BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3063.p (312 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774536.1| signal peptide protein [Herbaspirillum serop... 472 e-131 gb|EGC98270.1| hypothetical protein B1M_42468 [Burkholderia sp. ... 295 8e-78 ref|YP_003604832.1| NAD/FAD-utilizing enzyme [Burkholderia sp. C... 293 2e-77 ref|ZP_03571608.1| conserved hypothetical protein [Burkholderia ... 292 4e-77 ref|YP_001585352.1| hypothetical protein Bmul_5390 [Burkholderia... 292 5e-77 >ref|YP_003774536.1| signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ62628.1| signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 311 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 253/305 (82%), Positives = 274/305 (89%), Gaps = 4/305 (1%) Query: 9 KESGLRSMLSRLTSRLLLAATCALAV----GSWAHAQTQTGAVAMKSRYEELQGELSNNG 64 +ES LRS LSRL+ L+ A AL + + A QTQ G AMKSRYEELQGELSNN Sbjct: 4 EESRLRSTLSRLSRPLMACAALALVLCGAAQAQAQNQTQAGMAAMKSRYEELQGELSNNA 63 Query: 65 YHRPLYLNSREEGGNVKGDIYAVLSYPFAQVRESLDNPDHWCDILILHLNTKYCRMMREN 124 Y RPLYLNSRE+ VKGDIYAVL+YPFAQVRE+LD P+HWCDILILHLNTKYCR++RE Sbjct: 64 YQRPLYLNSREQDSTVKGDIYAVLAYPFAQVREALDGPEHWCDILILHLNTKYCRLLREG 123 Query: 125 GKTTLRMQVGKKTEQDLNDTYRVDLRYHGGASAADYFSSSMLADKGPLDTSNYRIEIEAI 184 GKTTLRMQVGKKTEQDLNDTYRVDLRYHGG+SAA+YFSSSMLADKGPLDTSNYRIEIEAI Sbjct: 124 GKTTLRMQVGKKTEQDLNDTYRVDLRYHGGSSAAEYFSSSMLADKGPLDTSNYRIEIEAI 183 Query: 185 PLDDKRSFLHFSYAYSYGMASKLALRAYLMTAGRDKVGFSVVKREANGQPQYVSGSRATV 244 PLD++RSFLHFSYAYSYGMAS+LALRAYLMT GRDKVGFSVVKR+ANGQ QYVSGSRATV Sbjct: 184 PLDERRSFLHFSYAYSYGMASRLALRAYLMTVGRDKVGFSVVKRDANGQAQYVSGSRATV 243 Query: 245 ERNTMRYYLAIDAYLSGLEAPAGERLEKRLTAWYGATEQYPRQLHEVSREDYLSMKRKEV 304 ERNTMRYYLAIDAYL+ LEAPAGERLEKRL AWYGATEQYPRQLHE++RE+YLSMKRKEV Sbjct: 244 ERNTMRYYLAIDAYLAALEAPAGERLEKRLAAWYGATEQYPRQLHELTREEYLSMKRKEV 303 Query: 305 ARQQK 309 ARQQK Sbjct: 304 ARQQK 308 >gb|EGC98270.1| hypothetical protein B1M_42468 [Burkholderia sp. TJI49] Length = 303 Score = 295 bits (754), Expect = 8e-78, Method: Composition-based stats. Identities = 150/301 (49%), Positives = 192/301 (63%), Gaps = 11/301 (3%) Query: 14 RSMLSRLTSRLLLAATCALAVGSWAHAQTQTGAVAMKSRYEELQGELSNNGYHRPLYLNS 73 R+ R L +AA C VG A + GA A+ RY L +L NN +HRPLYL S Sbjct: 9 RTRFVRPVWHLFVAALC---VGWSALSFGADGAAALLDRYRSLGEQLKNNPFHRPLYLES 65 Query: 74 REEGGNVKGDIYAVLSYPFAQVRESLDNPD----HWCDILILHLNTKYCRMMRENGKTTL 129 E +KGDIYAV+ YPF V L++P +WC +LILHLNTKYC + L Sbjct: 66 SEAASTLKGDIYAVVDYPFQVVNGKLNDPAQGPANWCAVLILHLNTKYCHASSGSNGAVL 125 Query: 130 RMQVGKKTEQDLNDTYRVDLRYHGGASAADYFSSSMLADKGPLDTSNYRIEIEAIPLDDK 189 + +G+K EQ L+DTYRV RY A+ DYF + AD GP+ T +YRI +EA+P+ D Sbjct: 126 DVNIGRKIEQKLSDTYRVQFRYRAAAATPDYFQVDLSADSGPMSTKDYRIALEAVPVGDS 185 Query: 190 RSFLHFSYAYSYGMASKLALRAYLMTAGRDKVGFSVVKREANGQPQYVSGSRATVERNTM 249 R+FLH +Y+Y +G +LA++ YL T G DKVGF+ V + QPQY+ G R +ERNTM Sbjct: 186 RTFLHLTYSYGFGTVGRLAMKTYLATIGSDKVGFTTVGGASAAQPQYIGGVRGLLERNTM 245 Query: 250 RYYLAIDAYLSGLEAPAGERLEKRLTAWYGATEQYPRQLHEVSREDYLSMKRKEVARQQK 309 RYYLAIDAYL+ L+ P L++RL W+ ATEQYPRQLHEV R+DYL MK +EV RQQ Sbjct: 246 RYYLAIDAYLATLDKP----LDQRLARWFDATEQYPRQLHEVDRKDYLQMKAQEVQRQQT 301 Query: 310 A 310 A Sbjct: 302 A 302 >ref|YP_003604832.1| NAD/FAD-utilizing enzyme [Burkholderia sp. CCGE1002] gb|ADG15321.1| NAD/FAD-utilizing enzyme [Burkholderia sp. CCGE1002] Length = 310 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 141/275 (51%), Positives = 184/275 (66%), Gaps = 4/275 (1%) Query: 40 AQTQTGAVAMKSRYEELQGELSNNGYHRPLYLNSREEGGNVKGDIYAVLSYPFAQVRESL 99 AQ A ++ +Y+ L +L++N +HRPLYL S+E +KGDIY VL+YPFA V +L Sbjct: 35 AQADDSAARLREKYQSLTQQLAHNPFHRPLYLESQELPSALKGDIYGVLNYPFAVVSGAL 94 Query: 100 DNPD----HWCDILILHLNTKYCRMMRENGKTTLRMQVGKKTEQDLNDTYRVDLRYHGGA 155 +P +WCD+LILHLNTKYC + T L + +GKKTE+ L+ +YRV + A Sbjct: 95 SDPAQGPANWCDVLILHLNTKYCHASISDSGTVLTVNIGKKTEETLSSSYRVQFNFRPVA 154 Query: 156 SAADYFSSSMLADKGPLDTSNYRIEIEAIPLDDKRSFLHFSYAYSYGMASKLALRAYLMT 215 S ADYF + A GPL T +YRI +EAIP+ D R+F+H +YAY YG A ++A++ YL T Sbjct: 155 STADYFRVELSAATGPLSTKDYRIVLEAIPVGDNRTFIHLTYAYGYGTAGRIAMKTYLAT 214 Query: 216 AGRDKVGFSVVKREANGQPQYVSGSRATVERNTMRYYLAIDAYLSGLEAPAGERLEKRLT 275 G KVGFS+ + +PQY+ G R VERNTMRY+LAIDAYL L +P RL+KRL Sbjct: 215 IGSGKVGFSLTPDSSPSEPQYIGGVRGLVERNTMRYFLAIDAYLGALSSPPNARLDKRLA 274 Query: 276 AWYGATEQYPRQLHEVSREDYLSMKRKEVARQQKA 310 W+ ATEQ+PRQLHEVSR DY+ MK E RQQ A Sbjct: 275 DWFDATEQFPRQLHEVSRADYMQMKHDEYQRQQTA 309 >ref|ZP_03571608.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] ref|ZP_03580799.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gb|EEE04729.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gb|EEE13416.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] Length = 303 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 148/295 (50%), Positives = 190/295 (64%), Gaps = 11/295 (3%) Query: 20 LTSRLLLAATCALAVGSWAHAQTQTGAVAMKSRYEELQGELSNNGYHRPLYLNSREEGGN 79 L +R L+A C + S A + GA A+ RY L +L NN +HRPLYL S E Sbjct: 15 LAARALVALCC---IASSALSFGADGAAALLERYRSLGDQLKNNPFHRPLYLESSEAAST 71 Query: 80 VKGDIYAVLSYPFAQVRESLDNPD----HWCDILILHLNTKYCRMMRENGKTTLRMQVGK 135 +KGDIYAV+ YPF V L++P +WC +LILHLNTKYC L + +G+ Sbjct: 72 LKGDIYAVVDYPFQVVNGKLNDPAQGPANWCAVLILHLNTKYCHASSGGNGAVLDVNIGR 131 Query: 136 KTEQDLNDTYRVDLRYHGGASAADYFSSSMLADKGPLDTSNYRIEIEAIPLDDKRSFLHF 195 KTEQ L+DTYR+ RY A+ DYF + AD GP+ T +YRI +EA+PL + R+FLH Sbjct: 132 KTEQKLSDTYRLQFRYRVAAATPDYFQVDLTADSGPMSTKDYRIALEAVPLGESRTFLHL 191 Query: 196 SYAYSYGMASKLALRAYLMTAGRDKVGFSVVKREANGQPQYVSGSRATVERNTMRYYLAI 255 +Y+Y +G +LA++ YL T G DKVGF+ V + G+P YV G R +ERNTMRYYLAI Sbjct: 192 TYSYGFGTVGRLAMKTYLSTIGSDKVGFTTVADASGGKPHYVGGVRGLLERNTMRYYLAI 251 Query: 256 DAYLSGLEAPAGERLEKRLTAWYGATEQYPRQLHEVSREDYLSMKRKEVARQQKA 310 DAYL+ L+ P L++RL W+ ATEQYPRQLHEV R DYL MK +EV RQQ A Sbjct: 252 DAYLATLDKP----LDQRLVRWFDATEQYPRQLHEVDRSDYLQMKAQEVQRQQTA 302 >ref|YP_001585352.1| hypothetical protein Bmul_5390 [Burkholderia multivorans ATCC 17616] ref|YP_001941897.1| NAD/FAD-utilizing enzyme [Burkholderia multivorans ATCC 17616] gb|ABX19060.1| conserved hypothetical protein [Burkholderia multivorans ATCC 17616] dbj|BAG47907.1| NAD/FAD-utilizing enzyme [Burkholderia multivorans ATCC 17616] Length = 303 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 153/313 (48%), Positives = 197/313 (62%), Gaps = 20/313 (6%) Query: 7 IEKESGLRSM-LSRLTSRLLLAATC----ALAVGSWAHAQTQTGAVAMKSRYEELQGELS 61 +E LR M + L +R L+A C AL+ G+ GA A+ RY L +L Sbjct: 1 MELSERLRPMRFAGLAARALVALCCIAWSALSFGA-------DGAAALLERYHSLGDQLK 53 Query: 62 NNGYHRPLYLNSREEGGNVKGDIYAVLSYPFAQVRESLDNPD----HWCDILILHLNTKY 117 NN +HRPLYL S E +KGDIYAV+ YPF V L++P +WC +LILHLNTKY Sbjct: 54 NNPFHRPLYLESSEAASTLKGDIYAVVDYPFQVVNGKLNDPAQGPANWCAVLILHLNTKY 113 Query: 118 CRMMRENGKTTLRMQVGKKTEQDLNDTYRVDLRYHGGASAADYFSSSMLADKGPLDTSNY 177 C L + +G+KTEQ L+DTYR+ RY A+ DYF + AD GP+ T +Y Sbjct: 114 CHASSGGNGAVLDVNIGRKTEQKLSDTYRLQFRYRVAAATPDYFQVDLTADSGPMSTKDY 173 Query: 178 RIEIEAIPLDDKRSFLHFSYAYSYGMASKLALRAYLMTAGRDKVGFSVVKREANGQPQYV 237 RI +EA+PL + R+FLH +Y+Y +G +LA++ YL T G DKVGF+ V + G+P YV Sbjct: 174 RIALEAVPLGESRTFLHLTYSYGFGTVGRLAMKTYLSTIGSDKVGFTTVADASGGKPHYV 233 Query: 238 SGSRATVERNTMRYYLAIDAYLSGLEAPAGERLEKRLTAWYGATEQYPRQLHEVSREDYL 297 G R +ERNTMRYYLAIDAYL+ L+ P L++RL W+ ATEQYPRQLHEV R DYL Sbjct: 234 GGVRGLLERNTMRYYLAIDAYLATLDKP----LDQRLVRWFDATEQYPRQLHEVDRSDYL 289 Query: 298 SMKRKEVARQQKA 310 MK +EV RQQ A Sbjct: 290 QMKAQEVQRQQTA 302