BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3040.p (318 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774556.1| dipeptide/oligopeptide/nickel ABC transporte... 498 e-139 ref|YP_004750981.1| binding-protein-dependent transport systems ... 446 e-123 ref|YP_004313529.1| ABC-type transporter integral membrane subun... 390 e-106 ref|YP_001341918.1| binding-protein-dependent transporter inner ... 372 e-101 ref|YP_002153778.1| putative binding-protein-dependent transport... 363 3e-98 >ref|YP_003774556.1| dipeptide/oligopeptide/nickel ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ62648.1| ABC-type dipeptide/oligopeptide/nickel transport systems,permease components [Herbaspirillum seropedicae SmR1] Length = 318 Score = 498 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 313/318 (98%), Positives = 315/318 (99%) Query: 1 MNGMILRLIVRRLLQAVLTLLLVSAGVFFITNLLPGDAAQTALGQAATPETVAALRLQYG 60 MNGM+LRLI RRLLQAVLTLLLVSAGVFFITNLLPGDAAQTALGQAATPETVAALRLQYG Sbjct: 1 MNGMVLRLIARRLLQAVLTLLLVSAGVFFITNLLPGDAAQTALGQAATPETVAALRLQYG 60 Query: 61 LDLPAPLRYAHWLGNLLSGNPGMSLVNNVPVAQMIGGRLPASLMLAAVTALVSVPLALFL 120 LDLPAPLRYAHWLGNLLSGNPGMSLVNNVPVAQMIGGRLPASLMLAAVTALVSVPLALFL Sbjct: 61 LDLPAPLRYAHWLGNLLSGNPGMSLVNNVPVAQMIGGRLPASLMLAAVTALVSVPLALFL 120 Query: 121 GIFSAMYRGSFFDRAVNVSAVSMVSVPEFLVATVAVMIFAVKLRWLSALSHASDAATLGA 180 GIFSAMYRGSFFDRAVNVSAVSMVSVPEFLVATVAVMIFAVKLRWLSALSHA DAATLGA Sbjct: 121 GIFSAMYRGSFFDRAVNVSAVSMVSVPEFLVATVAVMIFAVKLRWLSALSHAGDAATLGA 180 Query: 181 FIKAYAMPVLTLCCVIVAQMTRMTRAAVIDQLRSSYAEMALLKGVKRTRIVLRHALPNAI 240 FIKAYAMPVLTLCCVIVAQMTRMTRAAVIDQLRSSYAEMALLKGVKRTRIVLRHALPNAI Sbjct: 181 FIKAYAMPVLTLCCVIVAQMTRMTRAAVIDQLRSSYAEMALLKGVKRTRIVLRHALPNAI 240 Query: 241 GPIANAVALSLSYLLGGVLIVESIFNYPGIATLMIDAVTTRDMPLVQACSMIFCTGYLLL 300 GPIANAVALSLSYLLGGV+IVESIFNYPGIATLMIDAVTTRDMPLVQACSMIFC GYLLL Sbjct: 241 GPIANAVALSLSYLLGGVIIVESIFNYPGIATLMIDAVTTRDMPLVQACSMIFCAGYLLL 300 Query: 301 VLTADVLAIVSNPRLKTR 318 VLTADVLAIVSNPRLKTR Sbjct: 301 VLTADVLAIVSNPRLKTR 318 >ref|YP_004750981.1| binding-protein-dependent transport systems inner membrane component [Collimonas fungivorans Ter331] gb|AEK60158.1| binding-protein-dependent transport systems inner membrane component [Collimonas fungivorans Ter331] Length = 326 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 293/318 (92%), Positives = 307/318 (96%) Query: 1 MNGMILRLIVRRLLQAVLTLLLVSAGVFFITNLLPGDAAQTALGQAATPETVAALRLQYG 60 MNGM+LRLI+RRL A LTLLLVSAGVFFITNLLPGDAAQ ALGQAATPETVAALRLQYG Sbjct: 9 MNGMVLRLILRRLALAALTLLLVSAGVFFITNLLPGDAAQAALGQAATPETVAALRLQYG 68 Query: 61 LDLPAPLRYAHWLGNLLSGNPGMSLVNNVPVAQMIGGRLPASLMLAAVTALVSVPLALFL 120 LDLPAPLRYA WLG+LLSGNPG+SLVNNVPVAQMIGGRLPASLMLAAVTA VSVPLAL L Sbjct: 69 LDLPAPLRYARWLGDLLSGNPGLSLVNNVPVAQMIGGRLPASLMLAAVTAAVSVPLALLL 128 Query: 121 GIFSAMYRGSFFDRAVNVSAVSMVSVPEFLVATVAVMIFAVKLRWLSALSHASDAATLGA 180 GI SAMYRGS FDR VNVSAVS+VSVPEFL+AT+AVMIFAVKLRWLSALSH++DAAT+GA Sbjct: 129 GIASAMYRGSTFDRVVNVSAVSLVSVPEFLIATIAVMIFAVKLRWLSALSHSADAATVGA 188 Query: 181 FIKAYAMPVLTLCCVIVAQMTRMTRAAVIDQLRSSYAEMALLKGVKRTRIVLRHALPNAI 240 FIK+YAMPV+TLCCVIVAQMTRMTRAAVIDQLRSSYAEMALLKGV+RTRIVLRHALPNAI Sbjct: 189 FIKSYAMPVMTLCCVIVAQMTRMTRAAVIDQLRSSYAEMALLKGVRRTRIVLRHALPNAI 248 Query: 241 GPIANAVALSLSYLLGGVLIVESIFNYPGIATLMIDAVTTRDMPLVQACSMIFCTGYLLL 300 GPIANAVALSLSYLLGGV+IVESIFNYPGIATLMIDAVTTRDMPLVQACSMIFC GYLLL Sbjct: 249 GPIANAVALSLSYLLGGVIIVESIFNYPGIATLMIDAVTTRDMPLVQACSMIFCAGYLLL 308 Query: 301 VLTADVLAIVSNPRLKTR 318 VLTADVLAIVSNPRLKTR Sbjct: 309 VLTADVLAIVSNPRLKTR 326 >ref|YP_004313529.1| ABC-type transporter integral membrane subunit [Marinomonas mediterranea MMB-1] gb|ADZ91693.1| ABC-type transporter, integral membrane subunit [Marinomonas mediterranea MMB-1] Length = 317 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 229/316 (72%), Positives = 262/316 (82%) Query: 1 MNGMILRLIVRRLLQAVLTLLLVSAGVFFITNLLPGDAAQTALGQAATPETVAALRLQYG 60 MN I RLIV RL VLTL +VS VF IT+LLPGDAAQ LGQ+ATPET+AALR ++G Sbjct: 1 MNSTIARLIVNRLGIGVLTLFIVSIVVFTITSLLPGDAAQEMLGQSATPETLAALRAEFG 60 Query: 61 LDLPAPLRYAHWLGNLLSGNPGMSLVNNVPVAQMIGGRLPASLMLAAVTALVSVPLALFL 120 LD P +RY WLG LL G+PG SLVN +P+ ++IGGRLPASL LAA LVSVP+ALF+ Sbjct: 61 LDQPVYIRYIDWLGGLLVGDPGTSLVNGMPITELIGGRLPASLKLAAAATLVSVPVALFI 120 Query: 121 GIFSAMYRGSFFDRAVNVSAVSMVSVPEFLVATVAVMIFAVKLRWLSALSHASDAATLGA 180 GIFSAMYRGS FDR N+ AV VSVPEFL+AT+AV+IFAVKL WLSALSH SD A+ Sbjct: 121 GIFSAMYRGSAFDRYSNMFAVFSVSVPEFLIATIAVLIFAVKLGWLSALSHISDDASFSE 180 Query: 181 FIKAYAMPVLTLCCVIVAQMTRMTRAAVIDQLRSSYAEMALLKGVKRTRIVLRHALPNAI 240 ++AYAMPVLTLCCV+VAQM RMTRAAVIDQL S Y EMA+LKG RIVL HALPNAI Sbjct: 181 MVRAYAMPVLTLCCVLVAQMARMTRAAVIDQLSSPYVEMAMLKGASSIRIVLLHALPNAI 240 Query: 241 GPIANAVALSLSYLLGGVLIVESIFNYPGIATLMIDAVTTRDMPLVQACSMIFCTGYLLL 300 GPIANA+ALSLSYLLGGV+IVESIFNYPGIATLM+++VTTRDMPLVQAC+M+FC GYL+L Sbjct: 241 GPIANAIALSLSYLLGGVIIVESIFNYPGIATLMLNSVTTRDMPLVQACAMLFCFGYLIL 300 Query: 301 VLTADVLAIVSNPRLK 316 VL AD+ IVSNPRL+ Sbjct: 301 VLIADICEIVSNPRLR 316 >ref|YP_001341918.1| binding-protein-dependent transporter inner membrane component [Marinomonas sp. MWYL1] gb|ABR71983.1| binding-protein-dependent transport systems inner membrane component [Marinomonas sp. MWYL1] Length = 317 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 221/316 (69%), Positives = 254/316 (80%) Query: 1 MNGMILRLIVRRLLQAVLTLLLVSAGVFFITNLLPGDAAQTALGQAATPETVAALRLQYG 60 MN I RLI+ R+ VLTL +VS +F ITNLLPGDAAQ LGQ+ATPET+AALR Q G Sbjct: 1 MNQTISRLIMNRIGLGVLTLWIVSLVIFIITNLLPGDAAQELLGQSATPETLAALRTQLG 60 Query: 61 LDLPAPLRYAHWLGNLLSGNPGMSLVNNVPVAQMIGGRLPASLMLAAVTALVSVPLALFL 120 LDLP RY WLG LL G+ G S+VN + + ++I RLP +L+LAA A VSVP+AL + Sbjct: 61 LDLPIYTRYIQWLGGLLVGDAGYSMVNGMSIMELIWSRLPNTLVLAAFAASVSVPIALSI 120 Query: 121 GIFSAMYRGSFFDRAVNVSAVSMVSVPEFLVATVAVMIFAVKLRWLSALSHASDAATLGA 180 GIFSAMYRGS+FDR +N+ AV VSVPEFL+AT+AV+IFAVKL WLSALSH A T G Sbjct: 121 GIFSAMYRGSWFDRYINMMAVFAVSVPEFLIATIAVLIFAVKLGWLSALSHVESAHTFGE 180 Query: 181 FIKAYAMPVLTLCCVIVAQMTRMTRAAVIDQLRSSYAEMALLKGVKRTRIVLRHALPNAI 240 IK YAMPVLTLC V+VAQM RMTRAAVIDQL S Y EMALLKG RIVLRH LPNA+ Sbjct: 181 MIKVYAMPVLTLCSVLVAQMARMTRAAVIDQLSSPYVEMALLKGASPMRIVLRHVLPNAL 240 Query: 241 GPIANAVALSLSYLLGGVLIVESIFNYPGIATLMIDAVTTRDMPLVQACSMIFCTGYLLL 300 GPIANAVALSLSYLLGGV+IVESIFNYPGIATLM++AV+TRDMPLVQ C+M+FC GYL+L Sbjct: 241 GPIANAVALSLSYLLGGVIIVESIFNYPGIATLMLNAVSTRDMPLVQGCAMLFCFGYLIL 300 Query: 301 VLTADVLAIVSNPRLK 316 VL AD+ IVSNPRL+ Sbjct: 301 VLIADICEIVSNPRLR 316 >ref|YP_002153778.1| putative binding-protein-dependent transport system protein [Burkholderia cenocepacia J2315] emb|CAR57320.1| putative binding-protein-dependent transport system component [Burkholderia cenocepacia J2315] Length = 317 Score = 363 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 211/317 (66%), Positives = 263/317 (82%) Query: 1 MNGMILRLIVRRLLQAVLTLLLVSAGVFFITNLLPGDAAQTALGQAATPETVAALRLQYG 60 MN ++L LI RR+ LTLL+VSA +F ITNLLPGDAAQ ALGQ+ATPETVAALR Q+G Sbjct: 1 MNRILLGLIGRRIAVTALTLLIVSAIIFTITNLLPGDAAQAALGQSATPETVAALRQQFG 60 Query: 61 LDLPAPLRYAHWLGNLLSGNPGMSLVNNVPVAQMIGGRLPASLMLAAVTALVSVPLALFL 120 LD+PA +RY HWLG LL G+ G SL ++PV+++IGGRLP SL LAA+T VSVP+AL L Sbjct: 61 LDMPAHVRYVHWLGGLLHGDFGRSLSGDMPVSELIGGRLPKSLALAAITTAVSVPIALLL 120 Query: 121 GIFSAMYRGSFFDRAVNVSAVSMVSVPEFLVATVAVMIFAVKLRWLSALSHASDAATLGA 180 GI +A+ R S DR +++ +S+V+ PEFL+ATVAV++FAVKLRWLSALS++ +L Sbjct: 121 GILAAVKRESVVDRVISLGTLSLVATPEFLIATVAVLVFAVKLRWLSALSYSGPIDSLHD 180 Query: 181 FIKAYAMPVLTLCCVIVAQMTRMTRAAVIDQLRSSYAEMALLKGVKRTRIVLRHALPNAI 240 F++AYAMPVLTLC V++AQM RMTRAAVI+QL +SY EMA+LKG R+VLRHALPNAI Sbjct: 181 FLRAYAMPVLTLCAVVIAQMARMTRAAVIEQLSASYVEMAMLKGASPARVVLRHALPNAI 240 Query: 241 GPIANAVALSLSYLLGGVLIVESIFNYPGIATLMIDAVTTRDMPLVQACSMIFCTGYLLL 300 GPIANA+ALSLSYLLGGV++VE+IFNYPG+A+LM+DAV RD PLVQAC++IFC YL+L Sbjct: 241 GPIANAIALSLSYLLGGVIVVETIFNYPGLASLMVDAVGNRDFPLVQACTLIFCVAYLML 300 Query: 301 VLTADVLAIVSNPRLKT 317 VL AD+ +IVSNPRL+T Sbjct: 301 VLFADLCSIVSNPRLRT 317