BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3081.p         (234 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001352542.1| oligoribonuclease [Janthinobacterium sp. Mar...   356   2e-96
ref|YP_004753875.1| oligoribonuclease [Collimonas fungivorans Te...   342   2e-92
ref|ZP_08276114.1| Oligoribonuclease [Oxalobacteraceae bacterium...   340   7e-92
ref|YP_003774858.1| oligoribonuclease [Herbaspirillum seropedica...   339   2e-91
ref|YP_001099190.1| oligoribonuclease [Herminiimonas arsenicoxyd...   334   5e-90

>ref|YP_001352542.1| oligoribonuclease [Janthinobacterium sp. Marseille]
 gb|ABR89573.1| oligoribonuclease protein [Janthinobacterium sp. Marseille]
          Length = 195

 Score =  356 bits (913), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 170/196 (86%), Positives = 180/196 (91%), Gaps = 1/196 (0%)

Query: 39  MSQATDNNAAPYAIPARPNEFNLVWVDMEMTGLDPDKDRIIEVAVVVTDPELNVLAEGPV 98
           MSQAT+  ++  A P RPNEFNLVWVDMEMTGLDPDKDRIIEVAVVVTD  LN+L EGPV
Sbjct: 1   MSQATELESSS-AAPIRPNEFNLVWVDMEMTGLDPDKDRIIEVAVVVTDANLNILGEGPV 59

Query: 99  FAIHQSDELLDGMDAWNKGTHGRSGLIDRVKASTVTEEEASAALIAFLKPFVPVGKSPMC 158
           FAIHQSDE+LDGMDAWNKGTHGRSGLIDR+KASTVTE EA  ALI FLK +VP GKSPMC
Sbjct: 60  FAIHQSDEVLDGMDAWNKGTHGRSGLIDRIKASTVTEAEAETALIEFLKKYVPSGKSPMC 119

Query: 159 GNSICQDRRFMVRGMPKLEAFFHYRNLDVSTLKELCRRWKPELASGFKKHQKHTALADIL 218
           GN+ICQDRRFMVRGMPKLEAFFHYRNLDVSTLKELCRRWKPEL +GFKKHQKHTALADIL
Sbjct: 120 GNTICQDRRFMVRGMPKLEAFFHYRNLDVSTLKELCRRWKPELVNGFKKHQKHTALADIL 179

Query: 219 ESIEELKYYREHFIKE 234
           ESIEEL+YYREHFIKE
Sbjct: 180 ESIEELRYYREHFIKE 195


>ref|YP_004753875.1| oligoribonuclease [Collimonas fungivorans Ter331]
 gb|AEK63052.1| Oligoribonuclease [Collimonas fungivorans Ter331]
          Length = 202

 Score =  342 bits (878), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 158/180 (87%), Positives = 171/180 (95%)

Query: 55  RPNEFNLVWVDMEMTGLDPDKDRIIEVAVVVTDPELNVLAEGPVFAIHQSDELLDGMDAW 114
           RPNEFNL+WVDMEMTGL+PD DRIIEVAVVVTDP+LN+LAEGPVFAIHQ+DE++DGMDAW
Sbjct: 23  RPNEFNLIWVDMEMTGLNPDSDRIIEVAVVVTDPQLNILAEGPVFAIHQADEIMDGMDAW 82

Query: 115 NKGTHGRSGLIDRVKASTVTEEEASAALIAFLKPFVPVGKSPMCGNSICQDRRFMVRGMP 174
           NKGTHGRSGLI++VK STVTE EA  ALI FLK +VP GKSPMCGN+ICQDRRFM RGMP
Sbjct: 83  NKGTHGRSGLIEKVKNSTVTESEAELALIEFLKKYVPNGKSPMCGNTICQDRRFMARGMP 142

Query: 175 KLEAFFHYRNLDVSTLKELCRRWKPELASGFKKHQKHTALADILESIEELKYYREHFIKE 234
           KLEAFFHYRNLDVSTLKELCRRWKPELASGFKKHQKHTALADI+ESIEEL+YYREHFIKE
Sbjct: 143 KLEAFFHYRNLDVSTLKELCRRWKPELASGFKKHQKHTALADIIESIEELRYYREHFIKE 202


>ref|ZP_08276114.1| Oligoribonuclease [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF30416.1| Oligoribonuclease [Oxalobacteraceae bacterium IMCC9480]
          Length = 201

 Score =  340 bits (873), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 162/200 (81%), Positives = 175/200 (87%), Gaps = 5/200 (2%)

Query: 39  MSQATDNNAAP-----YAIPARPNEFNLVWVDMEMTGLDPDKDRIIEVAVVVTDPELNVL 93
           MSQ T+   AP      A P R NEFNLVW+DMEMTGLDP+ DRIIEVAVVVTD  LN+L
Sbjct: 1   MSQPTEPQTAPEIATAIATPLRTNEFNLVWLDMEMTGLDPETDRIIEVAVVVTDSNLNIL 60

Query: 94  AEGPVFAIHQSDELLDGMDAWNKGTHGRSGLIDRVKASTVTEEEASAALIAFLKPFVPVG 153
            +GPVFAIHQSD  LDGMD WNKGTHGRSGLI+RVKASTVTE +A AALIAFLK +VP G
Sbjct: 61  GQGPVFAIHQSDAALDGMDNWNKGTHGRSGLIERVKASTVTEADAEAALIAFLKDYVPAG 120

Query: 154 KSPMCGNSICQDRRFMVRGMPKLEAFFHYRNLDVSTLKELCRRWKPELASGFKKHQKHTA 213
           KSPMCGNSICQDRRFM RGMPKLEAFFHYRNLDVSTLKELC+RW+PELASGFKKHQKHTA
Sbjct: 121 KSPMCGNSICQDRRFMARGMPKLEAFFHYRNLDVSTLKELCKRWRPELASGFKKHQKHTA 180

Query: 214 LADILESIEELKYYREHFIK 233
           LADI+ESIEEL+YYREHFI+
Sbjct: 181 LADIIESIEELRYYREHFIQ 200


>ref|YP_003774858.1| oligoribonuclease [Herbaspirillum seropedicae SmR1]
 gb|ADJ62950.1| oligoribonuclease (3'->5' exoribonuclease) protein [Herbaspirillum
           seropedicae SmR1]
          Length = 189

 Score =  339 bits (870), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 165/196 (84%), Positives = 172/196 (87%), Gaps = 7/196 (3%)

Query: 39  MSQATDNNAAPYAIPARPNEFNLVWVDMEMTGLDPDKDRIIEVAVVVTDPELNVLAEGPV 98
           MSQA        A P RPNE NL+WVDMEMTGLDPDKDRIIEVAVVVTD ELNVL EGPV
Sbjct: 1   MSQAP-------AAPVRPNEMNLIWVDMEMTGLDPDKDRIIEVAVVVTDAELNVLGEGPV 53

Query: 99  FAIHQSDELLDGMDAWNKGTHGRSGLIDRVKASTVTEEEASAALIAFLKPFVPVGKSPMC 158
            AIHQSDELLDGMDAWNKGTHGRSGLIDRVKASTVTE +A   +I FLK +VP GKSPMC
Sbjct: 54  LAIHQSDELLDGMDAWNKGTHGRSGLIDRVKASTVTEADAEKQIIEFLKQYVPAGKSPMC 113

Query: 159 GNSICQDRRFMVRGMPKLEAFFHYRNLDVSTLKELCRRWKPELASGFKKHQKHTALADIL 218
           GNSICQDRRFMVRGMPKLE FFHYRNLDVSTLKELC+RWKPE+A+GFKK Q HTALADIL
Sbjct: 114 GNSICQDRRFMVRGMPKLEEFFHYRNLDVSTLKELCKRWKPEIATGFKKRQMHTALADIL 173

Query: 219 ESIEELKYYREHFIKE 234
           ESIEELKYYREHFIKE
Sbjct: 174 ESIEELKYYREHFIKE 189


>ref|YP_001099190.1| oligoribonuclease [Herminiimonas arsenicoxydans]
 emb|CAL61063.1| oligoribonuclease [Herminiimonas arsenicoxydans]
          Length = 198

 Score =  334 bits (857), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 160/198 (80%), Positives = 173/198 (87%), Gaps = 2/198 (1%)

Query: 39  MSQATD--NNAAPYAIPARPNEFNLVWVDMEMTGLDPDKDRIIEVAVVVTDPELNVLAEG 96
           MSQA +   +  P   P RPNEFNLVW+DMEMTGLD D D IIE+AVVVTD ELN++ EG
Sbjct: 1   MSQAAEVIPSVTPSTAPVRPNEFNLVWLDMEMTGLDCDNDCIIEIAVVVTDAELNIIGEG 60

Query: 97  PVFAIHQSDELLDGMDAWNKGTHGRSGLIDRVKASTVTEEEASAALIAFLKPFVPVGKSP 156
           PVFAIHQSDE LD MDAWNKGTHGRSGLI+RVKASTV+E +A   LI FLK +VP GKSP
Sbjct: 61  PVFAIHQSDETLDKMDAWNKGTHGRSGLIERVKASTVSEAQAEEELIEFLKKYVPKGKSP 120

Query: 157 MCGNSICQDRRFMVRGMPKLEAFFHYRNLDVSTLKELCRRWKPELASGFKKHQKHTALAD 216
           MCGNSICQDRRFM RGMPKLEAFFHYRNLDVSTLKELC+RWKPELASGFKKHQKHTALAD
Sbjct: 121 MCGNSICQDRRFMARGMPKLEAFFHYRNLDVSTLKELCKRWKPELASGFKKHQKHTALAD 180

Query: 217 ILESIEELKYYREHFIKE 234
           I+ESIEEL+YYREHFIKE
Sbjct: 181 IIESIEELRYYREHFIKE 198