BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3045.p (470 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774551.1| glycine/D-amino acid oxidase [Herbaspirillum... 770 0.0 ref|YP_004750976.1| FAD dependent oxidoreductase [Collimonas fun... 759 0.0 ref|YP_004685540.1| oxidoreductase OrdL [Cupriavidus necator N-1... 680 0.0 ref|YP_004152941.1| fad dependent oxidoreductase [Variovorax par... 669 0.0 ref|YP_002947491.1| FAD dependent oxidoreductase [Variovorax par... 667 0.0 >ref|YP_003774551.1| glycine/D-amino acid oxidase [Herbaspirillum seropedicae SmR1] gb|ADJ62643.1| glycine/D-amino acid oxidases (deaminating) protein [Herbaspirillum seropedicae SmR1] Length = 430 Score = 770 bits (1988), Expect = 0.0, Method: Composition-based stats. Identities = 392/430 (91%), Positives = 414/430 (96%) Query: 41 MKLESYWTDSAPLFISPTRELPTQVDVAIVGGGFTGLSAALAFAKRGASVVVLEAGPHVA 100 MKLESYWTDSAPL+ISPTR+LP QVDVAIVGGGFTGLSAALA A+RGASVVVLEAGPHVA Sbjct: 1 MKLESYWTDSAPLYISPTRDLPAQVDVAIVGGGFTGLSAALALARRGASVVVLEAGPHVA 60 Query: 101 AEASGRNGGHVNNGLAVDYAEVAAKVGVERARAWYHAYDDAVDTVARLVEQEQIACDFLR 160 AEASGRNGGHVNNGLAVDYAE+AAKVGVERARAWYHAYDDAVDTVARLV++EQI CDFLR Sbjct: 61 AEASGRNGGHVNNGLAVDYAELAAKVGVERARAWYHAYDDAVDTVARLVQEEQIDCDFLR 120 Query: 161 HGKLKMATKPYQMDALQRSADRLLADGVDSDVEILDAARVRAEVQSERFHGGLLYKRSGQ 220 HGKLKMAT+PYQMDALQRSADRL+ADGVD DVEILDA RV+AEVQSERFHGGLLYKRSGQ Sbjct: 121 HGKLKMATRPYQMDALQRSADRLIADGVDLDVEILDAQRVQAEVQSERFHGGLLYKRSGQ 180 Query: 221 MHMGRFAWGLATAAERHGAAIHTGTEVRRLERIGDTHAHRVHTARGTITAKQVLLATGAS 280 MHMGRFA+GLA AAER GAAIHTGTEVRRLERIG TH HR+HT RG + A+QVLLATGAS Sbjct: 181 MHMGRFAYGLAMAAERQGAAIHTGTEVRRLERIGQTHGHRLHTTRGAVLARQVLLATGAS 240 Query: 281 RHGAYGSFGWLRRRIVPIGSFIVVTEPLGAERAAAMLARQRTYTTVANIHHYFRMTPDTR 340 RHGAYGSFGWLRRRIVPIGSFIVVTEPLGA+RAA +L QRTYTTVANIHHYFRMTPDTR Sbjct: 241 RHGAYGSFGWLRRRIVPIGSFIVVTEPLGAQRAATLLKHQRTYTTVANIHHYFRMTPDTR 300 Query: 341 LVFGGRARFAISSPQSDAASGEILRQGLHETFPQLGQVRLDYCWGGLVDMTRDRLPQAGE 400 LVFGGRARFAISSPQSDAASGE+LR+GLHETFPQLGQVRLDYCWGGLVD+TRDRLPQAGE Sbjct: 301 LVFGGRARFAISSPQSDAASGEVLRRGLHETFPQLGQVRLDYCWGGLVDVTRDRLPQAGE 360 Query: 401 RDGLYYSMGYSGHGTQMSVHMGQCMAQVMAGDALANPWREREWPAIPGHFGPPWFLPVIG 460 RDGLYYSMGYSGHGTQMSVHMGQCMA+VMAGDALANPWREREWPAIPGHFG PWFLP++G Sbjct: 361 RDGLYYSMGYSGHGTQMSVHMGQCMAKVMAGDALANPWREREWPAIPGHFGAPWFLPLVG 420 Query: 461 LYYQLKDKLA 470 LYY+LKDKLA Sbjct: 421 LYYRLKDKLA 430 >ref|YP_004750976.1| FAD dependent oxidoreductase [Collimonas fungivorans Ter331] gb|AEK60153.1| FAD dependent oxidoreductase [Collimonas fungivorans Ter331] Length = 453 Score = 759 bits (1959), Expect = 0.0, Method: Composition-based stats. Identities = 383/431 (88%), Positives = 407/431 (94%) Query: 40 TMKLESYWTDSAPLFISPTRELPTQVDVAIVGGGFTGLSAALAFAKRGASVVVLEAGPHV 99 TMKLESYWTDSAP++ISP RELP QVDVAIVGGGFTGLSAAL+ AKRGASVVVLEAGPHV Sbjct: 23 TMKLESYWTDSAPVYISPARELPAQVDVAIVGGGFTGLSAALSLAKRGASVVVLEAGPHV 82 Query: 100 AAEASGRNGGHVNNGLAVDYAEVAAKVGVERARAWYHAYDDAVDTVARLVEQEQIACDFL 159 AAEASGRNGGHVNNGLAVDYAEVAAKVGVERARAWYHAYDDAVDTVA+LVEQEQIACDF Sbjct: 83 AAEASGRNGGHVNNGLAVDYAEVAAKVGVERARAWYHAYDDAVDTVAQLVEQEQIACDFR 142 Query: 160 RHGKLKMATKPYQMDALQRSADRLLADGVDSDVEILDAARVRAEVQSERFHGGLLYKRSG 219 RHGKLK+AT+P QM+ALQRSA+RL+ADGVD DV +LDAA+VRAEVQSERFHGGLLYKRS Sbjct: 143 RHGKLKLATRPSQMEALQRSAERLIADGVDLDVAVLDAAQVRAEVQSERFHGGLLYKRSA 202 Query: 220 QMHMGRFAWGLATAAERHGAAIHTGTEVRRLERIGDTHAHRVHTARGTITAKQVLLATGA 279 QMHMGRFA+GLA AAE+HGA IHTGTEVRRLERIGDT AHRVHTARGTI AKQVLLATGA Sbjct: 203 QMHMGRFAYGLALAAEKHGAVIHTGTEVRRLERIGDTRAHRVHTARGTILAKQVLLATGA 262 Query: 280 SRHGAYGSFGWLRRRIVPIGSFIVVTEPLGAERAAAMLARQRTYTTVANIHHYFRMTPDT 339 S HG+Y +FGWLRRRIVPIGSFIV T PLGAERAAA+LA+QRTYTTVANIHHYFRMTPD Sbjct: 263 SLHGSYSTFGWLRRRIVPIGSFIVATAPLGAERAAALLAQQRTYTTVANIHHYFRMTPDH 322 Query: 340 RLVFGGRARFAISSPQSDAASGEILRQGLHETFPQLGQVRLDYCWGGLVDMTRDRLPQAG 399 RL+FGGRARFAISSPQSDAASGEILR GL +TFPQLG+V LDYCWGGLVDMTRDRLPQAG Sbjct: 323 RLIFGGRARFAISSPQSDAASGEILRAGLMQTFPQLGKVDLDYCWGGLVDMTRDRLPQAG 382 Query: 400 ERDGLYYSMGYSGHGTQMSVHMGQCMAQVMAGDALANPWREREWPAIPGHFGPPWFLPVI 459 ERDGLYYSMGYSGHGTQMSVHMGQCMA M+GDA ANPWRER+WPAIPGH GPPWFLP+I Sbjct: 383 ERDGLYYSMGYSGHGTQMSVHMGQCMAAAMSGDASANPWRERDWPAIPGHVGPPWFLPLI 442 Query: 460 GLYYQLKDKLA 470 G+YYQLKDKLA Sbjct: 443 GMYYQLKDKLA 453 >ref|YP_004685540.1| oxidoreductase OrdL [Cupriavidus necator N-1] gb|AEI77059.1| oxidoreductase OrdL [Cupriavidus necator N-1] Length = 429 Score = 680 bits (1754), Expect = 0.0, Method: Composition-based stats. Identities = 353/430 (82%), Positives = 383/430 (89%), Gaps = 1/430 (0%) Query: 41 MKLESYWTDSAPLFISPTRELPTQVDVAIVGGGFTGLSAALAFAKRGASVVVLEAGPHVA 100 MKL+SYW DS P ELP QVDVAIVGGGFTGLSAALA A+ GASVVVLEAG VA Sbjct: 1 MKLDSYWNDSVPTLALDAHELPPQVDVAIVGGGFTGLSAALALARHGASVVVLEAGATVA 60 Query: 101 AEASGRNGGHVNNGLAVDYAEVAAKVGVERARAWYHAYDDAVDTVARLVEQEQIACDFLR 160 EASGRNGGHVNNGLAVDYAE+AA+VGVERAR WYHAYDDAVDTV R+V E IACDF R Sbjct: 61 PEASGRNGGHVNNGLAVDYAELAARVGVERARGWYHAYDDAVDTVERIVRDEGIACDFQR 120 Query: 161 HGKLKMATKPYQMDALQRSADRLLADGVDSDVEILDAARVRAEVQSERFHGGLLYKRSGQ 220 +GKLK+ATK +QM+AL+RSA+RL+ADGVD+DVEILDAARVRAEVQSERFHGGLLYKRSGQ Sbjct: 121 NGKLKLATKAHQMEALRRSAERLVADGVDTDVEILDAARVRAEVQSERFHGGLLYKRSGQ 180 Query: 221 MHMGRFAWGLATAAERHGAAIHTGTEVRRLERIGDTHAHRVHTARGTITAKQVLLATGAS 280 MHMGRFA GLA AA+RHGA IHTGT VRR+ER+ HR+HTARGT+ A+QVLLATGAS Sbjct: 181 MHMGRFAQGLAVAAQRHGAQIHTGTCVRRIERV-QGQVHRLHTARGTVLARQVLLATGAS 239 Query: 281 RHGAYGSFGWLRRRIVPIGSFIVVTEPLGAERAAAMLARQRTYTTVANIHHYFRMTPDTR 340 RHG YGSFGWLRRRIVPIGSFIV TEPLGAERA A+LA++RTY TVANIHHYFR+TPD R Sbjct: 240 RHGGYGSFGWLRRRIVPIGSFIVTTEPLGAERARALLAKRRTYVTVANIHHYFRLTPDHR 299 Query: 341 LVFGGRARFAISSPQSDAASGEILRQGLHETFPQLGQVRLDYCWGGLVDMTRDRLPQAGE 400 LVFGGRARFA+SSPQ DAASGEILR GL E FPQLG VRLDYCWGGLVDMT+DRLP AGE Sbjct: 300 LVFGGRARFAVSSPQQDAASGEILRAGLAEIFPQLGNVRLDYCWGGLVDMTQDRLPHAGE 359 Query: 401 RDGLYYSMGYSGHGTQMSVHMGQCMAQVMAGDALANPWREREWPAIPGHFGPPWFLPVIG 460 RDGL+YSMGYSGHGTQMSVHMG+ MA VMAGDA ANPWRER+WPAIPGHFGPPWFLP +G Sbjct: 360 RDGLFYSMGYSGHGTQMSVHMGERMAAVMAGDAAANPWRERDWPAIPGHFGPPWFLPAVG 419 Query: 461 LYYQLKDKLA 470 LYYQLKD+LA Sbjct: 420 LYYQLKDRLA 429 >ref|YP_004152941.1| fad dependent oxidoreductase [Variovorax paradoxus EPS] gb|ADU34830.1| FAD dependent oxidoreductase [Variovorax paradoxus EPS] Length = 430 Score = 669 bits (1726), Expect = 0.0, Method: Composition-based stats. Identities = 350/430 (81%), Positives = 385/430 (89%) Query: 41 MKLESYWTDSAPLFISPTRELPTQVDVAIVGGGFTGLSAALAFAKRGASVVVLEAGPHVA 100 MKL+SYWTDSAP F LP QVDVAIVGGGFTGLSAALAFA+RGA V VLEAG VA Sbjct: 1 MKLDSYWTDSAPAFAPAACALPGQVDVAIVGGGFTGLSAALAFARRGARVAVLEAGTRVA 60 Query: 101 AEASGRNGGHVNNGLAVDYAEVAAKVGVERARAWYHAYDDAVDTVARLVEQEQIACDFLR 160 AEASGRNGGHVNNGLAVDYA+VAAKVGVE+ARAWYHAYD +VD VARLV E+I CDF+R Sbjct: 61 AEASGRNGGHVNNGLAVDYADVAAKVGVEKARAWYHAYDASVDAVARLVRDEEIDCDFMR 120 Query: 161 HGKLKMATKPYQMDALQRSADRLLADGVDSDVEILDAARVRAEVQSERFHGGLLYKRSGQ 220 HGKLK+AT+ QMDAL+RSA RL+ DGVD++VEILDAARVR EVQS+RFHGGLLYKRSGQ Sbjct: 121 HGKLKLATRASQMDALERSAQRLVDDGVDTEVEILDAARVRGEVQSDRFHGGLLYKRSGQ 180 Query: 221 MHMGRFAWGLATAAERHGAAIHTGTEVRRLERIGDTHAHRVHTARGTITAKQVLLATGAS 280 MHMGRFA GLATAA+RHGA IHT T V R+ER+G HAHR+HTARG++TA+QVLLATGAS Sbjct: 181 MHMGRFAHGLATAAQRHGAQIHTSTAVERIERLGQGHAHRLHTARGSVTAQQVLLATGAS 240 Query: 281 RHGAYGSFGWLRRRIVPIGSFIVVTEPLGAERAAAMLARQRTYTTVANIHHYFRMTPDTR 340 RHG YGSFGWLRRRIVPIGSFIVVTEPLGAERA A+LA +RTYTTVANIHHYFR+T D R Sbjct: 241 RHGGYGSFGWLRRRIVPIGSFIVVTEPLGAERAHALLAARRTYTTVANIHHYFRLTADHR 300 Query: 341 LVFGGRARFAISSPQSDAASGEILRQGLHETFPQLGQVRLDYCWGGLVDMTRDRLPQAGE 400 LVFGGRARFAISSPQSDAASGEILR GL +TFPQLG VRLDYCWGGLVD+T+DRLP AGE Sbjct: 301 LVFGGRARFAISSPQSDAASGEILRAGLAQTFPQLGAVRLDYCWGGLVDITQDRLPHAGE 360 Query: 401 RDGLYYSMGYSGHGTQMSVHMGQCMAQVMAGDALANPWREREWPAIPGHFGPPWFLPVIG 460 R+GLYY+MGYSGHGTQMSVHMG+ MA VM GDA ANPWR+R WPAIPGHFG PWFLP +G Sbjct: 361 RNGLYYAMGYSGHGTQMSVHMGERMAAVMNGDANANPWRDRAWPAIPGHFGAPWFLPAVG 420 Query: 461 LYYQLKDKLA 470 +YY+LKD+LA Sbjct: 421 MYYRLKDRLA 430 >ref|YP_002947491.1| FAD dependent oxidoreductase [Variovorax paradoxus S110] gb|ACS22225.1| FAD dependent oxidoreductase [Variovorax paradoxus S110] Length = 430 Score = 667 bits (1721), Expect = 0.0, Method: Composition-based stats. Identities = 348/430 (80%), Positives = 383/430 (89%) Query: 41 MKLESYWTDSAPLFISPTRELPTQVDVAIVGGGFTGLSAALAFAKRGASVVVLEAGPHVA 100 MKL+SYWTDSAP F+ LP QVDVAIVGGGFTGLSAALA A+RGA V VLEAG VA Sbjct: 1 MKLDSYWTDSAPAFVPAVHALPAQVDVAIVGGGFTGLSAALALARRGARVAVLEAGSRVA 60 Query: 101 AEASGRNGGHVNNGLAVDYAEVAAKVGVERARAWYHAYDDAVDTVARLVEQEQIACDFLR 160 AEASGRNGGHVNNGLAVDYA+VAAKVG ++ARAWY AYDDAVDTVARLV E I CDF+R Sbjct: 61 AEASGRNGGHVNNGLAVDYADVAAKVGTDKARAWYRAYDDAVDTVARLVRDEAIDCDFMR 120 Query: 161 HGKLKMATKPYQMDALQRSADRLLADGVDSDVEILDAARVRAEVQSERFHGGLLYKRSGQ 220 HGKLK+AT+ QM AL+RSA+RL+ DGVD+DVEIL+AA+VR+EVQSERFHGGLLYKRSGQ Sbjct: 121 HGKLKLATRANQMAALERSAERLVGDGVDTDVEILNAAQVRSEVQSERFHGGLLYKRSGQ 180 Query: 221 MHMGRFAWGLATAAERHGAAIHTGTEVRRLERIGDTHAHRVHTARGTITAKQVLLATGAS 280 MHMGRFA GLA AAERHGA IHTGT V R+ER+G HAHR+HTA G +TA+QVLLATGA+ Sbjct: 181 MHMGRFAHGLAEAAERHGAQIHTGTAVNRIERLGQGHAHRLHTAGGIVTAQQVLLATGAT 240 Query: 281 RHGAYGSFGWLRRRIVPIGSFIVVTEPLGAERAAAMLARQRTYTTVANIHHYFRMTPDTR 340 RHG YGSFGWLRRRIVPIGSFIVVTEPLGAERA A+LA +RTYTTVANIHHYFR+T D R Sbjct: 241 RHGGYGSFGWLRRRIVPIGSFIVVTEPLGAERAQALLAARRTYTTVANIHHYFRLTADHR 300 Query: 341 LVFGGRARFAISSPQSDAASGEILRQGLHETFPQLGQVRLDYCWGGLVDMTRDRLPQAGE 400 LVFGGRARF++SSPQ+DAASGEILR GL ETFPQLG VRLDYCWGGLVDMT+DRLP AGE Sbjct: 301 LVFGGRARFSVSSPQADAASGEILRAGLAETFPQLGAVRLDYCWGGLVDMTQDRLPHAGE 360 Query: 401 RDGLYYSMGYSGHGTQMSVHMGQCMAQVMAGDALANPWREREWPAIPGHFGPPWFLPVIG 460 RDGLYY+MGYSGHGTQMSVHMG+ MA VM G+A ANPW++R WPAIPGHFGPPWFLP +G Sbjct: 361 RDGLYYAMGYSGHGTQMSVHMGERMAAVMEGNAAANPWQDRGWPAIPGHFGPPWFLPAMG 420 Query: 461 LYYQLKDKLA 470 LYY LKDKLA Sbjct: 421 LYYSLKDKLA 430