BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3069.p (281 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774531.1| transketolase alpha subunit [Herbaspirillum ... 544 e-153 ref|YP_001793290.1| transketolase domain-containing protein [Lep... 488 e-136 ref|YP_004847923.1| transketolase domain containing protein [Pse... 468 e-130 ref|ZP_03697999.1| Transketolase domain protein [Lutiella nitrof... 466 e-129 ref|YP_002945195.1| transketolase [Variovorax paradoxus S110] >g... 457 e-126 >ref|YP_003774531.1| transketolase alpha subunit [Herbaspirillum seropedicae SmR1] gb|ADJ62623.1| transketolase alpha subunit protein [Herbaspirillum seropedicae SmR1] Length = 281 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 272/281 (96%), Positives = 279/281 (99%) Query: 1 MSDNLANLRASAYRIRRNAVRMGEVQGQGYIGQALGWADVLAVAYKHAMQLRPDDPEWSG 60 MSDNLANLRASAYRIRRNAVRMGEVQGQGYIGQALGWADVLAVAYKHAM LRPDDP+WSG Sbjct: 1 MSDNLANLRASAYRIRRNAVRMGEVQGQGYIGQALGWADVLAVAYKHAMSLRPDDPQWSG 60 Query: 61 RDRFLLSHGHYAIALYAALIEAGIVPDEELESYGSDDSRLPMSGMATYTPGMEISGGSLG 120 RDRFLLSHGHYAIALYAALIEAGIVPDEEL+SYGSDDSRLPMSGMATYTPGMEISGGSLG Sbjct: 61 RDRFLLSHGHYAIALYAALIEAGIVPDEELDSYGSDDSRLPMSGMATYTPGMEISGGSLG 120 Query: 121 QGLAIGVGMALGLRYNHNPAFVYNSMSDGELDEGSTWEAAMGAAHHQLGNLICLVDINNQ 180 QGLAIGVGMALGLRYN+NPAFVYNSMSDGELDEGSTWEAAMGAAHHQLGNLICLVDINNQ Sbjct: 121 QGLAIGVGMALGLRYNNNPAFVYNSMSDGELDEGSTWEAAMGAAHHQLGNLICLVDINNQ 180 Query: 181 QADGPSSKVMGFEPLADKWASFGWYVQRVDGNDLAAVVRAFDNARHLKDAKPRVILFDTL 240 QADGPS K+MGFEPLADKWA+FGWYVQRVDGNDLAAVV+AFDNAR+LKDAKPRVILFDTL Sbjct: 181 QADGPSGKIMGFEPLADKWAAFGWYVQRVDGNDLAAVVQAFDNARNLKDAKPRVILFDTL 240 Query: 241 MGKGVPFLEQREKNHFIRVDPPEWQQALSILDQSYQQGSQA 281 MGKGVPFLEQREKNHFIRVDPPEWQQALSILDQSYQQGSQA Sbjct: 241 MGKGVPFLEQREKNHFIRVDPPEWQQALSILDQSYQQGSQA 281 >ref|YP_001793290.1| transketolase domain-containing protein [Leptothrix cholodnii SP-6] gb|ACB36525.1| Transketolase domain protein [Leptothrix cholodnii SP-6] Length = 287 Score = 488 bits (1255), Expect = e-136, Method: Composition-based stats. Identities = 238/277 (85%), Positives = 258/277 (93%) Query: 5 LANLRASAYRIRRNAVRMGEVQGQGYIGQALGWADVLAVAYKHAMQLRPDDPEWSGRDRF 64 LA LR AYRIRRNA+RMGEVQGQGYIGQALGWADVLAVAY HA+ LRPD+PEW GRDRF Sbjct: 11 LAELRQVAYRIRRNALRMGEVQGQGYIGQALGWADVLAVAYGHALNLRPDEPEWEGRDRF 70 Query: 65 LLSHGHYAIALYAALIEAGIVPDEELESYGSDDSRLPMSGMATYTPGMEISGGSLGQGLA 124 LLSHGHYAIA YAALIEAGI+P+ ELE+YGSDDSRLPMSGMATYTPGMEISGGSLGQGLA Sbjct: 71 LLSHGHYAIASYAALIEAGIIPESELETYGSDDSRLPMSGMATYTPGMEISGGSLGQGLA 130 Query: 125 IGVGMALGLRYNHNPAFVYNSMSDGELDEGSTWEAAMGAAHHQLGNLICLVDINNQQADG 184 IGVGMALGL++ NPAF+YNSMSDGELDEG+ WEAAMGAAHH+L NLICL+DINNQQADG Sbjct: 131 IGVGMALGLKHKKNPAFIYNSMSDGELDEGAVWEAAMGAAHHRLDNLICLIDINNQQADG 190 Query: 185 PSSKVMGFEPLADKWASFGWYVQRVDGNDLAAVVRAFDNARHLKDAKPRVILFDTLMGKG 244 PSSKVMGFEPLADKWA+FGW+VQRVDGNDLAAV+ AFD AR+L +AKPRVILFDTLMGKG Sbjct: 191 PSSKVMGFEPLADKWAAFGWHVQRVDGNDLAAVLEAFDAARNLTEAKPRVILFDTLMGKG 250 Query: 245 VPFLEQREKNHFIRVDPPEWQQALSILDQSYQQGSQA 281 VPFLE R+KNHFIRVDPPEWQQAL ILDQS +G+QA Sbjct: 251 VPFLETRDKNHFIRVDPPEWQQALQILDQSQAEGAQA 287 >ref|YP_004847923.1| transketolase domain containing protein [Pseudogulbenkiania sp. NH8B] dbj|BAK77509.1| transketolase domain protein [Pseudogulbenkiania sp. NH8B] Length = 284 Score = 468 bits (1203), Expect = e-130, Method: Composition-based stats. Identities = 226/266 (84%), Positives = 248/266 (93%) Query: 12 AYRIRRNAVRMGEVQGQGYIGQALGWADVLAVAYKHAMQLRPDDPEWSGRDRFLLSHGHY 71 AYRIRR A++MGEVQGQGY+GQALGWADVLAVAY HAM RP++PEW GRDRFLLSHGHY Sbjct: 16 AYRIRRYALQMGEVQGQGYVGQALGWADVLAVAYGHAMNYRPEEPEWEGRDRFLLSHGHY 75 Query: 72 AIALYAALIEAGIVPDEELESYGSDDSRLPMSGMATYTPGMEISGGSLGQGLAIGVGMAL 131 AIALYAALIEAGI+P+ ELE+YGSDDSRLPMSGMATYTPGMEISGGSLGQGL IGVGMAL Sbjct: 76 AIALYAALIEAGIIPESELETYGSDDSRLPMSGMATYTPGMEISGGSLGQGLPIGVGMAL 135 Query: 132 GLRYNHNPAFVYNSMSDGELDEGSTWEAAMGAAHHQLGNLICLVDINNQQADGPSSKVMG 191 GLR+ +NPAFVYNSMSDGELDEGSTWEAAM AAHH L NLICLVDINNQQADGPSSKV+G Sbjct: 136 GLRFKNNPAFVYNSMSDGELDEGSTWEAAMSAAHHGLSNLICLVDINNQQADGPSSKVLG 195 Query: 192 FEPLADKWASFGWYVQRVDGNDLAAVVRAFDNARHLKDAKPRVILFDTLMGKGVPFLEQR 251 FEPLADKWA+FGW+VQRVDGNDL AV+ AFD AR+L+ A+PRVILFDTLMGKG+PFLEQR Sbjct: 196 FEPLADKWAAFGWHVQRVDGNDLPAVIEAFDTARNLQTAQPRVILFDTLMGKGIPFLEQR 255 Query: 252 EKNHFIRVDPPEWQQALSILDQSYQQ 277 +KNHFIRV+ EWQQA++ILDQS QQ Sbjct: 256 DKNHFIRVEAAEWQQAITILDQSQQQ 281 >ref|ZP_03697999.1| Transketolase domain protein [Lutiella nitroferrum 2002] gb|EEG08741.1| Transketolase domain protein [Lutiella nitroferrum 2002] Length = 284 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 225/266 (84%), Positives = 248/266 (93%) Query: 12 AYRIRRNAVRMGEVQGQGYIGQALGWADVLAVAYKHAMQLRPDDPEWSGRDRFLLSHGHY 71 AYRIRR A++MGEVQGQGY+GQALGWADVLAVAY HAM RP++PEW GRDRFLLSHGHY Sbjct: 16 AYRIRRYALQMGEVQGQGYVGQALGWADVLAVAYGHAMNYRPEEPEWEGRDRFLLSHGHY 75 Query: 72 AIALYAALIEAGIVPDEELESYGSDDSRLPMSGMATYTPGMEISGGSLGQGLAIGVGMAL 131 AIALYAALIEAGI+P+ ELE+YGSDDSRLPMSGMATYTPGMEISGGSLGQGL IGVGMAL Sbjct: 76 AIALYAALIEAGIIPESELETYGSDDSRLPMSGMATYTPGMEISGGSLGQGLPIGVGMAL 135 Query: 132 GLRYNHNPAFVYNSMSDGELDEGSTWEAAMGAAHHQLGNLICLVDINNQQADGPSSKVMG 191 GLR+ +NPAFVYNSMSDGELDEGSTWEAAM AAHH L NLICLVDINNQQADGPSSKV+G Sbjct: 136 GLRFKNNPAFVYNSMSDGELDEGSTWEAAMSAAHHGLSNLICLVDINNQQADGPSSKVLG 195 Query: 192 FEPLADKWASFGWYVQRVDGNDLAAVVRAFDNARHLKDAKPRVILFDTLMGKGVPFLEQR 251 FEPLADKWA+FGW+VQR+DGNDL AV+ AFD AR+L+ A+PRVILFDTLMGKG+PFLEQR Sbjct: 196 FEPLADKWAAFGWHVQRIDGNDLPAVIEAFDTARNLQTAQPRVILFDTLMGKGIPFLEQR 255 Query: 252 EKNHFIRVDPPEWQQALSILDQSYQQ 277 +KNHFIRV+ EWQQA++ILDQS QQ Sbjct: 256 DKNHFIRVEAAEWQQAIAILDQSQQQ 281 >ref|YP_002945195.1| transketolase [Variovorax paradoxus S110] gb|ACS19929.1| Transketolase domain protein [Variovorax paradoxus S110] Length = 279 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 225/279 (80%), Positives = 251/279 (89%), Gaps = 1/279 (0%) Query: 1 MSDNLANLRASAYRIRRNAVRMGEVQGQGYIGQALGWADVLAVAYKHAMQLRPDDPEWSG 60 MSD L+ L+ SA RIR A+RMGEVQGQGYIGQALGWADVLAVAYKHA+ RP++P+W G Sbjct: 1 MSD-LSTLQQSARRIRAYALRMGEVQGQGYIGQALGWADVLAVAYKHALAYRPEEPKWEG 59 Query: 61 RDRFLLSHGHYAIALYAALIEAGIVPDEELESYGSDDSRLPMSGMATYTPGMEISGGSLG 120 RDRFLLSHGHYAIA YAALIEAGI+P+EELE+YGSDDSRLPMSGMATYTPGME+SGGSLG Sbjct: 60 RDRFLLSHGHYAIAFYAALIEAGIIPEEELETYGSDDSRLPMSGMATYTPGMEMSGGSLG 119 Query: 121 QGLAIGVGMALGLRYNHNPAFVYNSMSDGELDEGSTWEAAMGAAHHQLGNLICLVDINNQ 180 QGL I VGMALGLR +NPAFVYNSMSDGELDEGSTWEAAMGAAHH+L NLICLVDINNQ Sbjct: 120 QGLPIAVGMALGLRLKNNPAFVYNSMSDGELDEGSTWEAAMGAAHHRLPNLICLVDINNQ 179 Query: 181 QADGPSSKVMGFEPLADKWASFGWYVQRVDGNDLAAVVRAFDNARHLKDAKPRVILFDTL 240 QADGPS K+MGFEPLA KW +FGW+VQRVDGNDL AV+ AFD AR LK+ KPRVILFDTL Sbjct: 180 QADGPSGKIMGFEPLAAKWEAFGWHVQRVDGNDLPAVMAAFDAARALKEEKPRVILFDTL 239 Query: 241 MGKGVPFLEQREKNHFIRVDPPEWQQALSILDQSYQQGS 279 MG+GVPFLE R+KNHFIRVDPPEWQQA++ +D + +G+ Sbjct: 240 MGRGVPFLETRDKNHFIRVDPPEWQQAIAHVDSAQSEGA 278