BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3058.p (365 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774540.1| transcription regulator protein [Herbaspiril... 545 e-153 emb|CBJ40312.1| HTH-type (HTHLYSR) transcriptional activator [Ra... 382 e-104 ref|ZP_07674456.1| transcriptional regulator, LysR family [Ralst... 381 e-103 ref|YP_001893049.1| LysR family transcriptional regulator [Ralst... 380 e-103 ref|ZP_00944378.1| NahR [Ralstonia solanacearum UW551] >gi|83726... 380 e-103 >ref|YP_003774540.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62632.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 288/306 (94%), Positives = 294/306 (96%), Gaps = 2/306 (0%) Query: 62 MALIEPRDIDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFGDELFVRTA 121 M LIEPRDIDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSF DELFVRTA Sbjct: 1 MPLIEPRDIDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFEDELFVRTA 60 Query: 122 QGMQPTPFAEQLAEPVAAALQQVARALNLQEGFAPQTSERRFTIAMTDVGEVYFMPRLIE 181 QGMQPTPFAEQLAEPVAAALQQVARALNLQEGFAPQTS RRFTIAMTDVGEVYFMP LIE Sbjct: 61 QGMQPTPFAEQLAEPVAAALQQVARALNLQEGFAPQTSARRFTIAMTDVGEVYFMPALIE 120 Query: 182 ACAEVAPGVSLSTVRAGAIDLKSEMEAGRVDLAIGAFDNLSEALYQRRLFRQEYVSMFRI 241 ACA APGVS+STVRAGAIDLKSEME+GRVDLAIGAFDNLSEALYQRRLFRQEYVSMFRI Sbjct: 121 ACARCAPGVSISTVRAGAIDLKSEMESGRVDLAIGAFDNLSEALYQRRLFRQEYVSMFRI 180 Query: 242 GHALDK--RGEVSLKEFLAAEHLMVSSLESPYDRINQNLEKAGVLPSVRFRVPHFTAVPY 299 GHALDK RGEVSLKEFLAAEHLMVSS ESPYDRINQNLEKAG+LPSVRFRVPHFTAVPY Sbjct: 181 GHALDKPGRGEVSLKEFLAAEHLMVSSQESPYDRINQNLEKAGILPSVRFRVPHFTAVPY 240 Query: 300 IVSTTALVVTVPRKLAESAAAPFGLRYIEPPLRLPALQTNMFWHRRYNQDEGNVWLRNLI 359 IVS+TALVVTVPRKLAESAAAPFGLRYI+PPLRLP+LQTNMFWHRRYNQDEGNVWLR I Sbjct: 241 IVSSTALVVTVPRKLAESAAAPFGLRYIKPPLRLPSLQTNMFWHRRYNQDEGNVWLRGFI 300 Query: 360 SAHFAE 365 S HFAE Sbjct: 301 SEHFAE 306 >emb|CBJ40312.1| HTH-type (HTHLYSR) transcriptional activator [Ralstonia solanacearum CMR15] Length = 321 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 197/307 (64%), Positives = 244/307 (79%), Gaps = 4/307 (1%) Query: 63 ALIEPRDIDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFGDELFVRTAQ 122 ++ RD+DLNLLVVFQE+ +E++I++VA RLGLSQPAVSNALARLR++F DELFVRT + Sbjct: 12 GMLNLRDVDLNLLVVFQEILREKRIAAVAERLGLSQPAVSNALARLRQTFDDELFVRTPR 71 Query: 123 GMQPTPFAEQLAEPVAAALQQVARALNLQEGFAPQTSERRFTIAMTDVGEVYFMPRLIEA 182 GM PT FAEQLAEPVA AL + RA + F TS R FTIAM+DVGEVYFMP L + Sbjct: 72 GMMPTAFAEQLAEPVATALDTLQRAFGQRTHFEATTSTRTFTIAMSDVGEVYFMPVLAQL 131 Query: 183 CAEVAPGVSLSTVRAGAIDLKSEMEAGRVDLAIGAFDNLS-EALYQRRLFRQEYVSMFRI 241 C E APGV + TVRAGA D+K+ M +G +DLAIGAFD+LS E+++QRRLF+Q+YV+MFR Sbjct: 132 CVEQAPGVRIDTVRAGAFDMKAGMASGAIDLAIGAFDDLSGESVFQRRLFQQDYVTMFRR 191 Query: 242 GHALD---KRGEVSLKEFLAAEHLMVSSLESPYDRINQNLEKAGVLPSVRFRVPHFTAVP 298 GH L+ + G ++L+ F AA HL+V+S SPY+ I L+KAG+ S RF VPHF AVP Sbjct: 192 GHPLEPAAQAGRLTLERFRAASHLVVASSASPYNAIGPLLDKAGISQSARFSVPHFVAVP 251 Query: 299 YIVSTTALVVTVPRKLAESAAAPFGLRYIEPPLRLPALQTNMFWHRRYNQDEGNVWLRNL 358 YIVSTT LVVTVPRKLAE AA PFGL+++ PPL+LPALQTN+FWHRR++QD GN WLRNL Sbjct: 252 YIVSTTDLVVTVPRKLAERAAPPFGLQFVPPPLKLPALQTNVFWHRRFHQDAGNQWLRNL 311 Query: 359 ISAHFAE 365 ++ HFAE Sbjct: 312 VARHFAE 318 >ref|ZP_07674456.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] gb|EFP67136.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] Length = 305 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 198/303 (65%), Positives = 242/303 (79%), Gaps = 2/303 (0%) Query: 64 LIEPRDIDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFGDELFVRTAQG 123 ++ RD+DLNLLV+FQE+ +E++IS VA RLGLSQPAVSNAL+RLRR+F DELFVRT +G Sbjct: 1 MLNLRDVDLNLLVLFQEILREKRISVVAERLGLSQPAVSNALSRLRRTFDDELFVRTPRG 60 Query: 124 MQPTPFAEQLAEPVAAALQQVARALNLQEGFAPQTSERRFTIAMTDVGEVYFMPRLIEAC 183 M PT AEQLAEPVA AL + RA + F TS R FTIAM+DVGEVYFMP L + C Sbjct: 61 MMPTALAEQLAEPVATALDTLQRAFGQRTHFEAGTSTRTFTIAMSDVGEVYFMPVLAQLC 120 Query: 184 AEVAPGVSLSTVRAGAIDLKSEMEAGRVDLAIGAFDNLS-EALYQRRLFRQEYVSMFRIG 242 AE APGV + T+RAG D+K+EMEAG +DLAIGAFD+LS E+++QRRLF+Q+YV+MFR G Sbjct: 121 AEQAPGVRIDTLRAGGFDMKAEMEAGAIDLAIGAFDDLSGESIFQRRLFQQDYVTMFRRG 180 Query: 243 HALDKRGEVSLKEFLAAEHLMVSSLESPYDRINQNLEKAGVLPSVRFRVPHFTAVPYIVS 302 HAL + G ++L+ F AA HL+V+S SPY+ I L+KAG+ S RF VPHF AVPYIVS Sbjct: 181 HALSE-GRLTLERFRAASHLVVASSASPYNAIGPLLDKAGITQSARFSVPHFVAVPYIVS 239 Query: 303 TTALVVTVPRKLAESAAAPFGLRYIEPPLRLPALQTNMFWHRRYNQDEGNVWLRNLISAH 362 TT LVVTVPRKLAE AA PFGL ++ PPL+LPALQTN+FWHRR++QD GN WLRNL++ Sbjct: 240 TTDLVVTVPRKLAERAAPPFGLEFVAPPLKLPALQTNVFWHRRFHQDAGNQWLRNLVAQR 299 Query: 363 FAE 365 FAE Sbjct: 300 FAE 302 >ref|YP_001893049.1| LysR family transcriptional regulator [Ralstonia pickettii 12J] ref|YP_002984575.1| LysR family transcriptional regulator [Ralstonia pickettii 12D] gb|ACD29622.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J] gb|ACS65903.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D] Length = 305 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 199/303 (65%), Positives = 242/303 (79%), Gaps = 2/303 (0%) Query: 64 LIEPRDIDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFGDELFVRTAQG 123 ++ RD+DLNLLV+FQE+ +E++IS VA RLGLSQPAVSNAL+RLR++F DELFVRT +G Sbjct: 1 MLNLRDVDLNLLVLFQEILREKRISIVAERLGLSQPAVSNALSRLRQTFDDELFVRTPRG 60 Query: 124 MQPTPFAEQLAEPVAAALQQVARALNLQEGFAPQTSERRFTIAMTDVGEVYFMPRLIEAC 183 M PT AEQLAEPVA AL + RA + F TS R FTIAM+DVGEVYFMP L + C Sbjct: 61 MMPTALAEQLAEPVATALDTLQRAFGQRTHFDAATSTRTFTIAMSDVGEVYFMPLLAQFC 120 Query: 184 AEVAPGVSLSTVRAGAIDLKSEMEAGRVDLAIGAFDNLS-EALYQRRLFRQEYVSMFRIG 242 AE APGV L T RAG D+K+EMEAG +DLAIGAFD+LS E+L+QRRLFRQ+YV+MFR G Sbjct: 121 AEQAPGVRLDTQRAGGFDMKAEMEAGAIDLAIGAFDDLSGESLFQRRLFRQDYVTMFRRG 180 Query: 243 HALDKRGEVSLKEFLAAEHLMVSSLESPYDRINQNLEKAGVLPSVRFRVPHFTAVPYIVS 302 HAL + G+++L+ F AA HL+V+S SPY+ I L+KAG+ S RF VPHF AVPYIVS Sbjct: 181 HALSE-GKLTLERFRAASHLVVASSASPYNAIGPLLDKAGITQSARFSVPHFVAVPYIVS 239 Query: 303 TTALVVTVPRKLAESAAAPFGLRYIEPPLRLPALQTNMFWHRRYNQDEGNVWLRNLISAH 362 TT LVVTVPRKLAE AA PFGL ++ PPL+LPALQTN+FWHRR++QD GN WLRN+++ Sbjct: 240 TTDLVVTVPRKLAERAAPPFGLEFVAPPLKLPALQTNVFWHRRFHQDAGNQWLRNVVAQR 299 Query: 363 FAE 365 FAE Sbjct: 300 FAE 302 >ref|ZP_00944378.1| NahR [Ralstonia solanacearum UW551] gb|EAP73174.1| NahR [Ralstonia solanacearum UW551] Length = 321 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 197/302 (65%), Positives = 242/302 (80%), Gaps = 4/302 (1%) Query: 68 RDIDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFGDELFVRTAQGMQPT 127 RDIDLNLLVVFQE+ +E++I++VA RLGLSQPAVSNALARLR++F D+LFVRT +GM PT Sbjct: 17 RDIDLNLLVVFQEILREKRIAAVAERLGLSQPAVSNALARLRQTFDDDLFVRTPRGMMPT 76 Query: 128 PFAEQLAEPVAAALQQVARALNLQEGFAPQTSERRFTIAMTDVGEVYFMPRLIEACAEVA 187 AEQLAEPV+AAL + RAL + F +S R FT+AM+DVGEVYFMP L + CAE A Sbjct: 77 ALAEQLAEPVSAALDTLQRALGQRTHFDAASSARAFTVAMSDVGEVYFMPVLAQLCAEQA 136 Query: 188 PGVSLSTVRAGAIDLKSEMEAGRVDLAIGAFDNLS-EALYQRRLFRQEYVSMFRIGHALD 246 PGV + TVRAG +D+K M +G +DLAIGAFD+LS E+++QRRLFRQ+YV+MFR GH L+ Sbjct: 137 PGVRIDTVRAGTLDMKGGMASGAIDLAIGAFDDLSGESVFQRRLFRQDYVTMFRRGHPLE 196 Query: 247 ---KRGEVSLKEFLAAEHLMVSSLESPYDRINQNLEKAGVLPSVRFRVPHFTAVPYIVST 303 + G ++L+ F AA HL+V+S SPY+ I LEKAG+ S RF VPHF AVPYIVST Sbjct: 197 QAAQAGGLTLERFRAASHLVVASSASPYNAIGPLLEKAGITQSARFSVPHFVAVPYIVST 256 Query: 304 TALVVTVPRKLAESAAAPFGLRYIEPPLRLPALQTNMFWHRRYNQDEGNVWLRNLISAHF 363 T LVVTVPRKLAE AA PFGLR++ PPL+LPALQTN+FWHRR++QD GN WLRNL++ F Sbjct: 257 TDLVVTVPRKLAERAAPPFGLRFVPPPLKLPALQTNVFWHRRFHQDAGNQWLRNLVATRF 316 Query: 364 AE 365 AE Sbjct: 317 AE 318