BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3044.p (308 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774552.1| D-3-phosphoglycerate dehydrogenase [Herbaspi... 580 e-164 ref|YP_004750977.1| D-3-phosphoglycerate dehydrogenase [Collimon... 528 e-148 ref|YP_970534.1| D-isomer specific 2-hydroxyacid dehydrogenase [... 443 e-122 ref|YP_546918.1| D-isomer specific 2-hydroxyacid dehydrogenase [... 412 e-113 ref|ZP_06839042.1| D-isomer specific 2-hydroxyacid dehydrogenase... 405 e-111 >ref|YP_003774552.1| D-3-phosphoglycerate dehydrogenase [Herbaspirillum seropedicae SmR1] gb|ADJ62644.1| D-3-phosphoglycerate dehydrogenase protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 580 bits (1496), Expect = e-164, Method: Composition-based stats. Identities = 287/308 (93%), Positives = 298/308 (96%) Query: 1 MTFLYKADPVRGAEWAQLFAEKAPELPFHIWPHEGDGSSVRYLAAWTPPEDIAQHFPHLE 60 MTFLYKADPVRGAEWAQLFA+KAPELPF IWPH+GDG+SVRYLAAWTPP+DIA+ FP LE Sbjct: 1 MTFLYKADPVRGAEWAQLFAQKAPELPFQIWPHDGDGASVRYLAAWTPPDDIAERFPKLE 60 Query: 61 ILFSVGAGIDQFDMSTLPPDLPVVRMTEPGIAAGMVQYVTHAVLGLHRDSRIYARQQRDQ 120 ILFSVGAGIDQFDMSTLPP LPVVRMTEPGIAAGMVQYVTHAVLGLHRDSR+YARQQRDQ Sbjct: 61 ILFSVGAGIDQFDMSTLPPALPVVRMTEPGIAAGMVQYVTHAVLGLHRDSRVYARQQRDQ 120 Query: 121 VWRAHRVRPASACRVGVLGLGMLGRAVLQQLHGLGFPCAGWSRSAHQMDGIDCYSGSDGL 180 VWRAHRVRPASACRVGVLGLGMLGRAVLQQLHGLGFPCAGWSRSAHQMDGIDCYSGS GL Sbjct: 121 VWRAHRVRPASACRVGVLGLGMLGRAVLQQLHGLGFPCAGWSRSAHQMDGIDCYSGSAGL 180 Query: 181 RDFLARTDVLVCLVPLTDDTRGLLNRELFAQLPRGAALVNVGRGGHLVEDDLLAALNDGQ 240 R FLARTDVLVCLVPLT++TRGLL R+LFAQLPRGAAL+NVGRGGHLVEDDLLAALNDGQ Sbjct: 181 RAFLARTDVLVCLVPLTEETRGLLCRDLFAQLPRGAALINVGRGGHLVEDDLLAALNDGQ 240 Query: 241 LSAAVLDVCETEPLPQGHPFWTHPDIVLTPHIASMTQPDGAVDAVLENLRRHRAGLPLLG 300 LSAAVLDVCE EPLP GHPFWTHPDIVLTPHIASMTQPDGAVDAVLENLRR+R GLPLLG Sbjct: 241 LSAAVLDVCEVEPLPPGHPFWTHPDIVLTPHIASMTQPDGAVDAVLENLRRYREGLPLLG 300 Query: 301 LIDRQRGY 308 LIDRQRGY Sbjct: 301 LIDRQRGY 308 >ref|YP_004750977.1| D-3-phosphoglycerate dehydrogenase [Collimonas fungivorans Ter331] gb|AEK60154.1| D-3-phosphoglycerate dehydrogenase [Collimonas fungivorans Ter331] Length = 337 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 261/308 (84%), Positives = 286/308 (92%) Query: 1 MTFLYKADPVRGAEWAQLFAEKAPELPFHIWPHEGDGSSVRYLAAWTPPEDIAQHFPHLE 60 MTFLYKAD RGAEW +LFA+KAPELPFH+WP+EGD +SVRYLAAWTPPEDIA+ FP+LE Sbjct: 30 MTFLYKADLERGAEWGRLFAQKAPELPFHLWPYEGDPASVRYLAAWTPPEDIARRFPNLE 89 Query: 61 ILFSVGAGIDQFDMSTLPPDLPVVRMTEPGIAAGMVQYVTHAVLGLHRDSRIYARQQRDQ 120 ILFSVGAGIDQFDMS LPP+L VVRMTEPGIAAGMVQYVTHAVLGLHRDSR YARQQ+ Q Sbjct: 90 ILFSVGAGIDQFDMSGLPPELAVVRMTEPGIAAGMVQYVTHAVLGLHRDSRHYARQQQQQ 149 Query: 121 VWRAHRVRPASACRVGVLGLGMLGRAVLQQLHGLGFPCAGWSRSAHQMDGIDCYSGSDGL 180 +W+A RVRPASACR+GVLGLGMLGRAVLQQLHGLGFPCAGWSRS HQ+DG++C+SG DGL Sbjct: 150 IWQARRVRPASACRIGVLGLGMLGRAVLQQLHGLGFPCAGWSRSPHQIDGVECHSGCDGL 209 Query: 181 RDFLARTDVLVCLVPLTDDTRGLLNRELFAQLPRGAALVNVGRGGHLVEDDLLAALNDGQ 240 FLAR+DVL+CL+PLTDDTRG+L R LFAQLPRGA L+NVGRGGHLVEDDLLAAL DGQ Sbjct: 210 DHFLARSDVLICLLPLTDDTRGILCRALFAQLPRGATLINVGRGGHLVEDDLLAALQDGQ 269 Query: 241 LSAAVLDVCETEPLPQGHPFWTHPDIVLTPHIASMTQPDGAVDAVLENLRRHRAGLPLLG 300 LSAAVLDVC TEPLP GHPFW PDIV+TPH+ASMTQPDGAVDAVLENLRRHRAG+PLLG Sbjct: 270 LSAAVLDVCNTEPLPAGHPFWRRPDIVITPHVASMTQPDGAVDAVLENLRRHRAGMPLLG 329 Query: 301 LIDRQRGY 308 LIDR+RGY Sbjct: 330 LIDRRRGY 337 >ref|YP_970534.1| D-isomer specific 2-hydroxyacid dehydrogenase [Acidovorax citrulli AAC00-1] gb|ABM32760.1| D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein [Acidovorax citrulli AAC00-1] Length = 308 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 212/308 (68%), Positives = 253/308 (82%) Query: 1 MTFLYKADPVRGAEWAQLFAEKAPELPFHIWPHEGDGSSVRYLAAWTPPEDIAQHFPHLE 60 M+FLYK+DPVRGA WA+ FA P+LPF IWP GD VRYLAAW PP+D+A FP+LE Sbjct: 1 MSFLYKSDPVRGAVWAERFALAMPDLPFRIWPDVGDARDVRYLAAWEPPQDLAARFPNLE 60 Query: 61 ILFSVGAGIDQFDMSTLPPDLPVVRMTEPGIAAGMVQYVTHAVLGLHRDSRIYARQQRDQ 120 +LFS GAG+DQFD S LPP LP+VRM EPGI GMV+YVT AVL +HRD Y QQR + Sbjct: 61 VLFSTGAGVDQFDFSALPPGLPIVRMVEPGIVQGMVEYVTMAVLSVHRDLHTYLGQQRAK 120 Query: 121 VWRAHRVRPASACRVGVLGLGMLGRAVLQQLHGLGFPCAGWSRSAHQMDGIDCYSGSDGL 180 W+ HRV PAS+ RVGVLGLG LGRAVL++LHG GF CAGWSRS +++GI C++G DGL Sbjct: 121 SWQPHRVHPASSRRVGVLGLGTLGRAVLERLHGFGFACAGWSRSPQRIEGIACHAGPDGL 180 Query: 181 RDFLARTDVLVCLVPLTDDTRGLLNRELFAQLPRGAALVNVGRGGHLVEDDLLAALNDGQ 240 R FLARTD+LVCL+PLT DTRG+L R++F QLPRGA ++NVGRGGHLV+DDLL AL+ GQ Sbjct: 181 RGFLARTDILVCLLPLTGDTRGILCRQVFDQLPRGATVINVGRGGHLVQDDLLHALDAGQ 240 Query: 241 LSAAVLDVCETEPLPQGHPFWTHPDIVLTPHIASMTQPDGAVDAVLENLRRHRAGLPLLG 300 L+ A+LDVCE EPLP HPFWTHP +VLTPHIASMTQP+ AVDA+++NLRRHR GLP++G Sbjct: 241 LAGAILDVCEPEPLPPQHPFWTHPKVVLTPHIASMTQPETAVDALIDNLRRHREGLPMVG 300 Query: 301 LIDRQRGY 308 L+DR RGY Sbjct: 301 LVDRSRGY 308 >ref|YP_546918.1| D-isomer specific 2-hydroxyacid dehydrogenase [Polaromonas sp. JS666] gb|ABE42020.1| D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein [Polaromonas sp. JS666] Length = 308 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 200/308 (64%), Positives = 241/308 (78%) Query: 1 MTFLYKADPVRGAEWAQLFAEKAPELPFHIWPHEGDGSSVRYLAAWTPPEDIAQHFPHLE 60 MTFLYKADP RGA W QLFA+KAP+ F IWP GD VR+LAAW PP+DI + FP+LE Sbjct: 1 MTFLYKADPERGAVWRQLFAQKAPQREFRIWPDIGDPERVRFLAAWEPPKDIEKTFPNLE 60 Query: 61 ILFSVGAGIDQFDMSTLPPDLPVVRMTEPGIAAGMVQYVTHAVLGLHRDSRIYARQQRDQ 120 +LFS+GAG+DQFD+S LPP+LPVVRM EPG+ GMV+Y AVLGLHR+ +Y RQQR Sbjct: 61 VLFSIGAGVDQFDLSVLPPELPVVRMVEPGLVHGMVEYACFAVLGLHRNIPLYQRQQRAA 120 Query: 121 VWRAHRVRPASACRVGVLGLGMLGRAVLQQLHGLGFPCAGWSRSAHQMDGIDCYSGSDGL 180 W+A V PA+ RVGVLGLG LG+AVL QL GF CAGWSRS H ++G+ C++G D L Sbjct: 121 RWQALPVMPAAERRVGVLGLGSLGQAVLAQLRTFGFDCAGWSRSQHHVEGVQCFAGQDSL 180 Query: 181 RDFLARTDVLVCLVPLTDDTRGLLNRELFAQLPRGAALVNVGRGGHLVEDDLLAALNDGQ 240 DFLARTD+L+CL+PLT +TRG+LN +FA LP+GAALV+VGRG HLV DDLL AL GQ Sbjct: 181 PDFLARTDILICLLPLTPETRGMLNHRIFAGLPQGAALVHVGRGQHLVTDDLLGALASGQ 240 Query: 241 LSAAVLDVCETEPLPQGHPFWTHPDIVLTPHIASMTQPDGAVDAVLENLRRHRAGLPLLG 300 LS AV+DVC+ EP P GHPFW HP+I LTPHI SMTQP+ AVD +L+NLRR+ AG + G Sbjct: 241 LSEAVIDVCDPEPPPAGHPFWQHPNIWLTPHIGSMTQPESAVDVMLDNLRRYEAGETMTG 300 Query: 301 LIDRQRGY 308 L++R RGY Sbjct: 301 LVNRTRGY 308 >ref|ZP_06839042.1| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding [Burkholderia sp. Ch1-1] gb|EFG73488.1| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding [Burkholderia sp. Ch1-1] Length = 308 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 198/308 (64%), Positives = 242/308 (78%) Query: 1 MTFLYKADPVRGAEWAQLFAEKAPELPFHIWPHEGDGSSVRYLAAWTPPEDIAQHFPHLE 60 M FLYKADP RGA+WA+LFA+KAPELPFHIWP GD +++RYLAAW PPED + FP+LE Sbjct: 1 MAFLYKADPARGAQWAKLFAQKAPELPFHIWPDLGDPAAIRYLAAWQPPEDPTRTFPNLE 60 Query: 61 ILFSVGAGIDQFDMSTLPPDLPVVRMTEPGIAAGMVQYVTHAVLGLHRDSRIYARQQRDQ 120 ++FSVGAG+DQFD+S +P +PVVRM EPGI GMV+YVT VL +HRD YA QQR Q Sbjct: 61 VVFSVGAGVDQFDLSGVPDHVPVVRMIEPGIVEGMVEYVTQTVLTIHRDLFDYALQQRRQ 120 Query: 121 VWRAHRVRPASACRVGVLGLGMLGRAVLQQLHGLGFPCAGWSRSAHQMDGIDCYSGSDGL 180 VWR ++PAS RVGVLGLG+LG AVL++L GF CAGWSRSA +++G+ CY+G Sbjct: 121 VWRELPLKPASQRRVGVLGLGILGTAVLERLRLFGFDCAGWSRSAREIEGVACYAGEGAR 180 Query: 181 RDFLARTDVLVCLVPLTDDTRGLLNRELFAQLPRGAALVNVGRGGHLVEDDLLAALNDGQ 240 FLARTD+L+CL+PLT TRGLL+ +LFA+LPRGA+L+ GRG HL + DLLAAL GQ Sbjct: 181 DAFLARTDILICLLPLTPATRGLLDAQLFAKLPRGASLIQTGRGPHLNQQDLLAALESGQ 240 Query: 241 LSAAVLDVCETEPLPQGHPFWTHPDIVLTPHIASMTQPDGAVDAVLENLRRHRAGLPLLG 300 L A+LDV + EPLP GH WTHP + +TPHIAS T+P+ AV+ VLENLRRHR GLP+LG Sbjct: 241 LQNAILDVTDPEPLPAGHALWTHPRVRITPHIASATRPETAVEVVLENLRRHREGLPMLG 300 Query: 301 LIDRQRGY 308 IDR +GY Sbjct: 301 QIDRAQGY 308