BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3046.p (493 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774550.1| NADP-dependent succinate-semialdehyde dehydr... 825 0.0 ref|YP_004750974.1| succinate-semialdehyde dehydrogenase [NADP+]... 785 0.0 ref|YP_002947497.1| succinic semialdehyde dehydrogenase [Variovo... 765 0.0 ref|YP_004152947.1| succinic semialdehyde dehydrogenase [Variovo... 762 0.0 ref|YP_004685563.1| NADP+ dependend succinate-semialdehyde dehyd... 738 0.0 >ref|YP_003774550.1| NADP-dependent succinate-semialdehyde dehydrogenase [Herbaspirillum seropedicae SmR1] gb|ADJ62642.1| NADP-dependent succinate-semialdehyde dehydrogenase protein [Herbaspirillum seropedicae SmR1] Length = 493 Score = 825 bits (2131), Expect = 0.0, Method: Composition-based stats. Identities = 464/493 (94%), Positives = 476/493 (96%) Query: 1 MNSLELQRQDLMPGAQLIGAQWRAAADGRVLEVSNPATGQVFATVPDGNAEDARAAVDAA 60 M SL LQRQDLMPGAQLIGA WR AADGR L+VS+PATGQVFA+VPDG A DARAAV+AA Sbjct: 1 MTSLTLQRQDLMPGAQLIGADWRGAADGRQLDVSDPATGQVFASVPDGGAADARAAVEAA 60 Query: 61 VAAFPAWRATPAKQRATIIKRWNDLLLAHQEDLGRLISREQGKPLAEAKGEVAYAASYVE 120 VAAF AWRATPAKQRA IIKRWNDLLLAHQ+DLGRLISREQGKPLAEAKGEVAYAASYVE Sbjct: 61 VAAFAAWRATPAKQRAGIIKRWNDLLLAHQDDLGRLISREQGKPLAEAKGEVAYAASYVE 120 Query: 121 WFGEEATRANGDIIPAPVTGRRMMALKEPVGVVAAITPWNFPAAMIARKIAPALAAGCTV 180 WFGEEATRANGDIIPAPVTGRRMMALKEPVGVVAAITPWNFPAAMIARKIAPALAAGCTV Sbjct: 121 WFGEEATRANGDIIPAPVTGRRMMALKEPVGVVAAITPWNFPAAMIARKIAPALAAGCTV 180 Query: 181 VCKPAEDTPLTSLALIRLALEAGVPAGVINIVTASRERTPEVVDVWLADGRVRKISFTGS 240 VCKPAEDTPLTSLAL+RLA EAGVP GVINIVTASRERTPEVVDVWLADGRVRKISFTGS Sbjct: 181 VCKPAEDTPLTSLALVRLAQEAGVPVGVINIVTASRERTPEVVDVWLADGRVRKISFTGS 240 Query: 241 TAVGKHLARHSADTLKKLSLELGGNAPFIVFDDADLDAAIDGVMAAKFRNGGQTCVSPNR 300 TAVGKHLARHSADTLKKLSLELGGNAPFIVFDDAD+DAAIDGVMAAKFRNGGQTCVSPNR Sbjct: 241 TAVGKHLARHSADTLKKLSLELGGNAPFIVFDDADVDAAIDGVMAAKFRNGGQTCVSPNR 300 Query: 301 IYVQDKVYETFVAKLGARVAALKVGPATDPASQIGPMINARAIGKIDQHVRDAIERGARV 360 IYVQ+KVY+ FV KLGARVAALKVGPATDPASQIGPMINARAI KIDQHVRDAI RGARV Sbjct: 301 IYVQEKVYDAFVDKLGARVAALKVGPATDPASQIGPMINARAIAKIDQHVRDAIARGARV 360 Query: 361 ITGGKRLQGPGFESDNYYAPTVLANVTGEMQCSCEETFGPVAPITRFSTEEEVIAAANAT 420 ITGGKRLQGPGF SDNYYAPTVLA+VTG MQCSCEETFGPVAPITRF+TE+EVIAAANAT Sbjct: 361 ITGGKRLQGPGFGSDNYYAPTVLADVTGAMQCSCEETFGPVAPITRFATEDEVIAAANAT 420 Query: 421 PFGLAAYFYSTDVRRIHRVTDALESGIVGVNEGALAAEAAPFGGVKESGYGREGSVHGLD 480 PFGLAAYFYSTDVRRIHRVTDALESGIVGVNEGALAAEAAPFGGVKESGYGREGSVHGLD Sbjct: 421 PFGLAAYFYSTDVRRIHRVTDALESGIVGVNEGALAAEAAPFGGVKESGYGREGSVHGLD 480 Query: 481 DYLHTKYVCQGQL 493 DYLHTKYVCQGQL Sbjct: 481 DYLHTKYVCQGQL 493 >ref|YP_004750974.1| succinate-semialdehyde dehydrogenase [NADP+] [Collimonas fungivorans Ter331] gb|AEK60151.1| Succinate-semialdehyde dehydrogenase [NADP+] [Collimonas fungivorans Ter331] Length = 499 Score = 785 bits (2026), Expect = 0.0, Method: Composition-based stats. Identities = 437/493 (88%), Positives = 463/493 (93%) Query: 1 MNSLELQRQDLMPGAQLIGAQWRAAADGRVLEVSNPATGQVFATVPDGNAEDARAAVDAA 60 M LELQ LMPGAQLIGA W A+D R LEVS+PATGQVFATVPDGNA DARAAVDAA Sbjct: 7 MTILELQHPHLMPGAQLIGAAWTEASDLRRLEVSDPATGQVFATVPDGNAADARAAVDAA 66 Query: 61 VAAFPAWRATPAKQRATIIKRWNDLLLAHQEDLGRLISREQGKPLAEAKGEVAYAASYVE 120 AAFPAWRATPAKQRA I+KRWNDLL+AHQ+DLGRLISREQGKPLAE KGEVAYAASYVE Sbjct: 67 AAAFPAWRATPAKQRAAILKRWNDLLIAHQDDLGRLISREQGKPLAEGKGEVAYAASYVE 126 Query: 121 WFGEEATRANGDIIPAPVTGRRMMALKEPVGVVAAITPWNFPAAMIARKIAPALAAGCTV 180 WF EEATRANGDIIPAPVTGRRMMALKEPVGVVAAITPWNFPAAMIARKIAPALAAGCTV Sbjct: 127 WFAEEATRANGDIIPAPVTGRRMMALKEPVGVVAAITPWNFPAAMIARKIAPALAAGCTV 186 Query: 181 VCKPAEDTPLTSLALIRLALEAGVPAGVINIVTASRERTPEVVDVWLADGRVRKISFTGS 240 VCKPAEDTPLTSLAL+ LA +AGVPAGVINIVTASRERTPEVVDVWLAD RVRKISFTGS Sbjct: 187 VCKPAEDTPLTSLALVLLAQQAGVPAGVINIVTASRERTPEVVDVWLADSRVRKISFTGS 246 Query: 241 TAVGKHLARHSADTLKKLSLELGGNAPFIVFDDADLDAAIDGVMAAKFRNGGQTCVSPNR 300 TAVGKHLAR SADTLKKLSLELGGNAPFIVFDDADLDAAI+GVMAAKFRNGGQTCVSPNR Sbjct: 247 TAVGKHLARRSADTLKKLSLELGGNAPFIVFDDADLDAAIEGVMAAKFRNGGQTCVSPNR 306 Query: 301 IYVQDKVYETFVAKLGARVAALKVGPATDPASQIGPMINARAIGKIDQHVRDAIERGARV 360 +YVQD V++ FVAKLGARVAALKVGPATDP+SQIGPMINARAI KID+HVRDA+ERGA++ Sbjct: 307 VYVQDGVHDAFVAKLGARVAALKVGPATDPSSQIGPMINARAIAKIDRHVRDAVERGAKI 366 Query: 361 ITGGKRLQGPGFESDNYYAPTVLANVTGEMQCSCEETFGPVAPITRFSTEEEVIAAANAT 420 ITGG+RLQG G+ SDNYYAPTVL+NV +M CS EETFGP+A +TRF+TEEE IAAANAT Sbjct: 367 ITGGQRLQGEGYASDNYYAPTVLSNVGPDMLCSGEETFGPIAAVTRFATEEEAIAAANAT 426 Query: 421 PFGLAAYFYSTDVRRIHRVTDALESGIVGVNEGALAAEAAPFGGVKESGYGREGSVHGLD 480 PFGLAAYFYSTD+RR+HRVTDALESGIVG+NEGALAAEAAPFGGVKESGYGREGSVHGLD Sbjct: 427 PFGLAAYFYSTDMRRVHRVTDALESGIVGINEGALAAEAAPFGGVKESGYGREGSVHGLD 486 Query: 481 DYLHTKYVCQGQL 493 DYLHTKYVCQGQL Sbjct: 487 DYLHTKYVCQGQL 499 >ref|YP_002947497.1| succinic semialdehyde dehydrogenase [Variovorax paradoxus S110] gb|ACS22231.1| succinic semialdehyde dehydrogenase [Variovorax paradoxus S110] Length = 492 Score = 765 bits (1976), Expect = 0.0, Method: Composition-based stats. Identities = 402/491 (81%), Positives = 445/491 (90%) Query: 3 SLELQRQDLMPGAQLIGAQWRAAADGRVLEVSNPATGQVFATVPDGNAEDARAAVDAAVA 62 +L L+RQDL+PG LIGA+WR A+DGR L+V++PAT VFA+VPDG A DARAAV+AA A Sbjct: 2 TLTLERQDLLPGQHLIGAEWREASDGRRLDVTDPATDGVFASVPDGTAADARAAVNAAHA 61 Query: 63 AFPAWRATPAKQRATIIKRWNDLLLAHQEDLGRLISREQGKPLAEAKGEVAYAASYVEWF 122 AFPAWRA PAKQRA I+KRWNDL+LAHQEDLGRLISREQGKPLAE +GEVAYAASYVEWF Sbjct: 62 AFPAWRAVPAKQRAQILKRWNDLMLAHQEDLGRLISREQGKPLAEGRGEVAYAASYVEWF 121 Query: 123 GEEATRANGDIIPAPVTGRRMMALKEPVGVVAAITPWNFPAAMIARKIAPALAAGCTVVC 182 GEEATRANGD+IPAPVTGRRM+ALKEPVGVVAAITPWNFPAAMIARKIAPALAAGCTVVC Sbjct: 122 GEEATRANGDVIPAPVTGRRMLALKEPVGVVAAITPWNFPAAMIARKIAPALAAGCTVVC 181 Query: 183 KPAEDTPLTSLALIRLALEAGVPAGVINIVTASRERTPEVVDVWLADGRVRKISFTGSTA 242 KPAEDTPLTSLAL+RLA EAGVPAGV+NIVTASR+RTPEVVDVWLAD RVRKISFTGST Sbjct: 182 KPAEDTPLTSLALVRLAQEAGVPAGVLNIVTASRDRTPEVVDVWLADARVRKISFTGSTP 241 Query: 243 VGKHLARHSADTLKKLSLELGGNAPFIVFDDADLDAAIDGVMAAKFRNGGQTCVSPNRIY 302 VGKHLAR SADTLKKLSLELGGNAPFIVF+DAD+DAA++G+MAAKFRNGGQTCV PNR++ Sbjct: 242 VGKHLARASADTLKKLSLELGGNAPFIVFEDADVDAAVEGLMAAKFRNGGQTCVCPNRVF 301 Query: 303 VQDKVYETFVAKLGARVAALKVGPATDPASQIGPMINARAIGKIDQHVRDAIERGARVIT 362 VQ +V++ FV KL ARV+ALKVGPAT P SQIGPMINARA+ KI++HVRDA+ RGAR++ Sbjct: 302 VQARVHDAFVDKLAARVSALKVGPATAPDSQIGPMINARAVDKIERHVRDAVARGARIVV 361 Query: 363 GGKRLQGPGFESDNYYAPTVLANVTGEMQCSCEETFGPVAPITRFSTEEEVIAAANATPF 422 GG+RL+ + NYYAPTVL N M CSCEETFGPV P+TRF TE EVIAAAN TPF Sbjct: 362 GGERLRSARCDGPNYYAPTVLVNADAGMDCSCEETFGPVVPVTRFETEAEVIAAANDTPF 421 Query: 423 GLAAYFYSTDVRRIHRVTDALESGIVGVNEGALAAEAAPFGGVKESGYGREGSVHGLDDY 482 GLAAYFYSTDVRRI RV +ALESGIVG+NEGALAAEAAPFGGVKESGYGREGSVHGLDDY Sbjct: 422 GLAAYFYSTDVRRIWRVAEALESGIVGINEGALAAEAAPFGGVKESGYGREGSVHGLDDY 481 Query: 483 LHTKYVCQGQL 493 +HTKY+CQG L Sbjct: 482 MHTKYLCQGGL 492 >ref|YP_004152947.1| succinic semialdehyde dehydrogenase [Variovorax paradoxus EPS] gb|ADU34836.1| succinic semialdehyde dehydrogenase [Variovorax paradoxus EPS] Length = 492 Score = 762 bits (1967), Expect = 0.0, Method: Composition-based stats. Identities = 400/490 (81%), Positives = 441/490 (90%) Query: 4 LELQRQDLMPGAQLIGAQWRAAADGRVLEVSNPATGQVFATVPDGNAEDARAAVDAAVAA 63 L LQRQDL+PG LIGA+WR A+D R L+V++PAT VFA+VPDG A DARAAVDAA AA Sbjct: 3 LTLQRQDLLPGLHLIGAEWRDASDARRLDVTDPATDSVFASVPDGTAADARAAVDAAHAA 62 Query: 64 FPAWRATPAKQRATIIKRWNDLLLAHQEDLGRLISREQGKPLAEAKGEVAYAASYVEWFG 123 FPAWRA PAKQRA I+KRWNDL+L HQEDLGRLISREQGKPLAE +GEVAYAASYVEWF Sbjct: 63 FPAWRAVPAKQRAQILKRWNDLMLLHQEDLGRLISREQGKPLAEGRGEVAYAASYVEWFA 122 Query: 124 EEATRANGDIIPAPVTGRRMMALKEPVGVVAAITPWNFPAAMIARKIAPALAAGCTVVCK 183 EEATRANG++IPAPV+GRRM+ALKEPVGVVAAITPWNFPAAMIARKIAPALAAGCTVVCK Sbjct: 123 EEATRANGEVIPAPVSGRRMLALKEPVGVVAAITPWNFPAAMIARKIAPALAAGCTVVCK 182 Query: 184 PAEDTPLTSLALIRLALEAGVPAGVINIVTASRERTPEVVDVWLADGRVRKISFTGSTAV 243 PAEDTPLTSLAL++LA EAGVPAGV+NIVTASRERTPEVVDVWLAD RVRKISFTGST V Sbjct: 183 PAEDTPLTSLALVKLAQEAGVPAGVLNIVTASRERTPEVVDVWLADARVRKISFTGSTPV 242 Query: 244 GKHLARHSADTLKKLSLELGGNAPFIVFDDADLDAAIDGVMAAKFRNGGQTCVSPNRIYV 303 GKHLAR SADTLKKLSLELGGNAPFIVF+DAD+DAA++G+MAAKFRNGGQTCV PNR++V Sbjct: 243 GKHLARASADTLKKLSLELGGNAPFIVFEDADIDAAVEGLMAAKFRNGGQTCVCPNRVFV 302 Query: 304 QDKVYETFVAKLGARVAALKVGPATDPASQIGPMINARAIGKIDQHVRDAIERGARVITG 363 Q KV++ FV KL ARV AL+VGPAT+P SQIGPMINARA+ K+++HVRDA+ RGAR+ G Sbjct: 303 QAKVHDAFVDKLAARVGALQVGPATEPDSQIGPMINARAVDKMERHVRDAVSRGARIAVG 362 Query: 364 GKRLQGPGFESDNYYAPTVLANVTGEMQCSCEETFGPVAPITRFSTEEEVIAAANATPFG 423 G+RL+ + NYYAPTVL N M+CSCEETFGPV P+TRF TE EVIAAAN TPFG Sbjct: 363 GERLRSARCDGPNYYAPTVLVNADASMECSCEETFGPVVPVTRFETEAEVIAAANDTPFG 422 Query: 424 LAAYFYSTDVRRIHRVTDALESGIVGVNEGALAAEAAPFGGVKESGYGREGSVHGLDDYL 483 LAAYFYSTD RRI RVT+ALESGIVGVNEGALAAEAAPFGGVKESGYGREGSVHGLDDY+ Sbjct: 423 LAAYFYSTDARRIWRVTEALESGIVGVNEGALAAEAAPFGGVKESGYGREGSVHGLDDYM 482 Query: 484 HTKYVCQGQL 493 H KYVCQGQL Sbjct: 483 HIKYVCQGQL 492 >ref|YP_004685563.1| NADP+ dependend succinate-semialdehyde dehydrogenase GabD [Cupriavidus necator N-1] gb|AEI77082.1| NADP+ dependend succinate-semialdehyde dehydrogenase GabD [Cupriavidus necator N-1] Length = 493 Score = 738 bits (1904), Expect = 0.0, Method: Composition-based stats. Identities = 379/490 (77%), Positives = 425/490 (86%) Query: 4 LELQRQDLMPGAQLIGAQWRAAADGRVLEVSNPATGQVFATVPDGNAEDARAAVDAAVAA 63 L LQ Q L+PG IG +W AAD R L V++PAT +VFA VPD A DAR AVD A AA Sbjct: 3 LSLQNQALLPGRNYIGGEWCGAADDRTLSVADPATDEVFAAVPDSGAADARRAVDVAHAA 62 Query: 64 FPAWRATPAKQRATIIKRWNDLLLAHQEDLGRLISREQGKPLAEAKGEVAYAASYVEWFG 123 FP+WR TPAKQRA IIKRWNDL+++H EDLGRLISREQGKPLAE KGEV YAASYVEWF Sbjct: 63 FPSWRKTPAKQRAQIIKRWNDLVVSHVEDLGRLISREQGKPLAEGKGEVLYAASYVEWFA 122 Query: 124 EEATRANGDIIPAPVTGRRMMALKEPVGVVAAITPWNFPAAMIARKIAPALAAGCTVVCK 183 EEATRA+GD+I APV GRRM+AL+EPVGV+AAITPWNFPAAMIARKIAPALAAGCTVVCK Sbjct: 123 EEATRADGDVIAAPVPGRRMLALREPVGVIAAITPWNFPAAMIARKIAPALAAGCTVVCK 182 Query: 184 PAEDTPLTSLALIRLALEAGVPAGVINIVTASRERTPEVVDVWLADGRVRKISFTGSTAV 243 PAEDTPLTSLAL+RLA +AGVP GV+NIVTASRER EVVDVWL D RVRKI+FTGST V Sbjct: 183 PAEDTPLTSLALVRLAEQAGVPRGVLNIVTASRERAAEVVDVWLDDARVRKITFTGSTPV 242 Query: 244 GKHLARHSADTLKKLSLELGGNAPFIVFDDADLDAAIDGVMAAKFRNGGQTCVSPNRIYV 303 GKHLAR SADTLKKLSLELGGNAPFIVFDDADLDAA++G+MAAKFRNGGQTCV PNRIYV Sbjct: 243 GKHLARRSADTLKKLSLELGGNAPFIVFDDADLDAAVEGLMAAKFRNGGQTCVCPNRIYV 302 Query: 304 QDKVYETFVAKLGARVAALKVGPATDPASQIGPMINARAIGKIDQHVRDAIERGARVITG 363 QDKV++ FV KL ARV AL V PAT+PA+QIGPM+NARA+ KI++HV+DA+ RGARV+ G Sbjct: 303 QDKVHDAFVEKLAARVGALVVAPATNPAAQIGPMVNARAVDKIERHVKDAVSRGARVVVG 362 Query: 364 GKRLQGPGFESDNYYAPTVLANVTGEMQCSCEETFGPVAPITRFSTEEEVIAAANATPFG 423 G+R++ NYYAPTVL +V M CSCEETFGPVAP+TRF+TE +V+AAANATPFG Sbjct: 363 GERIRNEQCPGPNYYAPTVLVDVDAAMDCSCEETFGPVAPVTRFNTEADVVAAANATPFG 422 Query: 424 LAAYFYSTDVRRIHRVTDALESGIVGVNEGALAAEAAPFGGVKESGYGREGSVHGLDDYL 483 LAAYFYS DVRRI R+ DALESGIVG+NEGALAAEAAPFGGVK+SGYGREGS HGL++Y+ Sbjct: 423 LAAYFYSNDVRRIWRLADALESGIVGINEGALAAEAAPFGGVKDSGYGREGSRHGLEEYM 482 Query: 484 HTKYVCQGQL 493 H KYVCQG L Sbjct: 483 HIKYVCQGLL 492