BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3078.p (315 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774855.1| ATP-binding protein [Herbaspirillum seropedi... 551 e-155 ref|YP_004753877.1| ribosome small subunit-stimulated GTPase Eng... 451 e-125 ref|YP_001352539.1| ribosome-associated GTPase [Janthinobacteriu... 441 e-122 ref|YP_001099187.1| ribosome-associated GTPase [Herminiimonas ar... 436 e-120 ref|ZP_08276188.1| Ribosome small subunit-stimulated GTPase EngC... 426 e-117 >ref|YP_003774855.1| ATP-binding protein [Herbaspirillum seropedicae SmR1] gb|ADJ62947.1| ATP-binding protein [Herbaspirillum seropedicae SmR1] Length = 311 Score = 551 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 284/315 (90%), Positives = 297/315 (94%), Gaps = 4/315 (1%) Query: 1 MGVRKQGARSARAGSATNKAELEQGLVIAAHGRHYLVQAGEQKLNCVTRGKKSDVAVGDH 60 MGVRK A RA LE GLVIAAHGRHYLVQAGE+KL+CVTRGKKSDVAVGD Sbjct: 1 MGVRKHAAARQRA----TPDALEPGLVIAAHGRHYLVQAGEEKLHCVTRGKKSDVAVGDR 56 Query: 61 IRLARTSADQGVVESIDERRTLLYRSDQYKSKLLAANVDQLFIVVATEPSFSDDLVSRSL 120 IRLARTSADQGV+ESIDER+TLLYRSDQYKSKLLAANVDQLFIVVATEPSF+DDLVSR+L Sbjct: 57 IRLARTSADQGVIESIDERKTLLYRSDQYKSKLLAANVDQLFIVVATEPSFTDDLVSRAL 116 Query: 121 VAAESAGVSAHLILNKTDITEALPKTRERLQVYARLGYPVHEVSAKAQPEETRAAFMPLL 180 VAAESAGV+AHLILNKTDIT+ALPKTRERLQVYARLGYPVHEVSAKA P++TRAAF+PLL Sbjct: 117 VAAESAGVAAHLILNKTDITDALPKTRERLQVYARLGYPVHEVSAKAHPDDTRAAFLPLL 176 Query: 181 AGKSTILIGQSGMGKSSIINLIVPDADIATREISAALDTGKHTTTFTRLYQMEQEASIID 240 GKSTILIGQSGMGKSSIINLI+PDADIATREISAALDTGKHTTTFTRLYQME EASIID Sbjct: 177 EGKSTILIGQSGMGKSSIINLIIPDADIATREISAALDTGKHTTTFTRLYQMEGEASIID 236 Query: 241 SPGFQEFGLYQLSEGMLERAFRDFTPYLGKCRFYNCHHLNEPGCAVLEAVQAGEIAGMRH 300 SPGFQEFGLYQLSEGMLERAFRDFTPYLGKCRFYNCHHLNEPGCAVLEAVQAGEIAG+RH Sbjct: 237 SPGFQEFGLYQLSEGMLERAFRDFTPYLGKCRFYNCHHLNEPGCAVLEAVQAGEIAGLRH 296 Query: 301 QLYAQLVHESSQTLY 315 QLYAQLVHESSQTLY Sbjct: 297 QLYAQLVHESSQTLY 311 >ref|YP_004753877.1| ribosome small subunit-stimulated GTPase EngC [Collimonas fungivorans Ter331] gb|AEK63054.1| Ribosome small subunit-stimulated GTPase EngC [Collimonas fungivorans Ter331] Length = 321 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 233/303 (76%), Positives = 262/303 (86%), Gaps = 12/303 (3%) Query: 25 GLVIAAHGRHYLVQAGEQ----KLNCVTRGKKSDVAVGDHIRLARTSADQGVVESIDERR 80 GLVIAAHGRHYLVQA + KL CVTRGKKSDVAVGD ++L TS +QGV+E+IDERR Sbjct: 19 GLVIAAHGRHYLVQATIEGKSLKLQCVTRGKKSDVAVGDRVQLKLTSPNQGVIEAIDERR 78 Query: 81 TLLYRSDQYKSKLLAANVDQLFIVVATEPSFSDDLVSRSLVAAESAGVSAHLILNKTDIT 140 +LLYRSDQYKSKLLAANV QLFIVVATEP F+DDL+SR+LVAAE+AGV+AH++LNKTDI Sbjct: 79 SLLYRSDQYKSKLLAANVTQLFIVVATEPGFADDLISRALVAAEAAGVTAHIVLNKTDIV 138 Query: 141 EALPKTRERLQVYARLGYPVHEVSAKAQPEETRAAFMPLLAGKSTILIGQSGMGKSSIIN 200 EAL KTR+RL +YA LGYPVHEVSA+A PE+T A PLLAG+STILIGQSGMGKSS+IN Sbjct: 139 EALEKTRQRLHMYAALGYPVHEVSARAFPEQTCATLAPLLAGQSTILIGQSGMGKSSLIN 198 Query: 201 LIVPDADIATREISAALDTGKHTTTFTRLYQME--------QEASIIDSPGFQEFGLYQL 252 LIVPDADIA REISAALDTGKHTTTFTRLY+M+ A+IIDSPGFQEFGLYQL Sbjct: 199 LIVPDADIAVREISAALDTGKHTTTFTRLYEMDMADTSLDGHPANIIDSPGFQEFGLYQL 258 Query: 253 SEGMLERAFRDFTPYLGKCRFYNCHHLNEPGCAVLEAVQAGEIAGMRHQLYAQLVHESSQ 312 SEGMLERAF +F+PYLGKC+FYNCHHL EP CAVLEAV+ +IA MRHQLY QL+HESSQ Sbjct: 259 SEGMLERAFVEFSPYLGKCKFYNCHHLIEPSCAVLEAVKENKIAAMRHQLYVQLLHESSQ 318 Query: 313 TLY 315 LY Sbjct: 319 KLY 321 >ref|YP_001352539.1| ribosome-associated GTPase [Janthinobacterium sp. Marseille] gb|ABR89639.1| GTPase EngC [Janthinobacterium sp. Marseille] Length = 296 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 226/295 (76%), Positives = 246/295 (83%) Query: 21 ELEQGLVIAAHGRHYLVQAGEQKLNCVTRGKKSDVAVGDHIRLARTSADQGVVESIDERR 80 EL G VIAAHGRHYLVQ KL CVTRGKKSDVAVGD ++L TSA+QGV+E I ER+ Sbjct: 2 ELITGTVIAAHGRHYLVQTESAKLQCVTRGKKSDVAVGDLVKLKLTSANQGVIEEITERQ 61 Query: 81 TLLYRSDQYKSKLLAANVDQLFIVVATEPSFSDDLVSRSLVAAESAGVSAHLILNKTDIT 140 TLLYRSDQYKSKLLAANV QLFIVVATEP FSDDLVSRSLVAAE+AGV H+ILNK D+ Sbjct: 62 TLLYRSDQYKSKLLAANVTQLFIVVATEPGFSDDLVSRSLVAAEAAGVKVHIILNKIDVV 121 Query: 141 EALPKTRERLQVYARLGYPVHEVSAKAQPEETRAAFMPLLAGKSTILIGQSGMGKSSIIN 200 +L KTR+R+ YA LGYPVHEVSA QPE T AA +PLL G STILIGQSGMGKSSIIN Sbjct: 122 ASLEKTRQRVAFYAGLGYPVHEVSATTQPEATCAALLPLLKGHSTILIGQSGMGKSSIIN 181 Query: 201 LIVPDADIATREISAALDTGKHTTTFTRLYQMEQEASIIDSPGFQEFGLYQLSEGMLERA 260 LIVPDADIA REISAALDTGKHTTTFTRLY +++E SIIDSPGFQEFGLY L+EGMLERA Sbjct: 182 LIVPDADIAVREISAALDTGKHTTTFTRLYVIDEETSIIDSPGFQEFGLYHLTEGMLERA 241 Query: 261 FRDFTPYLGKCRFYNCHHLNEPGCAVLEAVQAGEIAGMRHQLYAQLVHESSQTLY 315 F +F YLG C+FYNCHH NEP CA+ AV AG IA MRH LY QL+HESSQ LY Sbjct: 242 FPEFASYLGHCKFYNCHHSNEPECAIRTAVAAGAIAPMRHALYLQLLHESSQKLY 296 >ref|YP_001099187.1| ribosome-associated GTPase [Herminiimonas arsenicoxydans] emb|CAL61060.1| putative GTPase EngC [Herminiimonas arsenicoxydans] Length = 298 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 222/292 (76%), Positives = 245/292 (83%) Query: 24 QGLVIAAHGRHYLVQAGEQKLNCVTRGKKSDVAVGDHIRLARTSADQGVVESIDERRTLL 83 QG VIAAHGRHYLVQ KL CVTRGKKSDVAVGD + L TSA+QGV+E+I ER+TLL Sbjct: 7 QGRVIAAHGRHYLVQTDTAKLQCVTRGKKSDVAVGDLVDLQLTSANQGVIEAITERKTLL 66 Query: 84 YRSDQYKSKLLAANVDQLFIVVATEPSFSDDLVSRSLVAAESAGVSAHLILNKTDITEAL 143 YRSDQYKSKLLAANV QLFIVVATEP FSDDLVSRSLVAAE+AGVS H+ILNK D+ +L Sbjct: 67 YRSDQYKSKLLAANVTQLFIVVATEPGFSDDLVSRSLVAAEAAGVSVHIILNKIDVVASL 126 Query: 144 PKTRERLQVYARLGYPVHEVSAKAQPEETRAAFMPLLAGKSTILIGQSGMGKSSIINLIV 203 KTR+R+ Y LGYPVHEVSA QPE T AA +PLL G+STILIGQSGMGKSSIINLIV Sbjct: 127 EKTRKRVAFYGGLGYPVHEVSATMQPEATVAALLPLLTGQSTILIGQSGMGKSSIINLIV 186 Query: 204 PDADIATREISAALDTGKHTTTFTRLYQMEQEASIIDSPGFQEFGLYQLSEGMLERAFRD 263 PDADIA REISAALDTGKHTTTFTRLY ++ + IIDSPGFQEFGLY L+EGMLERAF + Sbjct: 187 PDADIAVREISAALDTGKHTTTFTRLYAIDTQTMIIDSPGFQEFGLYHLTEGMLERAFPE 246 Query: 264 FTPYLGKCRFYNCHHLNEPGCAVLEAVQAGEIAGMRHQLYAQLVHESSQTLY 315 F YLGKC+FYNCHH NEP CA+ AV + +IA MRH LY QL+HESSQ LY Sbjct: 247 FEAYLGKCKFYNCHHSNEPECAIRTAVASCDIAPMRHALYLQLLHESSQKLY 298 >ref|ZP_08276188.1| Ribosome small subunit-stimulated GTPase EngC [Oxalobacteraceae bacterium IMCC9480] gb|EGF30343.1| Ribosome small subunit-stimulated GTPase EngC [Oxalobacteraceae bacterium IMCC9480] Length = 304 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 223/290 (76%), Positives = 246/290 (84%), Gaps = 1/290 (0%) Query: 27 VIAAHGRHYLVQAGEQKLNCVTRGKKSDVAVGDHIRLARTSADQGVVESIDERRTLLYRS 86 +IAAHGRHYL A +L CVTRGKKSDVAVGD +R+A TS +QGV+ESI ER++LLYRS Sbjct: 15 IIAAHGRHYLAHADGVRLQCVTRGKKSDVAVGDIVRVALTSPNQGVIESITERKSLLYRS 74 Query: 87 DQYKSKLLAANVDQLFIVVATEPSFSDDLVSRSLVAAESAGVSAHLILNKTDITEALPKT 146 DQYKSKLLAANV QLFIVVATEP FSDDLVSRSLVAAE+AGV AHLILNK D+TE+LPKT Sbjct: 75 DQYKSKLLAANVTQLFIVVATEPGFSDDLVSRSLVAAEAAGVQAHLILNKIDVTESLPKT 134 Query: 147 RERLQVYARLGYPVHEVSAKAQPEETRAAFMPLLAGKSTILIGQSGMGKSSIINLIVPDA 206 R RL YARLGYPVHEVSA+A PE A PLL G+STILIGQSGMGKSS+INL+VPDA Sbjct: 135 RTRLAQYARLGYPVHEVSARAAPEAAVATLGPLLQGQSTILIGQSGMGKSSLINLLVPDA 194 Query: 207 DIATREISAALDTGKHTTTFTRLYQM-EQEASIIDSPGFQEFGLYQLSEGMLERAFRDFT 265 DIA REISAALDTGKHTTTFTRLY + + +IIDSPGFQEFGLY LSEGMLERAF +F Sbjct: 195 DIAVREISAALDTGKHTTTFTRLYNIGDTSTAIIDSPGFQEFGLYHLSEGMLERAFPEFE 254 Query: 266 PYLGKCRFYNCHHLNEPGCAVLEAVQAGEIAGMRHQLYAQLVHESSQTLY 315 P LGKC++YNCHHL EP C VL A+ AGEI RH LYAQL+HESSQTLY Sbjct: 255 PLLGKCKYYNCHHLTEPSCTVLAALAAGEILPYRHALYAQLLHESSQTLY 304