BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3056.p (445 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774542.1| homogentisate 1,2-dioxygenase [Herbaspirillu... 847 0.0 ref|YP_001858654.1| homogentisate 1,2-dioxygenase [Burkholderia ... 694 0.0 ref|ZP_02882475.1| homogentisate 1,2-dioxygenase [Burkholderia g... 692 0.0 emb|CCA87859.1| Homogentisate 1,2-dioxygenase [Ralstonia syzygii... 690 0.0 ref|ZP_03266478.1| homogentisate 1,2-dioxygenase [Burkholderia s... 688 0.0 >ref|YP_003774542.1| homogentisate 1,2-dioxygenase [Herbaspirillum seropedicae SmR1] gb|ADJ62634.1| homogentisate 1,2-dioxygenase protein [Herbaspirillum seropedicae SmR1] Length = 445 Score = 847 bits (2188), Expect = 0.0, Method: Composition-based stats. Identities = 417/443 (94%), Positives = 428/443 (96%) Query: 1 MNTVTDSSVSHHVHTRGYQSGFGNEFATEALPGALPAHQNSPQRAPYGLYAEQISGTAFT 60 MNT TD SVSHHVHTRGYQSGFGNEFATEALP ALPAHQNSPQR YGLYAEQISGTAFT Sbjct: 1 MNTATDFSVSHHVHTRGYQSGFGNEFATEALPSALPAHQNSPQRVAYGLYAEQISGTAFT 60 Query: 61 APRGHNRRSWLYRIRPAAVHHPFEPMERGLLVSHFDDVAAPPNQLRWDPLPMPTVPTDFI 120 APRGHNRRSWLYRIRPAA+HHPFE M +GLLVS FDDVA PPNQLRWDPLPMPT PTDFI Sbjct: 61 APRGHNRRSWLYRIRPAAMHHPFEAMSQGLLVSRFDDVAPPPNQLRWDPLPMPTTPTDFI 120 Query: 121 EGMVTIAGNGSPQAQSGCAIHLYAANCSMTDRFFYSADGELLIVPQLGRLQLRTELGVID 180 +G+VT+AGNGSPQAQSGCAIHLYAANCSMTDRFFYSADGELLIVPQ+GRLQLRTE+GVID Sbjct: 121 DGLVTMAGNGSPQAQSGCAIHLYAANCSMTDRFFYSADGELLIVPQMGRLQLRTEMGVID 180 Query: 181 IEPQEIAVIPRGLRFQVRLPDGEARGYICENFGALLRLPDLGPLGSNGLANPRDFATPHA 240 IEPQEIAVIPRG+RFQVRLP GEARGYICENFGALLRLPDLGPLGSNGLANPRDFATPHA Sbjct: 181 IEPQEIAVIPRGVRFQVRLPGGEARGYICENFGALLRLPDLGPLGSNGLANPRDFATPHA 240 Query: 241 WYEDREGDFQLIAKFGGNLWQAKIGHSPLDVVAWHGNYVPYKYDLRHFNTIGSISYDHPD 300 WYEDREGDFQLIAKFGG LWQA+IGHSPLDVVAWHGNY PYKYDLRHFNTIGSISYDHPD Sbjct: 241 WYEDREGDFQLIAKFGGQLWQARIGHSPLDVVAWHGNYAPYKYDLRHFNTIGSISYDHPD 300 Query: 301 PSIFLVLQSQSDTPGVDTIDFVIFPPRWLAAENTFRPPWFHRNVASEYMGLITGQYDAKE 360 PSIFLVLQSQSDTPGVDTIDFVIFPPRWLAAENTFRPPWFHRNVASEYMGLITGQYDAKE Sbjct: 301 PSIFLVLQSQSDTPGVDTIDFVIFPPRWLAAENTFRPPWFHRNVASEYMGLITGQYDAKE 360 Query: 361 GGGFVPGGGSLHNCMSGHGPDAATFEKASRIDTSIPNKVDHTMAFMFETRNILCPTRHAL 420 GGGFVPGGGSLHNCMSGHGPDAATFEKASRIDTS PNKVDHTMAFMFETRNILCPTRHAL Sbjct: 361 GGGFVPGGGSLHNCMSGHGPDAATFEKASRIDTSTPNKVDHTMAFMFETRNILCPTRHAL 420 Query: 421 SAPTLQRDYQDCWLGIQKNFNPE 443 ++P LQRDYQDCWLGIQKNFNPE Sbjct: 421 ASPALQRDYQDCWLGIQKNFNPE 443 >ref|YP_001858654.1| homogentisate 1,2-dioxygenase [Burkholderia phymatum STM815] gb|ACC71608.1| homogentisate 1,2-dioxygenase [Burkholderia phymatum STM815] Length = 440 Score = 694 bits (1791), Expect = 0.0, Method: Composition-based stats. Identities = 339/429 (79%), Positives = 373/429 (86%), Gaps = 2/429 (0%) Query: 17 GYQSGFGNEFATEALPGALPAHQNSPQRAPYGLYAEQISGTAFTAPRGHNRRSWLYRIRP 76 GYQSGF NEFATEALPGALP +NSPQRAPYGLYAEQ+SGTAFTAPRGHNRRSWLYRIRP Sbjct: 12 GYQSGFANEFATEALPGALPQGRNSPQRAPYGLYAEQLSGTAFTAPRGHNRRSWLYRIRP 71 Query: 77 AAVHHPFEPMERGLLVSHFDDVA-APPNQLRWDPLPMPTVPTDFIEGMVTIAGNGSPQAQ 135 AAVH PF + LV++F +V PPNQLRWDPLPMPT PTDF++G VT+AGNGS +A Sbjct: 72 AAVHQPFTALPSHRLVANFAEVPPTPPNQLRWDPLPMPTEPTDFVDGWVTMAGNGSAEAM 131 Query: 136 SGCAIHLYAANCSMTDRFFYSADGELLIVPQLGRLQLRTELGVIDIEPQEIAVIPRGLRF 195 SGCAIH+YAAN SM DRFFY+ADGELLIVPQ GRL + TE+G +D+EP EIAVIPRG+RF Sbjct: 132 SGCAIHVYAANQSMQDRFFYNADGELLIVPQAGRLSIFTEMGKLDVEPFEIAVIPRGVRF 191 Query: 196 QVRLPDGEARGYICENFGALLRLPDLGPLGSNGLANPRDFATPHAWYEDREGDFQLIAKF 255 V L DG A GYICENFGALLRLPDLGP+GSNGLANPRDF TPHA YEDREGDF+L+AK Sbjct: 192 SVSLLDGRASGYICENFGALLRLPDLGPIGSNGLANPRDFLTPHAAYEDREGDFELVAKM 251 Query: 256 GGNLWQAKIGHSPLDVVAWHGNYVPYKYDLRHFNTIGSISYDHPDPSIFLVLQSQSDTPG 315 G+LW+A IGHSPLDVVAWHGNY PYKYDLRHFNTIGSISYDHPDPSIFLVLQSQSDTPG Sbjct: 252 NGHLWRADIGHSPLDVVAWHGNYAPYKYDLRHFNTIGSISYDHPDPSIFLVLQSQSDTPG 311 Query: 316 VDTIDFVIFPPRWLAAENTFRPPWFHRNVASEYMGLITGQYDAKEGGGFVPGGGSLHNCM 375 VD+IDFVIFPPRWLAAE+TFRPPWFHRNVASE+MGL+ G YDAK GFVPGG SLHNCM Sbjct: 312 VDSIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGAYDAK-AEGFVPGGASLHNCM 370 Query: 376 SGHGPDAATFEKASRIDTSIPNKVDHTMAFMFETRNILCPTRHALSAPTLQRDYQDCWLG 435 SGHGPDA TFEKAS IDTS PNKVD+TMAFMFETR ++ PTR AL LQ Y +CW G Sbjct: 371 SGHGPDADTFEKASNIDTSKPNKVDNTMAFMFETRTLIKPTRFALETAQLQAHYFECWQG 430 Query: 436 IQKNFNPER 444 ++K+FNPE+ Sbjct: 431 LEKHFNPEQ 439 >ref|ZP_02882475.1| homogentisate 1,2-dioxygenase [Burkholderia graminis C4D1M] gb|EDT11678.1| homogentisate 1,2-dioxygenase [Burkholderia graminis C4D1M] Length = 448 Score = 692 bits (1787), Expect = 0.0, Method: Composition-based stats. Identities = 340/429 (79%), Positives = 371/429 (86%), Gaps = 2/429 (0%) Query: 17 GYQSGFGNEFATEALPGALPAHQNSPQRAPYGLYAEQISGTAFTAPRGHNRRSWLYRIRP 76 GYQSGF NEFATEALPGALPA +NSPQR YGLYAEQ+SGTAFTAPRGHNRRSWLYRIRP Sbjct: 20 GYQSGFANEFATEALPGALPAGRNSPQRVAYGLYAEQLSGTAFTAPRGHNRRSWLYRIRP 79 Query: 77 AAVHHPFEPMERGLLVSHFDDVA-APPNQLRWDPLPMPTVPTDFIEGMVTIAGNGSPQAQ 135 AAVH PF P+ LV++F DV PPNQLRWD LPMPTVPTDFI+G VT+AGNG+ ++ Sbjct: 80 AAVHKPFAPLPSERLVANFADVPPTPPNQLRWDALPMPTVPTDFIDGWVTMAGNGAAESM 139 Query: 136 SGCAIHLYAANCSMTDRFFYSADGELLIVPQLGRLQLRTELGVIDIEPQEIAVIPRGLRF 195 +GCAIHLYAAN SM DRFFYSADGELLIVPQ GRL + TELG +D+EP EIAVIPRG+RF Sbjct: 140 NGCAIHLYAANRSMQDRFFYSADGELLIVPQEGRLHIATELGRLDVEPFEIAVIPRGVRF 199 Query: 196 QVRLPDGEARGYICENFGALLRLPDLGPLGSNGLANPRDFATPHAWYEDREGDFQLIAKF 255 V LPDG ARGYICENFGALLRLPDLGP+GSNGLANPRDF TPHA YEDREGDF+L+AK Sbjct: 200 AVSLPDGNARGYICENFGALLRLPDLGPIGSNGLANPRDFLTPHAAYEDREGDFELVAKM 259 Query: 256 GGNLWQAKIGHSPLDVVAWHGNYVPYKYDLRHFNTIGSISYDHPDPSIFLVLQSQSDTPG 315 GNLW+A IGHSPLDVVAWHGNY PYKYDLR FNTIGSIS+DHPDPSIFLVLQSQSDTPG Sbjct: 260 NGNLWRADIGHSPLDVVAWHGNYAPYKYDLRRFNTIGSISFDHPDPSIFLVLQSQSDTPG 319 Query: 316 VDTIDFVIFPPRWLAAENTFRPPWFHRNVASEYMGLITGQYDAKEGGGFVPGGGSLHNCM 375 VDTIDFVIFPPRWLAAE+TFRPPWFHRNVASE+MGL+ G YDAK GFVPGG SLHNCM Sbjct: 320 VDTIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGVYDAK-AEGFVPGGASLHNCM 378 Query: 376 SGHGPDAATFEKASRIDTSIPNKVDHTMAFMFETRNILCPTRHALSAPTLQRDYQDCWLG 435 SGHGPDA TFEKAS DTS P+KV TMAFMFETR ++ PTR AL LQ Y +CW G Sbjct: 379 SGHGPDAETFEKASHSDTSKPSKVGDTMAFMFETRTLIKPTRFALETAQLQAHYYECWQG 438 Query: 436 IQKNFNPER 444 ++K+FNPE+ Sbjct: 439 LKKHFNPEQ 447 >emb|CCA87859.1| Homogentisate 1,2-dioxygenase [Ralstonia syzygii R24] Length = 448 Score = 690 bits (1780), Expect = 0.0, Method: Composition-based stats. Identities = 331/428 (77%), Positives = 372/428 (86%), Gaps = 1/428 (0%) Query: 17 GYQSGFGNEFATEALPGALPAHQNSPQRAPYGLYAEQISGTAFTAPRGHNRRSWLYRIRP 76 YQSGFGNEFATEALPGALP QNSPQ+APYGLYAEQ+SGTAFTAPR HNRR+WLYRIRP Sbjct: 21 AYQSGFGNEFATEALPGALPHGQNSPQKAPYGLYAEQLSGTAFTAPRAHNRRAWLYRIRP 80 Query: 77 AAVHHPFEPMERGLLVSHFDDVAAPPNQLRWDPLPMPTVPTDFIEGMVTIAGNGSPQAQS 136 AAVH PFEP+ + S+F++V PNQLRWDPLP P+ TDF++G+VT AGNG P AQ+ Sbjct: 81 AAVHLPFEPIAQDRFHSNFNEVPPSPNQLRWDPLPTPSAGTDFVDGIVTFAGNGGPDAQT 140 Query: 137 GCAIHLYAANCSMTDRFFYSADGELLIVPQLGRLQLRTELGVIDIEPQEIAVIPRGLRFQ 196 GC IHLYAAN SMTDRFFY+ADGELLIVPQ GRL+L TELGVID+EP EIAVIPRG+RF+ Sbjct: 141 GCGIHLYAANASMTDRFFYNADGELLIVPQQGRLRLLTELGVIDVEPLEIAVIPRGVRFR 200 Query: 197 VRLPDGEARGYICENFGALLRLPDLGPLGSNGLANPRDFATPHAWYEDREGDFQLIAKFG 256 V LPDGEARGY+CENFGA+ RLPDLGP+GSNGLANPRDF TPHAWYEDREGDF+L+AKF Sbjct: 201 VELPDGEARGYLCENFGAIFRLPDLGPIGSNGLANPRDFLTPHAWYEDREGDFELVAKFQ 260 Query: 257 GNLWQAKIGHSPLDVVAWHGNYVPYKYDLRHFNTIGSISYDHPDPSIFLVLQSQSDTPGV 316 GNLW+A+IGHSPLDVVAWHGNY PYKYDLR FN +GSISYDHPDPSIFLVLQS SDTPGV Sbjct: 261 GNLWRARIGHSPLDVVAWHGNYAPYKYDLRLFNAVGSISYDHPDPSIFLVLQSVSDTPGV 320 Query: 317 DTIDFVIFPPRWLAAENTFRPPWFHRNVASEYMGLITGQYDAKEGGGFVPGGGSLHNCMS 376 DTIDFVIFPPRWLA E++FRPPWFHRN+ASE+MGLI G YDAK GFVPGG SLHNCMS Sbjct: 321 DTIDFVIFPPRWLAMEHSFRPPWFHRNIASEFMGLIQGVYDAK-AEGFVPGGASLHNCMS 379 Query: 377 GHGPDAATFEKASRIDTSIPNKVDHTMAFMFETRNILCPTRHALSAPTLQRDYQDCWLGI 436 GHGPDA TFEKAS DT+ P+KVD TMAFMFETR ++ PTR A + LQ Y +CW G+ Sbjct: 380 GHGPDAETFEKASNADTTRPHKVDATMAFMFETRAVIRPTRLAAESAQLQARYFECWQGL 439 Query: 437 QKNFNPER 444 +K+F+P + Sbjct: 440 KKHFDPAQ 447 >ref|ZP_03266478.1| homogentisate 1,2-dioxygenase [Burkholderia sp. H160] gb|EEA01954.1| homogentisate 1,2-dioxygenase [Burkholderia sp. H160] Length = 448 Score = 688 bits (1776), Expect = 0.0, Method: Composition-based stats. Identities = 336/429 (78%), Positives = 370/429 (86%), Gaps = 2/429 (0%) Query: 17 GYQSGFGNEFATEALPGALPAHQNSPQRAPYGLYAEQISGTAFTAPRGHNRRSWLYRIRP 76 GYQSGF NEFATEALPGALP +NSPQRA YGLYAEQ+SGTAFTAPRG+NRRSWLYRIRP Sbjct: 20 GYQSGFANEFATEALPGALPTGRNSPQRAAYGLYAEQLSGTAFTAPRGYNRRSWLYRIRP 79 Query: 77 AAVHHPFEPMERGLLVSHFDDVA-APPNQLRWDPLPMPTVPTDFIEGMVTIAGNGSPQAQ 135 AA+H PF + LV++F +V PPNQLRWDPLPMPT PTDFI+G VT+AGNGS +A Sbjct: 80 AAMHKPFTLIPSERLVANFAEVPPTPPNQLRWDPLPMPTAPTDFIDGWVTMAGNGSAEAM 139 Query: 136 SGCAIHLYAANCSMTDRFFYSADGELLIVPQLGRLQLRTELGVIDIEPQEIAVIPRGLRF 195 SGCAIHLYAAN SM DRFFYSADGELLIVPQ GRLQ+ TE+G +DIEP EIAVIPRG+RF Sbjct: 140 SGCAIHLYAANRSMQDRFFYSADGELLIVPQQGRLQIATEMGRVDIEPFEIAVIPRGVRF 199 Query: 196 QVRLPDGEARGYICENFGALLRLPDLGPLGSNGLANPRDFATPHAWYEDREGDFQLIAKF 255 V LPDG ARGYICENFGALLRLPDLGP+GSNGLANPRDF PHA YEDREG F+L+AK Sbjct: 200 AVSLPDGSARGYICENFGALLRLPDLGPIGSNGLANPRDFLCPHAAYEDREGAFELVAKM 259 Query: 256 GGNLWQAKIGHSPLDVVAWHGNYVPYKYDLRHFNTIGSISYDHPDPSIFLVLQSQSDTPG 315 GNLW+A I HSP DVVAWHGNY PYKYDLR FNTIGS+S+DHPDPSIFLVLQSQSDTPG Sbjct: 260 NGNLWRADIAHSPFDVVAWHGNYAPYKYDLRRFNTIGSVSFDHPDPSIFLVLQSQSDTPG 319 Query: 316 VDTIDFVIFPPRWLAAENTFRPPWFHRNVASEYMGLITGQYDAKEGGGFVPGGGSLHNCM 375 VDTIDFVIFPPRWLAAE+TFRPPWFHRNVASE+MGL+ G YDAK GFVPGG SLHNCM Sbjct: 320 VDTIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGVYDAK-AEGFVPGGASLHNCM 378 Query: 376 SGHGPDAATFEKASRIDTSIPNKVDHTMAFMFETRNILCPTRHALSAPTLQRDYQDCWLG 435 +GHGPDA TFEKAS+IDTS+P KVD TMAFMFETR ++ PTR AL LQ Y +CW G Sbjct: 379 TGHGPDADTFEKASQIDTSVPKKVDDTMAFMFETRTLIKPTRFALETAQLQAHYYECWQG 438 Query: 436 IQKNFNPER 444 ++K+FNPE+ Sbjct: 439 LKKHFNPEQ 447