BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3041.p (540 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774555.1| dipeptide ABC transporter periplasmic peptid... 1045 0.0 ref|YP_004750980.1| ABC peptide/opine/nickel family transporter,... 973 0.0 ref|YP_004685541.1| glutathione ABC transporter substrate bindin... 665 0.0 ref|YP_546923.1| extracellular solute-binding protein [Polaromon... 664 0.0 ref|YP_004685559.1| ABC transporter substrate-binding protein [C... 658 0.0 >ref|YP_003774555.1| dipeptide ABC transporter periplasmic peptide-binding protein [Herbaspirillum seropedicae SmR1] gb|ADJ62647.1| ABC-type dipeptide transporter, periplasmic peptide-binding protein [Herbaspirillum seropedicae SmR1] Length = 540 Score = 1045 bits (2703), Expect = 0.0, Method: Composition-based stats. Identities = 516/540 (95%), Positives = 525/540 (97%) Query: 1 MSKQENGHHPKEGSIITGDALDQAPGGFTRRDMMRTLLAGSLMTVGGTGLLTASGSVMAQ 60 MSKQENG HP+EGSIIT L+ A GGF+RRDMMRTLLAGSLMTVGGTGLLTASGSVMAQ Sbjct: 1 MSKQENGRHPQEGSIITSHTLEHAQGGFSRRDMMRTLLAGSLMTVGGTGLLTASGSVMAQ 60 Query: 61 TGKRGGKMRIATQTSSTADTLDPAKTAHSTDYTRVHMFYNGLTKLDGKLAPQMVLAEEML 120 TGKRGGKMRIATQTSSTADTLDPAKTAHSTDYTRVHMFYNGLTKLDGKL PQMVLAEEML Sbjct: 61 TGKRGGKMRIATQTSSTADTLDPAKTAHSTDYTRVHMFYNGLTKLDGKLGPQMVLAEEML 120 Query: 121 TTDAITWTVKLRKGVVFHDGKPFTPADVVYSIMRHKDPATASKVKVVADQFESVKATGPN 180 T DA+TWTVKLRKGV FHDGKP TPADVVYSIMRHKDPATASKVKVVADQFESVKATGPN Sbjct: 121 TNDAVTWTVKLRKGVNFHDGKPLTPADVVYSIMRHKDPATASKVKVVADQFESVKATGPN 180 Query: 181 EVQIKLTSANADLPVILATAQFLIIRDGTTNFSTPNGTGAFKLKEFTPGVRTIGVRNENY 240 EVQIKLTSANADLPVILATAQFLIIRDGTTNFSTPNGTGAFKLKEFTPGVRTIGVRNENY Sbjct: 181 EVQIKLTSANADLPVILATAQFLIIRDGTTNFSTPNGTGAFKLKEFTPGVRTIGVRNENY 240 Query: 241 WKTGLPYLDEVELFGIPDEAARVNALLSGDVHWINDVNARSTGRVKGTPGYTVMETKSGQ 300 WK GLPYLDEVELFGIPDEAARVNALLSGDVHWINDVN+RSTGRVK TPGYTVMETKSGQ Sbjct: 241 WKPGLPYLDEVELFGIPDEAARVNALLSGDVHWINDVNSRSTGRVKNTPGYTVMETKSGQ 300 Query: 301 YTDLVIRQDQAPGNSMDFTLGMKYLLDREQIKMAAFRGYAVTANDQPIDPTNRFYFAGLP 360 YTDLV+RQD APGNSMDFTLGMKYLLDREQIKMAAFRGYAV ANDQPIDPTNRFYFAGLP Sbjct: 301 YTDLVMRQDVAPGNSMDFTLGMKYLLDREQIKMAAFRGYAVIANDQPIDPTNRFYFAGLP 360 Query: 361 QRPFDPEKAKFHLEKAGVLGSTIPIVASVAATGSVDMAVLMQQSAAKIGLKLDVKRVPAD 420 QRP+DP+KAKFHL KAGVLGSTIPIVASVAATGSVDMAVLMQQSAAKIGLKLDVKRVPAD Sbjct: 361 QRPYDPDKAKFHLGKAGVLGSTIPIVASVAATGSVDMAVLMQQSAAKIGLKLDVKRVPAD 420 Query: 421 GYWSNQWMKVPVGFGNINPRPSADILLTQFFKSDAQWNESGWKNPQFDQLVVAARGETDF 480 GYWSNQWMKVPVGFGNINPRPSADILLTQFFKSDAQWNESGWKNPQFDQLVVAARGETDF Sbjct: 421 GYWSNQWMKVPVGFGNINPRPSADILLTQFFKSDAQWNESGWKNPQFDQLVVAARGETDF 480 Query: 481 TKRKAMYADLQTMIHEKCGLGIPVFIINLEGMSTKVKGIDPVPLGAFMNYTCAEYVWLDA 540 TKRKAMYADLQTMIHEKCGLGIPVFIINLEG+STKVKGIDPVPLGAFMNYTCAEYVWLDA Sbjct: 481 TKRKAMYADLQTMIHEKCGLGIPVFIINLEGISTKVKGIDPVPLGAFMNYTCAEYVWLDA 540 >ref|YP_004750980.1| ABC peptide/opine/nickel family transporter, periplasmic ligand binding protein [Collimonas fungivorans Ter331] gb|AEK60157.1| ABC peptide/opine/nickel family transporter, periplasmic ligand binding protein [Collimonas fungivorans Ter331] Length = 544 Score = 973 bits (2515), Expect = 0.0, Method: Composition-based stats. Identities = 472/540 (87%), Positives = 506/540 (93%) Query: 1 MSKQENGHHPKEGSIITGDALDQAPGGFTRRDMMRTLLAGSLMTVGGTGLLTASGSVMAQ 60 MSKQENG +P EG+IITGD+L+ GGFTRRDMMRTLLAGSLMT+G GLL+ASGS MA Sbjct: 5 MSKQENGRYPTEGNIITGDSLENERGGFTRRDMMRTLLAGSLMTMGSAGLLSASGSAMAL 64 Query: 61 TGKRGGKMRIATQTSSTADTLDPAKTAHSTDYTRVHMFYNGLTKLDGKLAPQMVLAEEML 120 KRGGKMRIATQTSSTADTLDPAKTAHSTDYTRVHMFYNGLTKLDGKL PQMVLAEEML Sbjct: 65 PPKRGGKMRIATQTSSTADTLDPAKTAHSTDYTRVHMFYNGLTKLDGKLGPQMVLAEEML 124 Query: 121 TTDAITWTVKLRKGVVFHDGKPFTPADVVYSIMRHKDPATASKVKVVADQFESVKATGPN 180 TTDA WTVKLRKGV+FHDGKPF PADVVYS+MRHKDPATASKVKV+ADQ ESVK TGPN Sbjct: 125 TTDATLWTVKLRKGVLFHDGKPFAPADVVYSLMRHKDPATASKVKVLADQIESVKTTGPN 184 Query: 181 EVQIKLTSANADLPVILATAQFLIIRDGTTNFSTPNGTGAFKLKEFTPGVRTIGVRNENY 240 EVQIKLTSANADLPVILATAQFLI+RDGTT+F+TPNGTGAFK KEFTPGVRTI VRNENY Sbjct: 185 EVQIKLTSANADLPVILATAQFLIVRDGTTSFTTPNGTGAFKCKEFTPGVRTIAVRNENY 244 Query: 241 WKTGLPYLDEVELFGIPDEAARVNALLSGDVHWINDVNARSTGRVKGTPGYTVMETKSGQ 300 WK+GLPYLDEVELFGIPDEAARVNALLSGDVHWINDVNARSTGR+K T GYTVMETKSG Sbjct: 245 WKSGLPYLDEVELFGIPDEAARVNALLSGDVHWINDVNARSTGRIKSTAGYTVMETKSGL 304 Query: 301 YTDLVIRQDQAPGNSMDFTLGMKYLLDREQIKMAAFRGYAVTANDQPIDPTNRFYFAGLP 360 YTDLVIRQD APGNS DFTLGMKYL+DREQIK AAFRG+AVTANDQPIDPTNRFYFAGLP Sbjct: 305 YTDLVIRQDAAPGNSQDFTLGMKYLMDREQIKTAAFRGFAVTANDQPIDPTNRFYFAGLP 364 Query: 361 QRPFDPEKAKFHLEKAGVLGSTIPIVASVAATGSVDMAVLMQQSAAKIGLKLDVKRVPAD 420 QRP+DP+KAKFHL+KAGVLGS+IP+VASVAATGSVD+ VLMQQSA KIGLKLD+KRVPAD Sbjct: 365 QRPYDPDKAKFHLQKAGVLGSSIPLVASVAATGSVDIGVLMQQSAQKIGLKLDLKRVPAD 424 Query: 421 GYWSNQWMKVPVGFGNINPRPSADILLTQFFKSDAQWNESGWKNPQFDQLVVAARGETDF 480 GYW+NQWMKVP+GFGNINPRPSADIL TQFFKSDAQWNESGWKN QFDQLVVAARGETDF Sbjct: 425 GYWANQWMKVPLGFGNINPRPSADILFTQFFKSDAQWNESGWKNAQFDQLVVAARGETDF 484 Query: 481 TKRKAMYADLQTMIHEKCGLGIPVFIINLEGMSTKVKGIDPVPLGAFMNYTCAEYVWLDA 540 +KRK MYADLQ ++HEK G+GIPVFI NLEG+S++VKGID +PLGAFMNYTCAEYVW+DA Sbjct: 485 SKRKQMYADLQMLVHEKGGIGIPVFITNLEGISSRVKGIDAIPLGAFMNYTCAEYVWMDA 544 >ref|YP_004685541.1| glutathione ABC transporter substrate binding protein GsiB [Cupriavidus necator N-1] gb|AEI77060.1| glutathione ABC transport system substrate binding protein GsiB [Cupriavidus necator N-1] Length = 539 Score = 665 bits (1715), Expect = 0.0, Method: Composition-based stats. Identities = 321/514 (62%), Positives = 395/514 (76%), Gaps = 1/514 (0%) Query: 27 GFTRRDMMRTLLAGSLMTVGGTGLLTASGSVMAQTGKRGGKMRIATQTSSTADTLDPAKT 86 G TRRD++ LLAG + L + A+T KRGG++R+A T++ +DTLDPAK Sbjct: 27 GATRRDVLAMLLAGGMQATLAGSLAGVAVKAHAETPKRGGRIRVAVATAAASDTLDPAKQ 86 Query: 87 AHSTDYTRVHMFYNGLTKLDGKLAPQMVLAEEMLTTDAITWTVKLRKGVVFHDGKPFTPA 146 ++ DY R +M Y+GLT LD L P+ LAE TTDA TW LRKGV FHDGK +PA Sbjct: 87 SNQNDYVRCNMVYSGLTSLDRSLTPRAALAESFNTTDAKTWVFTLRKGVTFHDGKALSPA 146 Query: 147 DVVYSIMRHKDPATASKVKVVADQFESVKATGPNEVQIKLTSANADLPVILATAQFLIIR 206 DVVYSIMRHKDPATASK KV+A+Q ESVKATGPNEV + LTS NADLPVIL T FLI++ Sbjct: 147 DVVYSIMRHKDPATASKAKVLAEQIESVKATGPNEVTVVLTSPNADLPVILGTFHFLIVK 206 Query: 207 DGTTNFSTPNGTGAFKLKEFTPGVRTIGVRNENYWKTGLPYLDEVELFGIPDEAARVNAL 266 DGTT+FS GTG +K+KEF PGVRT+ VRN YWK G PYLDE+E GI D++ARVNAL Sbjct: 207 DGTTDFSAGIGTGPYKIKEFRPGVRTLVVRNGAYWKPGKPYLDEIEFVGIADDSARVNAL 266 Query: 267 LSGDVHWINDVNARSTGRVKGTPGYTVMETKSGQYTDLVIRQDQAPGNSMDFTLGMKYLL 326 LSG + + VN RS RVKGTPGY ++ T+SGQY+DL++R+D PG S DF +GMKYL Sbjct: 267 LSGGMDLVASVNPRSVARVKGTPGYGILVTQSGQYSDLIMRKDVGPGVSPDFLMGMKYLQ 326 Query: 327 DREQIKMAAFRGYAVTANDQPIDPTNRFYFAGLPQRPFDPEKAKFHLEKAGVLGSTIPIV 386 DREQ+K A GYAV NDQPIDPTNRF+F LPQRPFDPEKAKFH KAGV G +P+V Sbjct: 327 DREQMKKAIALGYAVVGNDQPIDPTNRFFFKELPQRPFDPEKAKFHFRKAGVTGK-VPVV 385 Query: 387 ASVAATGSVDMAVLMQQSAAKIGLKLDVKRVPADGYWSNQWMKVPVGFGNINPRPSADIL 446 S AA SV++A++MQQ+A ++GL+LD+KR+PADGYWSN W+ PVGFGN+NPRPSAD + Sbjct: 386 TSPAAMYSVEIAMVMQQTAQRVGLELDIKRMPADGYWSNHWLNSPVGFGNVNPRPSADTI 445 Query: 447 LTQFFKSDAQWNESGWKNPQFDQLVVAARGETDFTKRKAMYADLQTMIHEKCGLGIPVFI 506 LTQFFKSDA WNES WKNP+FDQL++AAR ETD KR+ +YAD+Q+MIHE G+GIP+F+ Sbjct: 446 LTQFFKSDAPWNESRWKNPKFDQLLLAARAETDTGKRRQVYADMQSMIHEDAGIGIPLFL 505 Query: 507 INLEGMSTKVKGIDPVPLGAFMNYTCAEYVWLDA 540 +++G S+K+KG+ P+PLG M Y+ AE VWLDA Sbjct: 506 ASIDGHSSKLKGLSPIPLGGLMGYSFAENVWLDA 539 >ref|YP_546923.1| extracellular solute-binding protein [Polaromonas sp. JS666] gb|ABE42025.1| extracellular solute-binding protein, family 5 [Polaromonas sp. JS666] Length = 539 Score = 664 bits (1714), Expect = 0.0, Method: Composition-based stats. Identities = 318/520 (61%), Positives = 398/520 (76%) Query: 21 LDQAPGGFTRRDMMRTLLAGSLMTVGGTGLLTASGSVMAQTGKRGGKMRIATQTSSTADT 80 ++ G RRD++ L+AG + L +G+ AQT +RGG++R+A T++ DT Sbjct: 20 MNAMQAGAKRRDVLAMLMAGGMQATLAGSLAGIAGAAHAQTPRRGGRIRVAGATAAINDT 79 Query: 81 LDPAKTAHSTDYTRVHMFYNGLTKLDGKLAPQMVLAEEMLTTDAITWTVKLRKGVVFHDG 140 LDPAK ++ +DY R MFYNGLT LDG L P+ LAEE T DA TW KLRKGVVFHDG Sbjct: 80 LDPAKQSNQSDYIRGSMFYNGLTVLDGSLTPRPALAEEFTTRDATTWVFKLRKGVVFHDG 139 Query: 141 KPFTPADVVYSIMRHKDPATASKVKVVADQFESVKATGPNEVQIKLTSANADLPVILATA 200 KP PADVV+S+MRHKDPATASK K +ADQ + VKA+GPNEV IKL + NADLPVIL T Sbjct: 140 KPLVPADVVFSLMRHKDPATASKAKALADQIDDVKASGPNEVTIKLKAPNADLPVILGTF 199 Query: 201 QFLIIRDGTTNFSTPNGTGAFKLKEFTPGVRTIGVRNENYWKTGLPYLDEVELFGIPDEA 260 F I++DGTT+F+ GTG +K+KEF PGVR+I VRNE YWK G PYLDE+E GI DE Sbjct: 200 HFHIVKDGTTDFNAGIGTGPYKVKEFKPGVRSIAVRNEAYWKPGRPYLDEIEYVGIGDEG 259 Query: 261 ARVNALLSGDVHWINDVNARSTGRVKGTPGYTVMETKSGQYTDLVIRQDQAPGNSMDFTL 320 ARVNALLSGD+ + VN RS RV+ + G+ + ET+SG YTDLV+R+D PG++ DF + Sbjct: 260 ARVNALLSGDLDLVGSVNPRSVQRVRDSAGHAIFETQSGGYTDLVMRRDGGPGSNPDFVM 319 Query: 321 GMKYLLDREQIKMAAFRGYAVTANDQPIDPTNRFYFAGLPQRPFDPEKAKFHLEKAGVLG 380 MKY+ DREQ+K + G+AV ANDQPIDPTNRFYFAGLPQR FD +KAKFHL+KA + Sbjct: 320 AMKYMFDREQMKRSIALGHAVVANDQPIDPTNRFYFAGLPQRAFDLDKAKFHLQKANLGS 379 Query: 381 STIPIVASVAATGSVDMAVLMQQSAAKIGLKLDVKRVPADGYWSNQWMKVPVGFGNINPR 440 + IP+VAS AA SV+MA++MQQ+A K+GL LDVKR+PADGYWSN WMK PVGFGN+NPR Sbjct: 380 APIPVVASPAALYSVEMALVMQQTAQKLGLNLDVKRMPADGYWSNHWMKSPVGFGNVNPR 439 Query: 441 PSADILLTQFFKSDAQWNESGWKNPQFDQLVVAARGETDFTKRKAMYADLQTMIHEKCGL 500 PSAD L TQFFKSDA WNESGWK+ +FDQL+VAAR ETD TKR+ MYAD+Q ++HE+ G+ Sbjct: 440 PSADTLFTQFFKSDAAWNESGWKSEKFDQLLVAARAETDDTKRRKMYADMQVLVHEQGGI 499 Query: 501 GIPVFIINLEGMSTKVKGIDPVPLGAFMNYTCAEYVWLDA 540 GIP+F+ +++G S K+KG+ P+P+G M Y AE+VWL+A Sbjct: 500 GIPLFLASIDGHSKKLKGLSPIPVGGLMGYAFAEHVWLEA 539 >ref|YP_004685559.1| ABC transporter substrate-binding protein [Cupriavidus necator N-1] gb|AEI77078.1| ABC transport system substrate binding protein [Cupriavidus necator N-1] Length = 539 Score = 658 bits (1697), Expect = 0.0, Method: Composition-based stats. Identities = 318/514 (61%), Positives = 390/514 (75%), Gaps = 1/514 (0%) Query: 27 GFTRRDMMRTLLAGSLMTVGGTGLLTASGSVMAQTGKRGGKMRIATQTSSTADTLDPAKT 86 G TRRD++ LLAG + L + AQT KRGG +R+A T++ +DTLDP+K Sbjct: 27 GATRRDVLAMLLAGGMQATLAGSLAGVAVKAHAQTPKRGGHIRVAAITAAASDTLDPSKQ 86 Query: 87 AHSTDYTRVHMFYNGLTKLDGKLAPQMVLAEEMLTTDAITWTVKLRKGVVFHDGKPFTPA 146 ++ DY R M YNGLT LDG L P+ LAE TTDA TW LRKGV FHDGK +PA Sbjct: 87 SNQNDYVRCSMVYNGLTSLDGSLTPRPALAESFNTTDAKTWVFTLRKGVTFHDGKALSPA 146 Query: 147 DVVYSIMRHKDPATASKVKVVADQFESVKATGPNEVQIKLTSANADLPVILATAQFLIIR 206 DVVYSIMRHKDPATASK KV+A+Q ESVKATGPNEV + LTS NADLPVIL T FLI++ Sbjct: 147 DVVYSIMRHKDPATASKAKVLAEQIESVKATGPNEVTVVLTSPNADLPVILGTFHFLIVK 206 Query: 207 DGTTNFSTPNGTGAFKLKEFTPGVRTIGVRNENYWKTGLPYLDEVELFGIPDEAARVNAL 266 DGTT+F+ GTG +K+KEF PGVRT+ VRN+ YW+ G PYLDE+E GI DE ARVNAL Sbjct: 207 DGTTDFNAGIGTGPYKIKEFRPGVRTVVVRNDAYWRQGRPYLDEIEFVGIGDEGARVNAL 266 Query: 267 LSGDVHWINDVNARSTGRVKGTPGYTVMETKSGQYTDLVIRQDQAPGNSMDFTLGMKYLL 326 LSG + + VN RS R+KGTPG+ ++ T+SGQYTDLV+R+D PG + DF +GMKYL Sbjct: 267 LSGGMDLVASVNPRSVARIKGTPGFGILVTQSGQYTDLVMRKDAGPGMNPDFVMGMKYLQ 326 Query: 327 DREQIKMAAFRGYAVTANDQPIDPTNRFYFAGLPQRPFDPEKAKFHLEKAGVLGSTIPIV 386 DR Q+K A YAV NDQPIDPTNRF+F GLPQR FD +KAK+HL K+GV G +P+V Sbjct: 327 DRAQMKKAIALDYAVLGNDQPIDPTNRFFFKGLPQRAFDLDKAKYHLRKSGVTGK-VPVV 385 Query: 387 ASVAATGSVDMAVLMQQSAAKIGLKLDVKRVPADGYWSNQWMKVPVGFGNINPRPSADIL 446 S AA SV+MA +MQQ+A ++GL+LD+KR+PADGYWSN W+ PVGFGN+NPRPSAD + Sbjct: 386 TSPAALYSVEMATVMQQTAQRVGLELDIKRMPADGYWSNHWLNSPVGFGNVNPRPSADTI 445 Query: 447 LTQFFKSDAQWNESGWKNPQFDQLVVAARGETDFTKRKAMYADLQTMIHEKCGLGIPVFI 506 LTQFFKSDA WNES WKNP+FDQL++AAR ETD KR MYAD+Q+MIH G+GIP+F+ Sbjct: 446 LTQFFKSDAPWNESRWKNPKFDQLLLAARAETDTAKRAQMYADMQSMIHADAGIGIPLFL 505 Query: 507 INLEGMSTKVKGIDPVPLGAFMNYTCAEYVWLDA 540 +L+G S+K+KG+ P+PLG M Y+ AE+VWLDA Sbjct: 506 ASLDGHSSKLKGLSPIPLGGLMGYSFAEHVWLDA 539