANGKTLHEFSGFRFAVFARHGGRAPELDDPATLEWL 127 Query: 211 GRFIGRIHAVGLQRPFTHRPALNIATFGEEPRDYLLANDFIPMDVLASYKSTVDLALDGV 270 GRFIGRIHAVG + F HRPALNIATFGEEPRDYLLAN+FIP D+L +Y+S + ALDGV Sbjct: 128 GRFIGRIHAVGALQTFEHRPALNIATFGEEPRDYLLANNFIPPDLLDAYRSVIAQALDGV 187 Query: 271 RRCFDRAGDIKQLRLHGDCHVGNVLWTDAGPHFVDFDDSRSGPAIQDLWMLLSGERGEMV 330 RRCFDRAGD+ LRLHGDCH GNVLWTDAGPHFVDFDDSR GPAIQDLWMLLSGER +MV Sbjct: 188 RRCFDRAGDVSILRLHGDCHCGNVLWTDAGPHFVDFDDSRMGPAIQDLWMLLSGERRDMV 247 Query: 331 RQLSDLLAGYESFCEFEPRELYLIEALRTLRLIHYSAWLARRWDDPAFPVAFPWFNTQRY 390 RQLSDLLAGYE F +F+ REL+LIEALRTLRLIHY+AWLARRWDDPAFPVAFPWFNTQRY Sbjct: 248 RQLSDLLAGYEDFADFDVRELHLIEALRTLRLIHYAAWLARRWDDPAFPVAFPWFNTQRY 307 Query: 391 WQDRILELREQIALMDEPPLW 411 WQDRILELREQ+ALMDE PLW Sbjct: 308 WQDRILELREQVALMDEAPLW 328 >ref|YP_001352544.1| serine/threonine protein kinase [Janthinobacterium sp. Marseille] gb|ABR89404.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 330 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 259/321 (80%), Positives = 281/321 (87%) Query: 91 SFATLSPDTVLDALDGLGLYGDGRLLALNSYENRVYQVGMEDGPPLVAKFYRPLRWSDEQ 150 SF+TL+PD VLDAL+ +GLY DGRLLALNSYENRVYQVGMEDGPPLVAKFYRP RW+D Sbjct: 8 SFSTLTPDCVLDALESVGLYSDGRLLALNSYENRVYQVGMEDGPPLVAKFYRPARWTDAA 67 Query: 151 ILEEHAFSQELADEEVPVVPAMRLDNGATLHRHAGFRFAVFRRHGGRAPELDDADTLERL 210 ILEEHAF EL + E+PVVPA L NG TLH AGFRFAVF RHGGRAPELDD TLE L Sbjct: 68 ILEEHAFVHELVESEIPVVPATTLANGKTLHEFAGFRFAVFARHGGRAPELDDPATLEWL 127 Query: 211 GRFIGRIHAVGLQRPFTHRPALNIATFGEEPRDYLLANDFIPMDVLASYKSTVDLALDGV 270 GRFIGRIHAVG + F HRPALNI TFGEEPRDYLLA++FIP D+L +Y+S V ALDGV Sbjct: 128 GRFIGRIHAVGALKNFEHRPALNIQTFGEEPRDYLLAHNFIPPDLLEAYRSVVTQALDGV 187 Query: 271 RRCFDRAGDIKQLRLHGDCHVGNVLWTDAGPHFVDFDDSRSGPAIQDLWMLLSGERGEMV 330 RRC+DRAGD++ RLHGDCH GNVLWTDAGPHFVDFDDSRSGPAIQDLWMLLSGER +MV Sbjct: 188 RRCYDRAGDVRSTRLHGDCHCGNVLWTDAGPHFVDFDDSRSGPAIQDLWMLLSGERRDMV 247 Query: 331 RQLSDLLAGYESFCEFEPRELYLIEALRTLRLIHYSAWLARRWDDPAFPVAFPWFNTQRY 390 RQ +DLL GYE F EF+ REL+LIEALRTLRLIHY+AWLARRWDDPAFPVAFPWFNTQRY Sbjct: 248 RQFTDLLVGYEDFAEFDTRELHLIEALRTLRLIHYAAWLARRWDDPAFPVAFPWFNTQRY 307 Query: 391 WQDRILELREQIALMDEPPLW 411 WQDRILELREQ+ALMDE PLW Sbjct: 308 WQDRILELREQVALMDEAPLW 328 >ref|YP_004753870.1| YihE protein, required for LPS synthesis [Collimonas fungivorans Ter331] gb|AEK63047.1| YihE protein, required for LPS synthesis [Collimonas fungivorans Ter331] Length = 341 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 249/338 (73%), Positives = 282/338 (83%) Query: 74 NRRMNSPAQSADLPDATSFATLSPDTVLDALDGLGLYGDGRLLALNSYENRVYQVGMEDG 133 NR + +P SF+TL+PDTVLDALD +GL+GDGRLLALNSYENRVYQ+GME G Sbjct: 2 NRPLALTIADMTIPSPASFSTLTPDTVLDALDSIGLHGDGRLLALNSYENRVYQIGMEQG 61 Query: 134 PPLVAKFYRPLRWSDEQILEEHAFSQELADEEVPVVPAMRLDNGATLHRHAGFRFAVFRR 193 PPLVAKFYRP RWSDE ILEEH F QEL + E+PVV A +G TLH+ GFRFAVF R Sbjct: 62 PPLVAKFYRPQRWSDEAILEEHGFVQELVEREIPVVAAWAAGDGRTLHQFDGFRFAVFPR 121 Query: 194 HGGRAPELDDADTLERLGRFIGRIHAVGLQRPFTHRPALNIATFGEEPRDYLLANDFIPM 253 HGGRAPEL+D+ TLE LGRF+GRIHAVG R + HRP L+I +FGEEP +LLAN F+P Sbjct: 122 HGGRAPELEDSATLEWLGRFLGRIHAVGALRGYQHRPTLDIVSFGEEPSAFLLANGFVPE 181 Query: 254 DVLASYKSTVDLALDGVRRCFDRAGDIKQLRLHGDCHVGNVLWTDAGPHFVDFDDSRSGP 313 D+L +Y+STV ALDGVRRCF+RAG + LRLHGDCH NVLWTDAGPHFVDFDDSR GP Sbjct: 182 DLLEAYRSTVTQALDGVRRCFERAGSVGALRLHGDCHGSNVLWTDAGPHFVDFDDSRMGP 241 Query: 314 AIQDLWMLLSGERGEMVRQLSDLLAGYESFCEFEPRELYLIEALRTLRLIHYSAWLARRW 373 A+QDLWMLLSGER +MV+Q+ LLAGYE FC+F+ RELYLIEALRTLRLIHY+AW+ARRW Sbjct: 242 AVQDLWMLLSGERRDMVQQMGSLLAGYEDFCDFDTRELYLIEALRTLRLIHYAAWIARRW 301 Query: 374 DDPAFPVAFPWFNTQRYWQDRILELREQIALMDEPPLW 411 DDPAF VAFPWFNTQRYWQDR+LELREQIALMDEPPLW Sbjct: 302 DDPAFAVAFPWFNTQRYWQDRVLELREQIALMDEPPLW 339 >ref|ZP_08275326.1| YihE protein, required for LPS synthesis [Oxalobacteraceae bacterium IMCC9480] gb|EGF31205.1| YihE protein, required for LPS synthesis [Oxalobacteraceae bacterium IMCC9480] Length = 329 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 247/324 (76%), Positives = 282/324 (87%) Query: 87 PDATSFATLSPDTVLDALDGLGLYGDGRLLALNSYENRVYQVGMEDGPPLVAKFYRPLRW 146 P SFA LSPD VLDALD +GL+GDGRLLALNSYENRVYQ+G++DGPP+VAKFYRP RW Sbjct: 4 PSIPSFADLSPDLVLDALDSIGLHGDGRLLALNSYENRVYQIGIDDGPPVVAKFYRPGRW 63 Query: 147 SDEQILEEHAFSQELADEEVPVVPAMRLDNGATLHRHAGFRFAVFRRHGGRAPELDDADT 206 SD I EEHAF +EL +E+PVV A RL +G +LH GFRFAVF RHGGRAPELDD DT Sbjct: 64 SDAAIREEHAFVEELVAQEIPVVSATRLGDGNSLHTLDGFRFAVFARHGGRAPELDDPDT 123 Query: 207 LERLGRFIGRIHAVGLQRPFTHRPALNIATFGEEPRDYLLANDFIPMDVLASYKSTVDLA 266 LE +GRFIGRIHAVG +PF RP L+I +FG EPR +LLA+DFIP ++LA+++S +A Sbjct: 124 LEWMGRFIGRIHAVGKLKPFIERPTLDIHSFGTEPRAWLLAHDFIPPELLAAWQSVTTMA 183 Query: 267 LDGVRRCFDRAGDIKQLRLHGDCHVGNVLWTDAGPHFVDFDDSRSGPAIQDLWMLLSGER 326 LDGVRRC+DRAGD+ LRLHGD H GNVLWTDAGPHFVDFDDSR+GPAIQDLWM+LSGER Sbjct: 184 LDGVRRCYDRAGDVASLRLHGDVHSGNVLWTDAGPHFVDFDDSRNGPAIQDLWMMLSGER 243 Query: 327 GEMVRQLSDLLAGYESFCEFEPRELYLIEALRTLRLIHYSAWLARRWDDPAFPVAFPWFN 386 +MVRQ+SDLLAGY+ FC+F+PREL+LIEALRTLRL+HYSAWLARRWDDPAFPVAFPWFN Sbjct: 244 ADMVRQMSDLLAGYDDFCDFDPRELHLIEALRTLRLLHYSAWLARRWDDPAFPVAFPWFN 303 Query: 387 TQRYWQDRILELREQIALMDEPPL 410 TQRYWQDRILELREQ+ALMDE PL Sbjct: 304 TQRYWQDRILELREQVALMDEAPL 327