BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3070.p         (107 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774530.1| transketolase, C-terminal subunit [Herbaspir...   149   2e-34
ref|YP_004126990.1| transketolase central region protein [Alicyc...   134   6e-30
ref|YP_002945196.1| transketolase [Variovorax paradoxus S110] >g...   130   5e-29
ref|YP_004847922.1| transketolase central region [Pseudogulbenki...   130   6e-29
ref|ZP_03698000.1| Transketolase central region [Lutiella nitrof...   130   7e-29

>ref|YP_003774530.1| transketolase, C-terminal subunit [Herbaspirillum seropedicae
          SmR1]
 gb|ADJ62622.1| transketolase, C-terminal subunit, protein [Herbaspirillum
          seropedicae SmR1]
          Length = 334

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 76/79 (96%), Positives = 78/79 (98%)

Query: 19 MNTVAEKKPRLTTSAMIASIAAEGQRVQAAPFGKALVEYAADRPEIVGLTADLAKYTDLH 78
          MNTVA+KKPRLTTSAMIASIAAEGQRVQAAPFGKALV+YAADRPEIVGLTADLAKYTDLH
Sbjct: 1  MNTVADKKPRLTTSAMIASIAAEGQRVQAAPFGKALVDYAADRPEIVGLTADLAKYTDLH 60

Query: 79 LFQKAYPERFFQMGMAEQF 97
          LFQKAYPERFFQMGMAEQ 
Sbjct: 61 LFQKAYPERFFQMGMAEQL 79


>ref|YP_004126990.1| transketolase central region protein [Alicycliphilus
          denitrificans BC]
 ref|YP_004388435.1| 1-deoxy-D-xylulose-5-phosphate synthase [Alicycliphilus
          denitrificans K601]
 gb|ADV00103.1| Transketolase central region protein [Alicycliphilus
          denitrificans BC]
 gb|AEB84919.1| 1-deoxy-D-xylulose-5-phosphate synthase [Alicycliphilus
          denitrificans K601]
          Length = 334

 Score =  134 bits (336), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 68/79 (86%), Positives = 73/79 (92%)

Query: 19 MNTVAEKKPRLTTSAMIASIAAEGQRVQAAPFGKALVEYAADRPEIVGLTADLAKYTDLH 78
          MNT  +KKPRLTTSAMIASIA EGQRV+AAPFGKALVEYAA RPE+VG+TADLAKYTDLH
Sbjct: 1  MNTATQKKPRLTTSAMIASIADEGQRVKAAPFGKALVEYAATRPEVVGMTADLAKYTDLH 60

Query: 79 LFQKAYPERFFQMGMAEQF 97
          LF +AYPERFFQMGMAEQ 
Sbjct: 61 LFAQAYPERFFQMGMAEQL 79


>ref|YP_002945196.1| transketolase [Variovorax paradoxus S110]
 gb|ACS19930.1| Transketolase central region [Variovorax paradoxus S110]
          Length = 332

 Score =  130 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 66/79 (83%), Positives = 69/79 (87%)

Query: 19 MNTVAEKKPRLTTSAMIASIAAEGQRVQAAPFGKALVEYAADRPEIVGLTADLAKYTDLH 78
          M+T  EKKPRLTTSAMIASIA+EGQRV AAPFGKALVE    RPEIVG+TADLAKYTDLH
Sbjct: 1  MSTTTEKKPRLTTSAMIASIASEGQRVTAAPFGKALVELGRSRPEIVGMTADLAKYTDLH 60

Query: 79 LFQKAYPERFFQMGMAEQF 97
          LF K YPERFFQMGMAEQ 
Sbjct: 61 LFAKEYPERFFQMGMAEQL 79


>ref|YP_004847922.1| transketolase central region [Pseudogulbenkiania sp. NH8B]
 dbj|BAK77508.1| transketolase central region [Pseudogulbenkiania sp. NH8B]
          Length = 332

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 68/79 (86%), Positives = 73/79 (92%), Gaps = 1/79 (1%)

Query: 19 MNTVAEKKPRLTTSAMIASIAAEGQRVQAAPFGKALVEYAADRPEIVGLTADLAKYTDLH 78
          MNT AEKKPRLTTSAMIASIAAEGQRV++APFG ALVE AA RP+IVG+TADLAKYTDLH
Sbjct: 1  MNT-AEKKPRLTTSAMIASIAAEGQRVKSAPFGNALVELAASRPDIVGMTADLAKYTDLH 59

Query: 79 LFQKAYPERFFQMGMAEQF 97
          LF KAYP+RFFQMGMAEQ 
Sbjct: 60 LFAKAYPQRFFQMGMAEQL 78


>ref|ZP_03698000.1| Transketolase central region [Lutiella nitroferrum 2002]
 gb|EEG08742.1| Transketolase central region [Lutiella nitroferrum 2002]
          Length = 332

 Score =  130 bits (327), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 68/79 (86%), Positives = 73/79 (92%), Gaps = 1/79 (1%)

Query: 19 MNTVAEKKPRLTTSAMIASIAAEGQRVQAAPFGKALVEYAADRPEIVGLTADLAKYTDLH 78
          MNT AEKKPRLTTSAMIASIAAEGQRV++APFG ALVE AA RP+IVG+TADLAKYTDLH
Sbjct: 1  MNT-AEKKPRLTTSAMIASIAAEGQRVKSAPFGNALVELAASRPDIVGMTADLAKYTDLH 59

Query: 79 LFQKAYPERFFQMGMAEQF 97
          LF KAYP+RFFQMGMAEQ 
Sbjct: 60 LFAKAYPQRFFQMGMAEQL 78