BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3064.p (296 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774535.1| LysR family transcription regulator protein ... 532 e-149 ref|YP_001793285.1| LysR family transcriptional regulator [Lepto... 425 e-117 ref|YP_002945191.1| LysR family transcriptional regulator [Vario... 423 e-116 ref|YP_004491128.1| LysR family transcriptional regulator [Delft... 370 e-100 ref|YP_001561764.1| LysR family transcriptional regulator [Delft... 369 e-100 >ref|YP_003774535.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62627.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 295 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 284/294 (96%), Positives = 292/294 (99%) Query: 1 MAVLPPLPNLQAFEAVARRKSFALAAAELHLTASAVSHQVARLESYLGIRLFERSAHGVR 60 MAVLPPLPNLQAFEAVARRKSFALAAAELHLTASAVSHQVARLESYLGIRLFERSAHGVR Sbjct: 1 MAVLPPLPNLQAFEAVARRKSFALAAAELHLTASAVSHQVARLESYLGIRLFERSAHGVR 60 Query: 61 ITTAGESYLARIQGAISAITAASMDVRQGVSNTLYIHSAPSIASLWLMARLNDFARTYPE 120 ITTAGE+YLARIQGAISAITAASMDVRQGVSNTLYIHSAPSIASLWLMARLNDFAR+YPE Sbjct: 61 ITTAGEAYLARIQGAISAITAASMDVRQGVSNTLYIHSAPSIASLWLMARLNDFARSYPE 120 Query: 121 ITFNLSAAHSQSNFELGEVDIDIRYGIPNWPGLVVEPLFEERIVPLASPAFIREYKLKKP 180 ITFNLSAAHSQSNFELGEVDIDIRYGIPNWPGLVVEPLFEERIVPLASPAFIREY+L+KP Sbjct: 121 ITFNLSAAHSQSNFELGEVDIDIRYGIPNWPGLVVEPLFEERIVPLASPAFIREYRLRKP 180 Query: 181 ADLLGVKLIRSNVSVVQWSDWFGEFADVRPPEQFAVRFDRAQMSLDAATQGLGVALESAT 240 ADLLGVKLIRSNVSVVQW+DWFGEFADVR PEQFAVRFDRAQMSLDAATQGLGVALESAT Sbjct: 181 ADLLGVKLIRSNVSVVQWADWFGEFADVRAPEQFAVRFDRAQMSLDAATQGLGVALESAT 240 Query: 241 VAARHIEEKKLKPVFGLERAIKVKAHFAVYPAHHARRPAVAAFLEWLREQAEVQ 294 VAARH+EEKKLKP+FGLERAIKVKAHFAVYPAHHARRPAVAAFLEWLREQA+ Q Sbjct: 241 VAARHLEEKKLKPIFGLERAIKVKAHFAVYPAHHARRPAVAAFLEWLREQADGQ 294 >ref|YP_001793285.1| LysR family transcriptional regulator [Leptothrix cholodnii SP-6] gb|ACB36520.1| transcriptional regulator, LysR family [Leptothrix cholodnii SP-6] Length = 297 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 218/291 (74%), Positives = 256/291 (87%) Query: 1 MAVLPPLPNLQAFEAVARRKSFALAAAELHLTASAVSHQVARLESYLGIRLFERSAHGVR 60 M+ +PP+ NLQAFEAVARR+SFALAAAELHLTASA+SHQV RLE++LG+RLFERSAHGVR Sbjct: 1 MSYIPPITNLQAFEAVARRRSFALAAAELHLTASAISHQVTRLEAHLGVRLFERSAHGVR 60 Query: 61 ITTAGESYLARIQGAISAITAASMDVRQGVSNTLYIHSAPSIASLWLMARLNDFARTYPE 120 I+ AGESYL+RI A+SAI AA+ D+RQGV N+LY+HSAPSIASLWLMARL FA+ YP+ Sbjct: 61 ISPAGESYLSRIGRALSAIAAATEDLRQGVRNSLYVHSAPSIASLWLMARLQGFAQAYPD 120 Query: 121 ITFNLSAAHSQSNFELGEVDIDIRYGIPNWPGLVVEPLFEERIVPLASPAFIREYKLKKP 180 I+ NLS+AH+ S+FELG+ DIDIRYG+PNWP LVVEPLFEE IVPLASP FIRE++LK+P Sbjct: 121 ISLNLSSAHTPSDFELGQSDIDIRYGVPNWPDLVVEPLFEESIVPLASPEFIREHRLKRP 180 Query: 181 ADLLGVKLIRSNVSVVQWSDWFGEFADVRPPEQFAVRFDRAQMSLDAATQGLGVALESAT 240 LLGVKLI+SNVSVVQW+DWF F D PE+F+VRFDRAQMSLDAATQGLGVALES T Sbjct: 181 EHLLGVKLIQSNVSVVQWADWFSAFTDQHAPERFSVRFDRAQMSLDAATQGLGVALESTT 240 Query: 241 VAARHIEEKKLKPVFGLERAIKVKAHFAVYPAHHARRPAVAAFLEWLREQA 291 +A RHI E++L+PVFGL++AIKVKAHFAVYP HA+RPAV AFL WL +A Sbjct: 241 IAGRHIAERRLRPVFGLDKAIKVKAHFAVYPPRHAKRPAVEAFLAWLHGEA 291 >ref|YP_002945191.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gb|ACS19925.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 294 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 214/291 (73%), Positives = 261/291 (89%) Query: 1 MAVLPPLPNLQAFEAVARRKSFALAAAELHLTASAVSHQVARLESYLGIRLFERSAHGVR 60 M+ LP + NLQAFEAVARR+SFALAA+ELHLTASA+SHQV+RLE++LG+RLFERSAHGVR Sbjct: 1 MSTLPAVTNLQAFEAVARRRSFALAASELHLTASAISHQVSRLEAHLGVRLFERSAHGVR 60 Query: 61 ITTAGESYLARIQGAISAITAASMDVRQGVSNTLYIHSAPSIASLWLMARLNDFARTYPE 120 ++ AG+ YL+++ GA+ AI +A+ D+RQGVSN+LY+HSAPSIASLWLM+RL FA+ YP+ Sbjct: 61 LSAAGDMYLSKVGGALLAIASATDDLRQGVSNSLYVHSAPSIASLWLMSRLRGFAQAYPD 120 Query: 121 ITFNLSAAHSQSNFELGEVDIDIRYGIPNWPGLVVEPLFEERIVPLASPAFIREYKLKKP 180 I+ NLSAAH+ S+F LG+ DIDIRYGIPNWP LVVEPLFEERIVPLASPAFIR++ LK+ Sbjct: 121 ISLNLSAAHTTSDFALGQADIDIRYGIPNWPDLVVEPLFEERIVPLASPAFIRQHGLKRI 180 Query: 181 ADLLGVKLIRSNVSVVQWSDWFGEFADVRPPEQFAVRFDRAQMSLDAATQGLGVALESAT 240 L GVKLI+SNVSVVQWSDWFG+F+D R P++FA+RFDRAQMSLDAATQGLGVALESAT Sbjct: 181 EQLGGVKLIQSNVSVVQWSDWFGQFSDKRAPDRFAIRFDRAQMSLDAATQGLGVALESAT 240 Query: 241 VAARHIEEKKLKPVFGLERAIKVKAHFAVYPAHHARRPAVAAFLEWLREQA 291 +AARHI E+KL+PVFGL++AIKVKAHFAVYP HA+R +VAAFL+W+ +A Sbjct: 241 IAARHIAERKLRPVFGLDQAIKVKAHFAVYPPRHAKRSSVAAFLQWIHAEA 291 >ref|YP_004491128.1| LysR family transcriptional regulator [Delftia sp. Cs1-4] gb|AEF92773.1| transcriptional regulator, LysR family [Delftia sp. Cs1-4] Length = 304 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 198/291 (68%), Positives = 238/291 (81%) Query: 1 MAVLPPLPNLQAFEAVARRKSFALAAAELHLTASAVSHQVARLESYLGIRLFERSAHGVR 60 MA +P +LQAFEAVARR+SFALAA+ELHLTASAVSHQVA+LE+ LG+RLFERSAHGVR Sbjct: 1 MASIPSSAHLQAFEAVARRRSFALAASELHLTASAVSHQVAKLEAQLGVRLFERSAHGVR 60 Query: 61 ITTAGESYLARIQGAISAITAASMDVRQGVSNTLYIHSAPSIASLWLMARLNDFARTYPE 120 ++ G++YL R+ GA++AI +A+ D+R +SN+LY+H APSIASLWLM RL DFAR P Sbjct: 61 LSRPGQAYLERVGGALAAIVSATEDLRHSMSNSLYVHCAPSIASLWLMPRLRDFARACPH 120 Query: 121 ITFNLSAAHSQSNFELGEVDIDIRYGIPNWPGLVVEPLFEERIVPLASPAFIREYKLKKP 180 I NLSAAHS S+F LG+ DIDIRYGI WP L VEPLFEE I+PLASPAF+ E+ L++ Sbjct: 121 IALNLSAAHSHSDFALGQADIDIRYGIAQWPELEVEPLFEEHILPLASPAFVAEHGLQRV 180 Query: 181 ADLLGVKLIRSNVSVVQWSDWFGEFADVRPPEQFAVRFDRAQMSLDAATQGLGVALESAT 240 LL V LI+SNVS+VQWSDWF F+ +R PE+FAVRFDRAQMSLDAATQGLGVALESA Sbjct: 181 QQLLHVPLIQSNVSIVQWSDWFHSFSQLRAPERFAVRFDRAQMSLDAATQGLGVALESAM 240 Query: 241 VAARHIEEKKLKPVFGLERAIKVKAHFAVYPAHHARRPAVAAFLEWLREQA 291 A HI + +L FG++RA++VKAHFAVYPA +ARRPAVAAFL WL +A Sbjct: 241 NAGGHIADGRLVAPFGMDRALRVKAHFAVYPARNARRPAVAAFLAWLHAEA 291 >ref|YP_001561764.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1] gb|ABX33379.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1] Length = 323 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 196/291 (67%), Positives = 235/291 (80%) Query: 1 MAVLPPLPNLQAFEAVARRKSFALAAAELHLTASAVSHQVARLESYLGIRLFERSAHGVR 60 MA +P +LQAFEAVARR+SFALAA+ELHLTASAVSHQVA+LE+ LG+RLFERSAHGVR Sbjct: 20 MASIPTTAHLQAFEAVARRRSFALAASELHLTASAVSHQVAKLEAQLGVRLFERSAHGVR 79 Query: 61 ITTAGESYLARIQGAISAITAASMDVRQGVSNTLYIHSAPSIASLWLMARLNDFARTYPE 120 ++ G++YL R+ GA++AI +A+ D+R +SN+LY+H APSIASLWLM RL DFAR P Sbjct: 80 LSRPGQAYLERVGGALAAIVSATEDLRHSMSNSLYVHCAPSIASLWLMPRLRDFARACPH 139 Query: 121 ITFNLSAAHSQSNFELGEVDIDIRYGIPNWPGLVVEPLFEERIVPLASPAFIREYKLKKP 180 I NLSAAHS S+F LG+ DIDIRYGI WP L VEPLFEER++PLASPAF+ E+ L + Sbjct: 140 IALNLSAAHSHSDFALGQADIDIRYGIAQWPDLEVEPLFEERVLPLASPAFVAEHGLARV 199 Query: 181 ADLLGVKLIRSNVSVVQWSDWFGEFADVRPPEQFAVRFDRAQMSLDAATQGLGVALESAT 240 LL V LI+SNVS+VQWSDWF F +R PE+FAVRFDRAQMSLDAATQGLGVALESA Sbjct: 200 QQLLHVPLIQSNVSIVQWSDWFLAFTPLRAPERFAVRFDRAQMSLDAATQGLGVALESAM 259 Query: 241 VAARHIEEKKLKPVFGLERAIKVKAHFAVYPAHHARRPAVAAFLEWLREQA 291 A HI + +L FG+E+A++VKAHFAVYP +A RPAVAAFL WL +A Sbjct: 260 NAGGHIADGRLVAPFGMEQALRVKAHFAVYPTRNAHRPAVAAFLAWLHGEA 310