BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3067.p (348 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774533.1| TRAP-type C4-dicarboxylate transport system ... 668 0.0 ref|YP_003773939.1| TRAP-type C4-dicarboxylate transport system ... 610 e-172 ref|NP_768810.1| ABC transporter substrate-binding protein [Brad... 460 e-127 ref|YP_001889841.1| TRAP dicarboxylate transporter DctP subunit ... 457 e-126 ref|YP_002499559.1| TRAP dicarboxylate transporter subunit DctP ... 442 e-122 >ref|YP_003774533.1| TRAP-type C4-dicarboxylate transport system periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ62625.1| TRAP-type C4-dicarboxylate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 348 Score = 668 bits (1724), Expect = 0.0, Method: Composition-based stats. Identities = 335/348 (96%), Positives = 344/348 (98%) Query: 1 MTQDNSKPGKTTLSRRQLLKAGAVGAALPLFSIMSRPANAAEFNYKFATGQDPSHPVNKR 60 M QDNSKPGKT++SRRQLLKAGAVGAALPLFSIMSRPANAAEFNYKFATGQDPSHPVNKR Sbjct: 1 MNQDNSKPGKTSVSRRQLLKAGAVGAALPLFSIMSRPANAAEFNYKFATGQDPSHPVNKR 60 Query: 61 AQQAIDRIREATGGRLDIKLFPANQLGSDTDLMSQIRNGGVEFFNQASVVLSTLVPAAGI 120 AQQAIDRIREATGGRLDIKLFPANQLGSDTDLMSQIRNGGVEFFNQASVVLSTLVPAAGI Sbjct: 61 AQQAIDRIREATGGRLDIKLFPANQLGSDTDLMSQIRNGGVEFFNQASVVLSTLVPAAGI 120 Query: 121 VNTGFAFHDYKEVWQAMDGPLGAYVRAQIEKVGLLTMSKPWDNGFRQITTSTKPIKTAGD 180 VNTGFAFHDYKEVWQAMDGPLGAYVRAQIEKVGLLTMSKPWDNGFRQITTSTKPIKTA D Sbjct: 121 VNTGFAFHDYKEVWQAMDGPLGAYVRAQIEKVGLLTMSKPWDNGFRQITTSTKPIKTAAD 180 Query: 181 LKGLKLRVPAAPMLTSLFTALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEV 240 LKGLKLRVPAAPMLTSLF+ALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEV Sbjct: 181 LKGLKLRVPAAPMLTSLFSALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEV 240 Query: 241 QKFCTISNHVWDAYWILGNRRAFEKLPKDIQEIVRRELDKAATDERADIASLAGFARNDL 300 QKFCTISNHVWDAYWILGNRRAFEKLPKDIQEIVRRELDKAATDERADIASL+GFARNDL Sbjct: 241 QKFCTISNHVWDAYWILGNRRAFEKLPKDIQEIVRRELDKAATDERADIASLSGFARNDL 300 Query: 301 QGKGVQIIEADKDSFKAALAQANFYKDMRAKFGDDAWKLLQNAVGSLG 348 QGKGVQIIEADK+SFK ALA+ +FYKD+RAKFGDDAWKLLQN+VGSLG Sbjct: 301 QGKGVQIIEADKNSFKEALARGSFYKDLRAKFGDDAWKLLQNSVGSLG 348 >ref|YP_003773939.1| TRAP-type C4-dicarboxylate transport system periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ62031.1| TRAP-type C4-dicarboxylate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 345 Score = 610 bits (1572), Expect = e-172, Method: Composition-based stats. Identities = 300/344 (87%), Positives = 327/344 (95%) Query: 5 NSKPGKTTLSRRQLLKAGAVGAALPLFSIMSRPANAAEFNYKFATGQDPSHPVNKRAQQA 64 N + K ++RR +LKAGAVGAALPLFSI+SRPA+AAEF+YKFATGQDPSHPVNKRAQ+A Sbjct: 2 NDERAKKQVTRRNMLKAGAVGAALPLFSILSRPASAAEFSYKFATGQDPSHPVNKRAQEA 61 Query: 65 IDRIREATGGRLDIKLFPANQLGSDTDLMSQIRNGGVEFFNQASVVLSTLVPAAGIVNTG 124 IDRIR AT GRL+IKLFPANQLGSDTDLMSQ+RNGGVEFFNQA+ VLSTLVPAAGIVNTG Sbjct: 62 IDRIRNATNGRLEIKLFPANQLGSDTDLMSQVRNGGVEFFNQANTVLSTLVPAAGIVNTG 121 Query: 125 FAFHDYKEVWQAMDGPLGAYVRAQIEKVGLLTMSKPWDNGFRQITTSTKPIKTAGDLKGL 184 FAFHDY VW+AMDGPLGA+VRAQIEKVGLLTMSKPWDNGFRQITTSTKP++ AGD+KGL Sbjct: 122 FAFHDYGAVWKAMDGPLGAHVRAQIEKVGLLTMSKPWDNGFRQITTSTKPVRNAGDVKGL 181 Query: 185 KLRVPAAPMLTSLFTALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEVQKFC 244 KLRVPAAPMLTSLF+ALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEVQKFC Sbjct: 182 KLRVPAAPMLTSLFSALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEVQKFC 241 Query: 245 TISNHVWDAYWILGNRRAFEKLPKDIQEIVRRELDKAATDERADIASLAGFARNDLQGKG 304 TISNHVWDAYWILGNRRAFEKLPKDIQEIVRRELDKAA+DERADIA+ +GFARNDL KG Sbjct: 242 TISNHVWDAYWILGNRRAFEKLPKDIQEIVRRELDKAASDERADIAAFSGFARNDLASKG 301 Query: 305 VQIIEADKDSFKAALAQANFYKDMRAKFGDDAWKLLQNAVGSLG 348 +QI+EADKDSFK ALA+ANFYKDMRAKFG+DAWKLL+ +VG+LG Sbjct: 302 LQIVEADKDSFKEALARANFYKDMRAKFGEDAWKLLEGSVGALG 345 >ref|NP_768810.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC47435.1| blr2170 [Bradyrhizobium japonicum USDA 110] Length = 355 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 221/342 (64%), Positives = 280/342 (81%), Gaps = 5/342 (1%) Query: 6 SKPGKTTLSRRQLLKAGAVGAALPLFSIMSRPANAAEFNYKFATGQDPSHPVNKRAQQAI 65 SKPG ++SRR LL A +PL I++RPA+AAEF YKFATGQDP+HPVN RAQ+AI Sbjct: 18 SKPG--SISRRSLLMAAT---TVPLCGILTRPASAAEFVYKFATGQDPTHPVNIRAQEAI 72 Query: 66 DRIREATGGRLDIKLFPANQLGSDTDLMSQIRNGGVEFFNQASVVLSTLVPAAGIVNTGF 125 DRIREAT GRL+I+LFPANQLGSDT+L++Q+R+GGVEFFNQ+S +L+TLVP+AGIVNTGF Sbjct: 73 DRIREATSGRLEIRLFPANQLGSDTELLTQVRSGGVEFFNQSSSILATLVPSAGIVNTGF 132 Query: 126 AFHDYKEVWQAMDGPLGAYVRAQIEKVGLLTMSKPWDNGFRQITTSTKPIKTAGDLKGLK 185 AF DY VW+AMDG LG Y+RAQI K ++ +SK WDNGFRQ+T+S + ++T DLK + Sbjct: 133 AFADYDSVWKAMDGDLGTYIRAQIAKTPIMAVSKAWDNGFRQVTSSGREVRTPDDLKNFQ 192 Query: 186 LRVPAAPMLTSLFTALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEVQKFCT 245 +RVP AP+LTSLF ALGA PTPINFNEVYS+LQTK+V+GQENPL II+TARLYEVQ C+ Sbjct: 193 IRVPPAPLLTSLFKALGAGPTPINFNEVYSALQTKVVDGQENPLPIIATARLYEVQSTCS 252 Query: 246 ISNHVWDAYWILGNRRAFEKLPKDIQEIVRRELDKAATDERADIASLAGFARNDLQGKGV 305 ++ HVWD YWILGN+RAFE+LPKD+QEIV RELD++A D+RADIA L+ R DL KG+ Sbjct: 253 LTGHVWDGYWILGNKRAFERLPKDVQEIVTRELDRSAVDQRADIAKLSQSLRADLSTKGL 312 Query: 306 QIIEADKDSFKAALAQANFYKDMRAKFGDDAWKLLQNAVGSL 347 + I+ D+ +F+ AL++ +FY D + KFG++AW L+ A G L Sbjct: 313 KFIDVDRAAFRQALSKTSFYADWKGKFGEEAWSHLEKAAGQL 354 >ref|YP_001889841.1| TRAP dicarboxylate transporter DctP subunit [Burkholderia phytofirmans PsJN] gb|ACD20470.1| TRAP dicarboxylate transporter, DctP subunit [Burkholderia phytofirmans PsJN] Length = 347 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 223/348 (64%), Positives = 282/348 (81%), Gaps = 4/348 (1%) Query: 2 TQDNSKPGKTTLSRRQLLKAGA-VGAALPLFSIMSRPANAAEFNYKFATGQDPSHPVNKR 60 T+ N+ G +SRR LKAGA + AA+PL+S+ R A EF+YK ATGQDP+HPVN R Sbjct: 3 TRSNAPQG---ISRRSFLKAGATLSAAVPLWSVSRRAMAAPEFSYKLATGQDPTHPVNIR 59 Query: 61 AQQAIDRIREATGGRLDIKLFPANQLGSDTDLMSQIRNGGVEFFNQASVVLSTLVPAAGI 120 AQ+AI+ IREAT GRLDIKLFP NQLGSDTDL+SQ+RNGGVEFFNQAS +L+TL PAAGI Sbjct: 60 AQEAINHIREATNGRLDIKLFPQNQLGSDTDLLSQVRNGGVEFFNQASSILATLTPAAGI 119 Query: 121 VNTGFAFHDYKEVWQAMDGPLGAYVRAQIEKVGLLTMSKPWDNGFRQITTSTKPIKTAGD 180 VNTGFAF DY VW+AMDG LG Y+R QI K GL+++SK WDNGFRQI++ST+ ++ D Sbjct: 120 VNTGFAFKDYDAVWKAMDGDLGNYIRGQIGKSGLVSVSKVWDNGFRQISSSTRALRAPAD 179 Query: 181 LKGLKLRVPAAPMLTSLFTALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEV 240 LKG K+RVP APMLTSLF AL A P PINFNE+YS+LQT +VEGQENPL II+TA+LYEV Sbjct: 180 LKGFKIRVPQAPMLTSLFKALDAGPAPINFNELYSALQTGVVEGQENPLPIIATAKLYEV 239 Query: 241 QKFCTISNHVWDAYWILGNRRAFEKLPKDIQEIVRRELDKAATDERADIASLAGFARNDL 300 QK+ ++++HVWD YWILGNR A+E+LP +++ IV RE +KAA +RADIA L+G R+DL Sbjct: 240 QKYISLTSHVWDGYWILGNRAAWERLPAEMRTIVTREFEKAAMLQRADIAKLSGSLRDDL 299 Query: 301 QGKGVQIIEADKDSFKAALAQANFYKDMRAKFGDDAWKLLQNAVGSLG 348 + KG+ I+ D++SF+AALA+ +FY D ++K+GD+AW LL+ +VG LG Sbjct: 300 KAKGITFIDVDRESFRAALAKTSFYHDWKSKYGDEAWGLLEKSVGKLG 347 >ref|YP_002499559.1| TRAP dicarboxylate transporter subunit DctP [Methylobacterium nodulans ORS 2060] gb|ACL59256.1| TRAP dicarboxylate transporter, DctP subunit [Methylobacterium nodulans ORS 2060] Length = 338 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 216/337 (64%), Positives = 265/337 (78%), Gaps = 3/337 (0%) Query: 12 TLSRRQLLKAGAVGAALPLFSIMSRPANAAEFNYKFATGQDPSHPVNKRAQQAIDRIREA 71 TLSRR LL AGA A+LPL +I+ RPANAAEF YK ATGQDP+HPVN RAQ+A++RIREA Sbjct: 5 TLSRRTLL-AGA--ASLPLVTILRRPANAAEFEYKLATGQDPTHPVNLRAQEALNRIREA 61 Query: 72 TGGRLDIKLFPANQLGSDTDLMSQIRNGGVEFFNQASVVLSTLVPAAGIVNTGFAFHDYK 131 +GGRLDIKLFPANQLGSDTDL+SQ+RNG VEFFN ++ +L+T +PAA + NTGFAF DY Sbjct: 62 SGGRLDIKLFPANQLGSDTDLLSQVRNGSVEFFNLSTSILATFIPAASLPNTGFAFKDYD 121 Query: 132 EVWQAMDGPLGAYVRAQIEKVGLLTMSKPWDNGFRQITTSTKPIKTAGDLKGLKLRVPAA 191 VW AMDG LG Y+R QI K + T+SK WDNGFR IT+ST+ I+T DLKG K+RVP A Sbjct: 122 AVWAAMDGGLGNYIREQIAKTPIQTVSKAWDNGFRHITSSTREIRTPEDLKGFKIRVPPA 181 Query: 192 PMLTSLFTALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEVQKFCTISNHVW 251 PMLTSLF AL A P+NFNE+YS+LQTK+ EGQENPLAI +T RLYEVQK C+++ HVW Sbjct: 182 PMLTSLFKALEAGAAPLNFNELYSALQTKIFEGQENPLAITATTRLYEVQKSCSLTGHVW 241 Query: 252 DAYWILGNRRAFEKLPKDIQEIVRRELDKAATDERADIASLAGFARNDLQGKGVQIIEAD 311 D YWILGN+RAF++LP+D++ +V RELD++A D+RADI L+ R +L KG+ IE + Sbjct: 242 DGYWILGNKRAFQRLPEDLRALVTRELDRSADDQRADIVRLSASLRQELTAKGITFIEVN 301 Query: 312 KDSFKAALAQANFYKDMRAKFGDDAWKLLQNAVGSLG 348 +D F+ AL + FYKD RAKFGD AW L+ G L Sbjct: 302 RDPFRDALGRTTFYKDWRAKFGDAAWGHLEAVSGKLA 338